genome.fa.s2.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  43  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11097589--11097648	9	6.6	9	74	11	50	80	0	18	1	0.80
11097576--11097622	16	3.0	15	81	9	58	87	0	8	4	0.67
11097573--11097622	10	5.0	10	76	13	50	86	0	10	4	0.71
11097592--11097653	25	2.6	25	76	16	62	75	0	22	1	0.88
11097573--11097648	37	2.0	38	82	7	93	80	0	17	2	0.83
11097582--11097648	7	9.4	7	72	18	50	80	0	17	1	0.79
11098589--11098963	50	7.6	49	79	4	371	33	17	32	16	1.92
11098589--11098963	98	3.8	96	78	7	335	33	17	32	16	1.92
11098591--11098963	148	2.5	146	82	3	435	33	17	32	16	1.92
11098987--11099014	5	5.6	5	100	0	56	82	0	0	17	0.68
11099068--11099290	98	2.3	99	79	6	256	36	14	28	20	1.92
11099491--11100245	39	19.4	39	69	14	285	24	29	18	27	1.98
11099489--11100282	78	10.2	78	80	3	794	23	29	19	27	1.98
11100362--11100770	210	1.9	210	86	1	577	37	15	23	23	1.93
11102624--11102977	58	6.1	59	75	12	261	34	25	2	37	1.70
11102653--11102855	88	2.3	88	84	3	268	34	24	0	40	1.59
11102624--11102872	29	8.4	29	84	2	237	34	24	1	39	1.64
11102853--11102920	29	2.3	29	84	0	100	32	29	4	33	1.77
11110052--11110126	30	2.5	30	82	4	80	37	5	20	37	1.75
11110069--11110126	29	2.0	30	86	3	82	37	6	20	34	1.80
11110143--11110338	57	3.4	58	84	2	261	30	3	27	38	1.74
11110143--11110348	86	2.4	85	81	6	245	30	3	26	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11110115--11110357	115	2.1	115	83	6	314	31	3	26	38	1.74
11110143--11110338	29	6.8	29	81	1	225	30	3	27	38	1.74
11110129--11110439	115	2.7	114	79	7	306	32	2	26	37	1.71
11110301--11110438	30	4.6	30	77	6	120	33	2	27	36	1.69
11111174--11111224	26	1.9	26	84	4	66	21	1	7	68	1.25
11112317--11112473	71	2.2	71	94	0	269	22	19	23	34	1.97
11114252--11114398	71	2.1	71	86	0	204	21	21	23	34	1.97
11114269--11114425	71	2.2	71	94	0	269	21	19	22	35	1.96
11114703--11114732	13	2.4	12	94	5	51	10	6	6	76	1.15
11115818--11115871	18	3.0	18	91	0	90	16	5	27	50	1.68
11118366--11118430	4	16.2	4	93	0	76	47	7	1	43	1.41
11118477--11118631	80	1.9	80	93	2	267	29	27	21	21	1.99
11135906--11135941	13	2.8	13	82	0	54	22	2	0	75	0.94
11138122--11138184	6	10.8	6	81	8	60	19	3	7	69	1.27
11138102--11138143	13	3.3	13	87	9	52	14	7	7	71	1.29
11141737--11141784	24	2.0	23	88	4	69	6	2	29	62	1.31
11144783--11144838	2	28.0	2	96	0	103	50	1	0	48	1.11
11150937--11151217	32	8.7	32	79	3	260	29	18	16	36	1.92
11152197--11152293	40	2.4	39	83	11	108	28	25	9	36	1.87
11152352--11152627	41	6.6	41	79	4	293	26	31	10	31	1.91
11152352--11152627	84	3.3	84	85	3	369	26	31	10	31	1.91
11152354--11152632	125	2.2	126	80	7	318	26	31	10	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11157753--11157786	16	2.1	17	88	5	52	67	0	0	32	0.91
11157765--11157827	26	2.5	24	78	14	63	63	0	1	34	1.04
11158754--11158805	24	2.1	25	82	10	63	19	25	5	50	1.69
11160095--11160229	59	2.3	59	90	0	207	36	10	13	40	1.79
11160825--11160850	13	2.0	13	100	0	52	53	7	15	23	1.67
11164092--11164141	22	2.3	22	89	0	73	48	36	0	16	1.46
11164908--11165033	45	2.8	45	82	8	148	45	5	28	20	1.74
11165522--11165847	154	2.1	159	90	4	511	36	10	22	31	1.87
11169839--11169898	28	2.1	28	90	0	93	40	10	13	36	1.78
11178320--11178359	21	1.9	21	89	0	62	75	10	0	15	1.05
11184405--11184439	17	2.1	17	89	10	54	48	0	11	40	1.39
11186562--11186704	45	3.3	45	84	8	156	27	20	16	35	1.94
11186584--11186877	39	7.3	39	80	7	297	26	17	22	34	1.96
11186627--11186877	79	3.2	78	83	5	308	25	16	23	33	1.95
11186942--11187038	50	1.9	50	89	0	149	18	24	20	36	1.95
11186951--11187059	50	2.2	50	81	3	130	22	23	18	35	1.95
