genome.fa.s2.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  6  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792204--1792265	16	3.9	16	76	0	61	50	4	16	29	1.65
1792194--1792255	32	1.9	32	90	6	99	50	3	16	30	1.61
1792420--1792586	58	2.9	57	77	10	178	50	1	3	44	1.27
1798024--1798119	47	2.0	47	100	0	192	28	2	12	57	1.47
1799918--1799998	29	2.8	29	71	19	69	45	2	20	30	1.64
1799916--1800347	59	7.3	58	81	8	163	40	6	22	30	1.78
1800068--1800469	30	13.6	29	64	18	89	39	5	23	30	1.79
1799952--1800467	237	2.2	233	83	5	635	40	6	23	30	1.80
1800006--1800498	59	8.4	59	83	3	521	38	6	23	30	1.80
1800404--1800509	29	3.6	29	81	7	115	31	1	29	37	1.68
1799893--1800471	117	4.9	116	81	5	565	39	6	23	30	1.79
1801347--1801371	13	1.9	13	100	0	50	16	8	4	72	1.24
1801784--1801820	19	1.9	19	88	0	56	43	0	2	54	1.14
1801776--1801809	16	2.2	16	89	5	52	44	2	0	52	1.16
1802343--1802385	19	2.3	19	91	0	68	9	16	41	32	1.80
1802582--1802621	16	2.4	17	91	4	64	57	2	0	40	1.12
1802585--1802637	27	2.0	27	85	7	72	56	7	0	35	1.28
1803088--1803192	39	2.7	39	88	2	149	25	24	27	21	2.00
1803400--1803534	69	2.0	69	96	0	252	33	14	19	33	1.91
1803336--1803626	161	1.8	161	90	1	476	32	17	16	34	1.92
1803469--1804282	92	8.8	92	93	0	1385	31	18	16	33	1.93
1803971--1804217	40	5.6	40	67	24	138	34	18	15	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1803472--1804282	277	2.9	277	95	0	1428	32	18	16	33	1.93
1804442--1804681	100	2.4	100	82	7	272	14	23	20	41	1.89
1805240--1805419	98	1.8	100	83	5	242	40	12	23	23	1.89
1805967--1806016	18	2.9	16	80	13	55	4	12	4	80	1.00
1808973--1809009	19	1.9	19	88	0	56	43	0	2	54	1.14
1808965--1808998	16	2.2	16	89	5	52	44	2	0	52	1.16
1809533--1809575	19	2.3	19	91	0	68	9	18	41	30	1.82
1809760--1809799	16	2.4	17	91	4	64	57	2	0	40	1.12
1809763--1809815	27	2.0	27	85	7	72	56	7	0	35	1.28
1814050--1814194	12	12.4	12	68	23	62	47	0	0	51	1.05
1814061--1814201	58	2.4	58	89	5	205	47	0	0	51	1.05
1814120--1814201	32	2.9	26	69	19	74	48	0	1	50	1.08
1817970--1817995	4	6.5	4	100	0	52	50	23	0	26	1.50
1818719--1818811	43	2.2	43	94	0	159	29	21	12	36	1.91
1819179--1819219	23	1.9	21	85	14	57	36	4	19	39	1.73
1819944--1819977	2	17.0	2	100	0	68	50	0	0	50	1.00
1823157--1823187	3	10.3	3	100	0	62	64	0	0	35	0.94
1826279--1826312	3	11.3	3	100	0	68	64	0	0	35	0.94
1827788--1827818	14	2.2	14	94	0	53	48	0	0	51	1.00
1832710--1832755	23	1.9	23	86	8	65	58	4	2	34	1.30
1833806--1833832	11	2.5	11	100	0	54	14	7	0	77	0.97
1834779--1834817	17	2.3	17	95	0	69	76	2	0	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834780--1834834	6	9.3	6	84	4	67	76	1	3	18	1.02
1834884--1834910	4	6.8	4	100	0	54	77	0	0	22	0.76
1837658--1837706	26	1.9	26	87	4	73	71	0	4	24	1.03
1837685--1837723	14	2.6	15	88	8	53	76	0	2	20	0.90
1837659--1837724	20	3.2	21	78	6	73	71	0	3	25	1.01
1837658--1837712	26	2.1	26	83	6	67	72	0	3	23	1.00
1838788--1838833	24	1.9	23	86	8	65	56	6	4	32	1.45
1843195--1843222	2	14.0	2	100	0	56	50	0	0	50	1.00
1843936--1844090	78	2.0	78	93	0	265	20	16	16	47	1.83
1849207--1849365	85	1.9	85	92	3	268	28	16	10	44	1.81
1855227--1855303	38	2.0	39	97	2	147	44	12	15	27	1.83
1856711--1856798	43	2.0	43	100	0	176	47	13	18	20	1.82
1859107--1859136	2	15.0	2	100	0	60	50	0	50	0	1.00
1866306--1866347	17	2.3	19	76	20	52	66	0	4	28	1.12
1866314--1866347	17	2.0	17	94	0	59	67	0	5	26	1.13
1883190--1883240	25	2.0	25	96	0	93	35	21	3	39	1.72
