genome.fa.s2.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  46  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11922178--11922247	17	3.9	17	79	15	79	35	0	1	62	1.04
11922178--11922262	9	9.5	8	74	20	62	37	0	2	60	1.10
11922181--11922276	28	3.4	29	80	12	87	39	2	2	56	1.23
11930464--11930490	2	13.5	2	100	0	54	48	0	0	51	1.00
11931100--11931158	31	1.9	30	83	10	75	40	6	6	45	1.57
11931286--11931328	3	14.3	3	100	0	86	67	0	0	32	0.91
11941948--11941987	20	1.9	22	90	10	66	50	0	0	50	1.00
11941978--11942104	10	13.5	10	71	17	85	65	4	0	29	1.18
11941979--11942104	38	3.4	35	73	13	92	65	4	0	29	1.19
11941980--11942093	28	4.1	27	72	18	85	64	4	0	30	1.13
11942053--11942085	11	3.1	11	91	4	50	69	0	0	30	0.88
11942057--11942120	28	2.3	26	84	12	76	67	1	1	29	1.09
11942041--11942121	37	2.2	37	84	4	110	67	1	1	29	1.06
11942041--11942123	26	3.0	27	79	15	89	67	1	2	28	1.11
11942215--11942260	2	23.0	2	100	0	92	50	0	0	50	1.00
11942503--11942580	10	7.9	9	72	16	57	33	1	5	60	1.27
11942490--11942580	20	4.6	20	73	10	71	35	1	5	58	1.29
11942513--11942590	30	2.5	31	76	17	74	33	1	5	60	1.27
11944192--11944277	29	3.1	29	76	17	94	24	11	11	52	1.71
11944230--11944305	29	2.6	28	83	10	82	28	15	9	46	1.77
11944513--11944697	58	3.1	57	73	12	149	51	10	11	26	1.70
11945152--11945319	81	2.1	82	89	2	259	41	15	4	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11946080--11946119	21	1.9	21	85	10	55	50	5	7	37	1.53
11949730--11949844	54	2.1	54	83	3	142	34	15	20	28	1.94
11949743--11949852	27	4.1	27	83	0	139	30	19	20	30	1.97
11979342--11979374	12	2.8	12	95	0	57	27	36	30	6	1.81
11985199--11985223	12	2.1	12	100	0	50	48	16	8	28	1.74
11987205--11987437	41	5.5	42	76	7	150	38	12	24	24	1.90
11988032--11988084	20	2.6	21	84	6	72	32	13	24	30	1.93
11994542--11994581	21	1.9	21	89	0	62	5	2	20	72	1.15
11994507--11994580	32	2.3	33	83	6	89	6	4	21	67	1.31
11994542--11994587	21	2.2	21	84	3	58	6	4	19	69	1.28
11994578--11994692	23	5.0	23	75	5	115	11	6	17	64	1.47
11994584--11994692	46	2.3	47	92	3	193	11	6	18	64	1.46
11994613--11994706	23	4.3	21	76	12	66	11	4	18	65	1.40
12003115--12003172	29	2.0	29	86	0	80	56	20	6	15	1.62
12004773--12004815	22	2.0	22	95	0	77	34	0	25	39	1.56
12005654--12005713	22	2.7	21	82	10	66	50	0	3	46	1.18
12011347--12011381	18	1.9	18	88	0	52	65	5	0	28	1.15
12020422--12020447	10	2.6	10	100	0	52	53	0	0	46	1.00
12029206--12029242	18	2.2	18	85	9	51	5	10	2	81	0.96
12035628--12035666	12	3.2	12	81	3	51	79	2	7	10	1.02
12042289--12042523	52	4.5	52	87	2	303	28	14	23	32	1.95
12043476--12043505	14	2.1	15	93	6	53	46	6	23	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12044214--12044250	19	1.9	19	88	0	56	18	2	8	70	1.25
12044466--12044494	6	4.8	6	100	0	58	0	0	13	86	0.58
12047160--12047247	44	2.0	44	97	0	167	26	15	26	31	1.96
12050684--12050747	24	2.6	25	87	5	94	51	7	1	39	1.40
12055437--12055513	6	14.0	6	71	22	62	42	2	0	54	1.14
12055443--12055484	16	2.5	17	92	3	68	40	0	0	59	0.97
12055437--12055511	27	2.8	26	87	6	96	41	2	0	56	1.13
12055437--12055512	11	7.0	11	77	12	61	42	2	0	55	1.14
12055458--12055513	16	3.5	15	80	9	58	44	3	0	51	1.18
12056212--12056241	15	2.0	15	93	0	51	60	3	0	36	1.14
12056221--12056304	3	26.7	3	71	9	51	55	1	1	41	1.15
12056234--12056305	16	4.7	15	73	14	67	54	1	1	43	1.17
12056244--12056304	19	3.3	18	71	24	56	55	0	1	42	1.09
12056356--12056406	22	2.3	22	89	0	75	13	45	25	15	1.83
12057374--12057466	29	3.2	29	71	17	93	36	30	1	32	1.65
12057312--12057508	58	3.4	59	90	2	308	32	29	2	35	1.71