11197010--11197060	27	2.0	26	84	7	68	45	25	0	29	1.54
11197626--11197655	12	2.6	12	94	5	53	73	0	0	26	0.84
11198093--11198186	28	3.4	28	89	0	143	34	13	26	25	1.94
11198116--11198163	15	3.3	15	72	21	57	31	14	27	27	1.95
11198152--11198227	38	2.0	38	100	0	152	34	15	23	26	1.95
11198124--11198252	66	2.0	66	85	3	179	33	14	26	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11198096--11198273	94	1.9	94	89	0	275	31	14	25	28	1.94
11198190--11198285	28	3.4	28	85	1	120	30	14	26	29	1.95
11206873--11207033	41	3.9	40	79	3	151	39	18	22	19	1.92
11208180--11208240	29	2.1	29	84	3	77	39	3	6	50	1.45
11208537--11208587	22	2.4	22	81	15	63	45	9	0	45	1.36
11208633--11208747	42	2.7	43	77	10	137	33	19	25	22	1.97
11212462--11213075	122	5.1	121	91	2	972	50	6	1	41	1.37
11212941--11212968	14	2.0	14	100	0	56	57	0	0	42	0.99
11212463--11213075	241	2.5	241	91	3	968	50	6	1	41	1.37
11219139--11219314	43	4.1	42	83	1	217	24	19	26	29	1.99
11219139--11219323	85	2.2	84	85	3	237	23	18	26	31	1.98
11223524--11223575	24	2.2	24	89	0	77	55	5	1	36	1.35
11243970--11243998	12	2.4	12	100	0	58	20	27	31	20	1.98
11245624--11245714	24	3.8	24	89	2	121	34	3	47	15	1.62
11247899--11247952	21	2.6	21	79	5	65	35	24	9	31	1.87
11248647--11248711	25	2.6	25	90	0	103	30	20	20	29	1.97
11253976--11254009	17	2.0	17	94	0	59	32	2	0	64	1.08
11255565--11255676	47	2.4	47	87	0	161	26	31	17	24	1.97
11255900--11255959	25	2.3	26	85	5	86	60	18	1	20	1.45
11256231--11256282	15	3.3	15	79	10	50	57	0	23	19	1.40
11276675--11276725	12	4.2	12	76	14	50	1	35	0	62	1.06
11276678--11276725	18	2.6	17	81	12	51	2	35	0	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11296992--11297024	15	2.2	15	100	0	66	42	30	6	21	1.77
11297342--11297492	42	3.6	41	81	6	151	23	27	9	39	1.85
11306582--11306685	43	2.4	43	90	0	154	25	30	21	22	1.98
11308070--11308209	55	2.5	56	82	10	162	21	17	28	32	1.96
11309518--11309610	35	2.7	35	91	0	159	22	30	11	35	1.90
11312427--11312472	21	2.2	21	92	0	74	34	26	23	15	1.94
11324184--11324239	27	2.1	27	96	0	103	30	32	17	19	1.95
11328720--11328752	12	2.8	12	95	0	57	57	0	42	0	0.98
11331149--11331178	11	2.6	12	89	10	53	63	6	0	30	1.20
11332897--11332947	21	2.4	21	86	0	66	31	29	13	25	1.94
11334647--11334671	3	8.3	3	100	0	50	64	0	36	0	0.94
11341124--11341279	56	2.8	56	80	8	167	39	10	16	32	1.84
11341124--11341282	55	2.8	56	83	3	187	39	11	16	32	1.85
11341117--11341308	55	3.5	54	80	7	172	36	13	14	34	1.86
11341181--11341430	137	1.8	137	84	6	346	38	14	15	32	1.88
11341313--11341442	56	2.4	55	83	7	167	40	14	14	30	1.86
11341358--11341521	54	3.0	54	78	7	136	35	15	20	28	1.93
11341423--11341532	53	2.1	54	87	1	159	31	16	23	28	1.96
11342592--11342632	4	9.8	4	84	10	55	78	0	21	0	0.76
11342592--11342649	13	4.5	13	81	14	66	72	0	27	0	0.85
11342592--11342629	9	4.4	9	90	9	62	78	0	21	0	0.74
11342672--11342696	12	2.1	12	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11345139--11345189	6	8.5	6	97	0	93	33	35	29	1	1.69
11345274--11345365	45	2.0	45	85	4	123	31	28	15	25	1.95
11345359--11345402	21	2.1	21	86	0	61	25	34	13	27	1.93
11347986--11348033	24	2.0	24	100	0	96	16	16	20	45	1.85
11348411--11348467	27	2.1	28	83	9	73	57	12	3	26	1.50
11348469--11348509	19	2.2	19	86	0	55	0	34	0	65	0.93
11352801--11352893	21	4.4	20	69	12	62	70	17	5	6	1.27
11352867--11352916	24	2.1	23	85	3	64	76	16	4	4	1.10
11359005--11359060	25	2.2	26	78	18	64	44	0	3	51	1.18
11370388--11370450	24	2.6	24	89	0	99	25	14	9	50	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135