genome.fa.s2.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  27  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978894--6978998	46	2.5	44	82	13	114	37	25	5	31	1.80
6978905--6978998	44	2.1	44	86	7	127	37	26	5	30	1.79
6978980--6979051	16	4.5	16	89	0	117	26	29	5	38	1.79
6982013--6982071	24	2.5	24	81	10	59	37	5	0	57	1.21
6982039--6982199	58	2.8	58	80	9	168	44	1	1	51	1.23
6982039--6982199	57	2.8	59	82	9	197	44	1	1	51	1.23
6982283--6982376	44	2.1	46	86	7	131	37	25	4	32	1.76
6982358--6982411	16	3.4	16	78	0	63	29	20	3	46	1.68
6992961--6992994	17	2.1	16	89	10	52	64	0	0	35	0.94
6994786--6994830	22	2.1	21	88	8	65	57	4	0	37	1.19
7002241--7002281	6	6.8	6	94	0	73	14	31	0	53	1.41
7010724--7010757	2	17.0	2	100	0	68	50	0	0	50	1.00
7010881--7010908	4	7.0	4	100	0	56	50	0	25	25	1.50
7019917--7020126	93	2.2	93	99	0	411	50	10	7	31	1.64
7020961--7021018	6	10.3	6	73	14	52	39	1	3	55	1.27
7020961--7021023	17	3.8	17	78	4	74	38	1	4	55	1.31
7020977--7021026	11	4.6	11	73	11	50	42	2	6	50	1.38
7022990--7023180	29	6.5	30	72	9	137	37	23	3	36	1.72
7023011--7023182	59	2.9	58	86	5	195	36	22	4	36	1.75
7023041--7023140	30	3.4	29	76	12	114	37	22	5	36	1.76
7023019--7023182	58	2.8	58	88	3	231	35	22	4	37	1.74
7023197--7023257	28	2.1	29	84	3	79	29	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7023196--7023258	29	2.2	30	80	8	76	31	26	14	26	1.95
7025403--7025643	120	2.0	120	95	0	437	48	4	26	20	1.68
7030753--7030807	11	5.3	10	78	12	58	80	0	18	1	0.81
7030763--7030806	7	6.1	7	85	15	63	81	0	18	0	0.68
7030752--7030807	21	2.7	20	84	13	69	78	0	19	1	0.84
7030763--7030803	15	2.7	15	92	7	66	80	0	19	0	0.71
7030753--7030807	26	2.1	26	83	12	69	80	0	18	1	0.81
7030765--7030811	21	2.1	23	88	7	71	76	0	23	0	0.78
7031959--7032220	51	5.3	51	79	4	243	41	24	22	11	1.86
7032225--7032283	28	2.1	28	96	0	109	35	30	22	11	1.90
7032261--7032394	48	2.8	48	79	4	126	41	20	23	14	1.89
7032311--7032450	48	2.9	47	81	3	145	37	20	26	15	1.92
7033081--7033525	206	2.2	206	93	0	746	35	20	21	22	1.96
7033425--7033605	85	2.1	85	87	0	263	33	17	24	24	1.96
7034020--7034062	11	3.9	11	87	9	52	39	0	6	53	1.28
7034042--7034136	6	16.3	6	68	18	58	38	4	3	53	1.36
7034042--7034141	17	5.8	17	77	9	103	38	4	4	54	1.38
7034052--7034122	37	1.9	37	86	11	101	36	5	4	53	1.44
7034095--7034144	11	4.6	11	73	11	50	42	2	6	50	1.38
7036025--7036187	29	5.5	29	77	10	152	38	22	4	34	1.74
7036032--7036319	59	4.9	59	78	9	252	32	23	6	37	1.81
7038444--7038583	22	5.8	25	81	11	143	11	27	21	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7038444--7038559	48	2.4	47	88	4	162	12	26	22	38	1.89
7038531--7038583	24	2.2	24	93	0	88	9	30	16	43	1.80
7038454--7038583	48	2.7	48	82	9	140	10	27	21	40	1.85
7041206--7041256	20	2.4	21	80	9	59	33	1	5	58	1.33
7046271--7046351	41	2.0	41	85	4	110	35	17	2	44	1.62
7046471--7046674	20	10.2	20	68	11	98	40	13	5	40	1.68
7046472--7046622	40	3.8	40	76	3	160	42	12	5	39	1.65
7046471--7046637	80	2.1	80	86	0	226	40	13	5	40	1.67
7046498--7046668	80	2.2	79	83	2	216	39	12	5	42	1.66
7046815--7046961	40	3.7	39	76	10	127	40	13	4	41	1.66
7046815--7046944	20	6.5	19	70	10	73	40	12	4	43	1.63
7046853--7046966	60	1.9	60	85	0	156	39	13	5	42	1.66
7046834--7046961	20	6.4	20	75	0	94	40	13	4	41	1.65
7046834--7046966	40	3.3	40	82	2	151	39	12	4	42	1.63
7046853--7046983	40	3.3	40	81	4	113	41	13	5	38	1.67
7047081--7047251	20	8.6	20	71	3	76	39	14	7	39	1.73