12059807--12059869	24	2.6	24	89	0	99	50	11	14	23	1.74
12061799--12061861	24	2.6	24	87	0	90	50	9	14	25	1.72
12066880--12067045	36	4.4	36	72	10	136	34	23	16	25	1.95
12066899--12066983	42	2.0	42	86	0	116	36	21	18	23	1.95
12081793--12081861	26	2.7	26	86	0	102	23	26	27	23	2.00
12083434--12083689	36	7.3	36	73	11	183	39	21	14	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12083474--12083662	65	2.8	70	82	7	212	38	21	14	25	1.91
12083430--12083620	101	1.9	101	82	2	240	40	20	14	24	1.90
12083519--12083689	71	2.4	72	85	2	220	38	22	14	23	1.92
12085056--12085097	3	14.0	3	90	9	68	33	0	0	66	0.92
12085057--12085113	27	2.1	27	83	0	69	42	0	0	57	0.98
12085091--12085124	17	2.0	16	88	11	50	61	0	0	38	0.96
12085218--12085250	12	2.8	12	95	0	57	60	3	9	27	1.42
12085304--12085368	3	22.0	3	96	3	123	66	0	0	33	0.92
12089165--12089202	16	2.5	15	87	12	51	39	18	2	39	1.65
12089495--12089549	21	2.5	22	80	8	60	29	0	1	69	0.99
12089516--12089550	16	2.1	16	89	5	52	28	0	0	71	0.86
12089501--12089551	22	2.3	22	80	12	59	29	0	1	68	1.00
12090133--12090181	26	1.9	25	83	4	62	59	2	2	36	1.21
12097839--12098142	158	1.9	158	87	1	448	23	24	22	30	1.99
12099590--12099619	16	1.9	16	93	6	53	50	0	0	50	1.00
12102219--12102269	24	2.1	24	88	0	75	21	11	9	56	1.63
12102227--12102281	24	2.3	24	80	0	65	25	14	10	49	1.76
12108405--12108455	23	2.3	23	82	3	59	25	1	7	64	1.31
12108413--12108464	23	2.3	22	90	6	86	28	1	3	65	1.21
12108424--12108475	23	2.3	23	86	3	70	28	0	1	69	0.99
12114433--12114514	28	2.9	30	77	13	95	46	0	2	51	1.14
12114532--12114556	10	2.5	10	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12115052--12115117	22	3.0	21	75	12	78	53	6	1	39	1.35
12116898--12116946	16	3.1	17	77	8	50	51	2	0	46	1.12
12118316--12118534	79	2.8	78	83	2	287	33	13	12	41	1.81
12118799--12118858	26	2.3	26	88	2	86	28	10	16	45	1.80
12118812--12118859	13	3.8	13	91	2	80	25	8	22	43	1.81
12118810--12118859	26	2.0	25	96	4	91	24	12	22	42	1.87
12120997--12121059	6	10.7	6	75	11	51	39	4	0	55	1.21
12120984--12121059	17	4.3	18	84	14	95	38	3	1	56	1.26
12120984--12121059	37	2.1	34	88	7	107	38	3	1	56	1.26
12121269--12121330	25	2.5	25	84	10	74	22	53	6	17	1.67
12121972--12122000	15	2.0	15	93	6	51	75	0	0	24	0.80
12123043--12123384	30	11.6	30	79	5	308	35	26	4	33	1.76
12123043--12123390	88	3.9	86	79	9	326	35	27	4	33	1.77
12127568--12127607	15	2.8	14	81	7	53	40	0	0	60	0.97
12127748--12127790	18	2.4	18	88	7	61	46	0	0	53	1.00
12131257--12131298	21	2.0	21	90	0	66	19	35	21	23	1.96
12131267--12131311	21	2.1	21	87	0	63	13	37	24	24	1.91
12138300--12138395	41	2.3	41	92	0	156	38	28	4	29	1.75
12144429--12144458	16	1.9	16	93	6	53	13	13	3	70	1.30
12144450--12144504	21	2.6	21	100	0	110	12	9	3	74	1.18
12145184--12145218	17	2.1	17	100	0	70	57	11	22	8	1.61
12145243--12145283	2	20.5	2	100	0	82	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12146360--12146396	18	2.0	20	89	10	60	54	8	0	37	1.30
12146411--12146449	19	2.1	19	85	9	53	46	2	0	51	1.14
12151197--12151244	23	2.1	23	96	0	87	45	4	12	37	1.61
12152533--12152617	25	3.4	25	78	0	80	37	22	16	23	1.93
12164575--12164625	24	2.1	24	92	0	84	27	19	17	35	1.94
12167898--12167936	16	2.5	16	83	4	53	30	5	2	61	1.31
12168584--12168635	26	2.0	26	88	7	79	48	0	3	48	1.20
12169701--12169764	13	4.9	13	74	0	65	40	7	15	35	1.76
12172248--12172279	16	2.0	16	100	0	64	31	31	6	31	1.82
12175681--12175745	34	1.9	34	84	6	87	18	30	3	47	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135