1883435--1883464	2	15.0	2	100	0	60	50	0	0	50	1.00
1885074--1885124	26	2.1	26	85	10	72	54	0	0	45	0.99
1888097--1888130	17	2.1	16	88	5	50	32	5	2	58	1.37
1889850--1889874	5	5.0	5	100	0	50	80	0	20	0	0.72
1893894--1893964	2	35.5	2	100	0	142	49	0	0	50	1.00
1905930--1905960	9	3.4	9	100	0	62	58	0	41	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905930--1905970	18	2.3	18	87	8	57	60	0	39	0	0.96
1912979--1913031	17	3.1	17	81	13	56	79	5	1	13	0.99
1915164--1915201	11	3.5	11	92	3	60	84	0	15	0	0.63
1915172--1915202	10	3.0	10	95	4	53	87	0	12	0	0.55
1916805--1916902	45	2.2	45	88	0	142	20	31	16	31	1.95
1917620--1917778	42	3.8	42	84	3	169	20	20	21	37	1.94
1929487--1929532	20	2.1	21	84	11	58	26	6	0	67	1.15
1930971--1930999	6	4.8	6	100	0	58	48	34	0	17	1.47
1933122--1933196	30	2.3	33	80	15	102	62	14	0	22	1.31
1938819--1938904	29	3.0	29	81	6	95	41	10	18	29	1.84
1939633--1939690	2	29.0	2	96	0	107	51	48	0	0	1.00
1939680--1939765	42	2.0	43	88	2	129	20	45	18	15	1.85
1941632--1941841	107	2.0	107	99	0	411	40	9	17	31	1.82
1944878--1944932	3	18.3	3	96	0	56	21	0	10	67	1.21
1947028--1947229	72	2.8	71	83	4	244	30	14	18	36	1.91
1949808--1949836	3	9.7	3	100	0	58	31	0	0	68	0.89
1951934--1952273	72	4.7	72	92	0	511	31	15	16	36	1.90
1958574--1958619	20	2.1	21	84	11	58	26	6	0	67	1.15
1960882--1960923	8	5.4	8	82	5	50	52	14	9	23	1.71
1962455--1962480	3	8.7	3	100	0	52	30	0	0	69	0.89
1964535--1964951	72	5.8	72	95	1	635	33	14	15	36	1.88
1968218--1968279	27	2.3	27	100	0	124	50	11	12	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1975998--1976063	33	2.0	33	85	8	91	48	22	10	18	1.78
1976947--1977304	176	2.0	178	91	1	585	48	7	6	37	1.57
1979242--1979290	22	2.3	22	79	10	57	34	10	4	51	1.55
1984456--1984501	18	2.5	18	92	3	74	32	17	17	32	1.93
1985408--1985444	17	2.2	17	86	13	51	5	8	16	70	1.30
1990146--1990203	31	1.9	31	92	3	100	60	10	5	24	1.49
1991491--1991527	19	1.9	19	89	10	58	8	48	0	43	1.32
1995818--1995912	47	2.0	47	100	0	190	28	14	29	27	1.95
1996762--1996823	3	20.7	3	100	0	124	32	33	0	33	1.58
2009809--2010265	222	2.1	222	86	2	641	27	19	18	34	1.95
2009895--2010347	222	2.0	222	78	5	470	29	18	19	33	1.95
2010487--2010663	72	2.5	72	79	5	196	32	19	14	33	1.91
2015732--2015773	21	2.0	22	86	13	61	30	7	2	59	1.37
2016613--2016678	13	5.1	13	77	3	71	39	16	4	39	1.69
2022795--2023433	222	2.9	223	86	2	890	28	16	17	37	1.92
2023582--2023781	72	2.8	70	80	7	204	32	15	18	34	1.91
2037295--2037352	29	2.0	29	93	3	98	37	3	22	36	1.71
2037270--2037478	30	7.1	29	78	11	167	35	2	22	38	1.69
2037430--2037495	30	2.2	30	83	2	80	40	3	13	42	1.60
2038358--2038869	209	2.4	208	80	6	579	23	19	16	39	1.92
2039119--2039144	3	8.7	3	100	0	52	30	0	0	69	0.89
2043294--2043345	25	2.1	25	100	0	104	32	7	25	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2050629--2050810	59	3.1	59	80	7	167	38	1	19	40	1.61
2050657--2050820	30	5.6	29	80	9	172	39	0	20	39	1.57
2050657--2050820	58	2.8	59	84	7	192	39	0	20	39	1.57
2051281--2051327	17	2.8	17	90	3	69	51	0	4	44	1.21
2051939--2051999	27	2.4	23	73	23	59	52	0	1	45	1.10
2055105--2055150	6	7.5	6	92	4	65	26	0	4	69	1.07
2055886--2055933	22	2.2	22	96	3	89	25	10	0	64	1.25
2056406--2056435	6	5.0	6	100	0	60	0	16	16	66	1.25
2073861--2073941	32	2.5	33	78	9	94	30	4	4	59	1.40
2083028--2083070	20	2.2	20	91	0	68	44	0	2	53	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135