7047146--7047250	40	2.6	40	79	8	115	42	13	4	39	1.65
7047220--7047259	20	2.0	20	90	0	62	45	15	0	40	1.46
7047326--7047373	21	2.3	21	85	3	62	41	14	2	41	1.57
7047388--7047615	106	2.2	106	100	0	456	41	12	3	42	1.59
7047388--7047659	106	2.6	106	93	2	413	40	12	4	43	1.63
7049431--7049564	67	2.0	67	95	0	241	41	20	16	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7053165--7053196	10	3.1	11	86	13	50	68	0	0	31	0.90
7056669--7056703	16	2.2	16	89	0	52	2	0	20	77	0.90
7064126--7064234	57	1.9	58	88	1	166	28	12	11	47	1.76
7064126--7064287	61	2.7	57	83	7	166	29	11	12	46	1.77
7064204--7064320	61	1.9	60	82	3	144	26	9	11	52	1.68
7064782--7064816	17	1.9	18	88	11	54	60	2	0	37	1.12
7064796--7064821	12	2.2	12	100	0	52	61	0	0	38	0.96
7067414--7067474	26	2.4	25	88	5	86	60	0	8	31	1.26
7067535--7067593	30	1.9	32	89	6	95	47	6	16	28	1.72
7093417--7093494	31	2.5	31	89	0	120	39	15	2	42	1.61
7101522--7101555	3	11.3	3	100	0	68	32	32	0	35	1.58
7107842--7107875	3	11.3	3	100	0	68	32	32	0	35	1.58
7122671--7122697	14	1.9	14	100	0	54	40	0	59	0	0.98
7122739--7122808	28	2.5	26	78	17	68	44	0	0	55	0.99
7122739--7122808	30	2.5	27	79	9	77	44	0	0	55	0.99
7134647--7134701	23	2.5	22	84	3	74	9	25	20	45	1.80
7145989--7146117	31	4.2	30	75	7	109	37	9	10	42	1.72
7146253--7146319	31	2.2	30	84	5	82	44	13	8	32	1.75
7157180--7157215	18	1.9	19	88	5	56	52	5	8	33	1.55
7157249--7157302	26	2.0	27	82	3	65	62	9	5	22	1.45
7158607--7158688	17	4.8	17	79	8	87	39	2	4	53	1.35
7158618--7158688	34	2.1	34	86	0	97	40	1	5	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7159098--7159170	26	2.7	28	71	25	75	50	13	5	30	1.64
7160763--7161031	29	9.3	28	70	14	172	33	24	3	38	1.72
7160814--7161064	29	8.7	28	71	17	149	33	25	3	38	1.73
7160814--7161064	57	4.4	57	86	6	287	33	25	3	38	1.73
7160764--7160973	86	2.4	88	79	13	238	33	25	3	36	1.74
7161205--7161236	16	2.0	16	93	0	55	9	12	12	65	1.47
7181683--7181713	8	3.9	8	95	0	53	67	0	0	32	0.91
7186722--7186751	12	2.4	13	88	11	53	63	30	0	6	1.20
7192989--7193046	27	2.1	28	93	3	100	58	0	0	41	0.98
7193000--7193060	27	2.2	28	88	2	88	60	1	0	37	1.07
7193759--7193783	13	1.9	13	100	0	50	44	0	0	56	0.99
7193968--7194005	16	2.4	16	83	12	51	55	21	0	23	1.44
7209484--7209518	17	2.0	17	88	5	52	40	0	2	57	1.14
7219052--7219126	32	2.3	33	79	6	82	53	16	1	29	1.51
7220045--7220089	20	2.2	21	84	4	56	37	2	2	57	1.23
7222520--7222580	32	1.9	32	90	3	97	62	0	0	37	0.96
7222621--7222673	20	2.6	21	82	8	56	66	1	7	24	1.28
7224570--7224642	22	3.3	22	76	5	76	46	4	0	49	1.21
7227721--7227747	14	1.9	14	100	0	54	44	29	0	25	1.54
7228986--7229046	32	1.9	32	90	3	97	62	0	0	37	0.96
7229032--7229087	25	2.4	22	80	16	60	58	0	5	35	1.21
7229087--7229139	20	2.6	21	82	8	56	66	1	7	24	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7239666--7239786	23	5.2	23	82	11	147	10	25	22	41	1.86
7239666--7239786	48	2.6	48	83	7	158	10	25	22	41	1.86
7239751--7239825	39	1.9	39	94	0	132	12	21	21	45	1.84
7242310--7242338	12	2.4	12	100	0	58	51	0	0	48	1.00
7249703--7249749	17	2.6	18	76	10	60	48	0	23	27	1.51
7258031--7258323	146	2.0	145	87	2	419	32	15	12	39	1.84
7260587--7260648	31	2.0	30	81	9	72	22	12	3	61	1.46
7296472--7296576	23	4.5	23	75	3	95	29	11	16	42	1.83
7299477--7299501	12	2.1	12	100	0	50	36	0	16	48	1.46
7299834--7299877	18	2.5	18	92	3	72	52	0	2	45	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135