genome.fa.s2.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  44  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11370440--11370570	67	2.0	67	92	0	217	30	10	12	46	1.75
11372531--11372588	25	2.3	25	93	0	98	29	1	31	37	1.67
11373689--11373789	36	2.8	36	85	5	125	40	15	24	18	1.90
11375528--11375576	3	15.7	3	87	8	71	2	28	0	69	1.00
11376313--11376371	18	3.3	18	64	17	50	23	15	25	35	1.94
11376313--11376403	36	2.5	36	92	0	146	23	16	25	35	1.95
11376313--11376481	36	4.7	36	83	4	137	24	15	27	32	1.95
11376393--11376548	72	2.2	72	82	4	181	27	14	27	30	1.95
11376388--11376548	36	4.5	36	82	6	164	27	14	27	30	1.95
11377606--11377658	26	2.0	26	92	0	88	64	5	5	24	1.38
11377967--11378119	50	3.1	50	91	3	245	52	7	11	28	1.63
11380726--11380766	21	2.0	21	85	0	55	21	14	2	60	1.45
11387929--11387995	25	2.9	22	70	12	62	26	14	2	55	1.54
11387972--11388016	21	2.2	21	84	4	56	26	8	6	57	1.54
11388034--11388082	25	1.9	26	88	12	75	22	10	0	67	1.20
11393800--11393888	28	3.2	28	82	1	108	28	14	22	34	1.93
11393815--11393903	28	3.2	29	79	6	76	32	14	20	32	1.93
11394683--11394717	18	2.0	18	94	5	63	17	5	17	60	1.55
11395646--11395700	27	2.0	27	96	0	101	34	20	18	27	1.95
11398558--11398599	22	2.0	20	82	13	50	40	7	0	52	1.29
11401926--11401978	26	2.0	26	88	0	79	35	9	28	26	1.87
11405425--11405465	18	2.3	18	95	4	75	51	4	24	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11410753--11410779	12	2.2	12	100	0	54	14	25	0	59	1.36
11416160--11416280	41	3.0	41	76	19	119	24	19	23	33	1.97
11416161--11416742	39	14.8	39	70	9	317	25	16	24	33	1.96
11416335--11416742	77	5.2	77	80	7	407	25	15	25	33	1.95
11425176--11425218	15	3.0	14	80	12	52	41	18	27	11	1.85
11425667--11425706	17	2.2	18	91	8	64	72	0	7	20	1.08
11426154--11426200	22	2.1	23	84	7	62	53	0	4	42	1.20
11428514--11428567	23	2.4	23	75	3	65	53	0	7	38	1.29
11439853--11439883	15	2.1	15	100	0	62	38	0	19	41	1.51
11439855--11439891	15	2.4	15	90	4	56	48	2	16	32	1.60
11450170--11450290	52	2.3	54	80	7	133	48	7	2	41	1.44
11450003--11450371	150	2.4	150	84	4	465	45	10	2	41	1.53
11450784--11450814	3	10.3	3	92	0	53	61	0	3	35	1.12
11451204--11451772	42	13.6	41	85	2	638	36	24	18	20	1.95
11451204--11451785	84	7.0	83	87	2	720	36	24	18	21	1.95
11451204--11451772	126	4.5	126	85	2	716	36	24	18	20	1.95
11453882--11453936	24	2.2	24	83	3	65	47	10	14	27	1.78
11455938--11456003	17	3.9	16	72	16	53	56	12	15	16	1.68
11457220--11457310	24	3.8	24	82	4	94	32	26	17	23	1.96
11459354--11459405	21	2.4	21	81	9	52	1	32	1	63	1.16
11472325--11472684	152	2.4	151	86	3	503	42	11	3	42	1.57
11473672--11473758	23	3.7	23	75	4	77	28	10	17	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11475051--11475429	189	2.0	189	98	0	740	25	24	18	31	1.98
11479744--11479793	26	1.9	26	91	0	82	48	8	20	24	1.76
11490920--11491000	27	3.1	26	80	5	83	22	18	22	37	1.95
11495197--11495298	42	2.4	42	88	0	159	25	24	9	40	1.86
11502172--11502347	42	4.2	42	82	9	189	22	26	10	40	1.87
11516906--11516939	16	2.1	16	100	0	68	38	11	17	32	1.86
11522199--11522245	24	2.0	22	84	8	58	42	6	12	38	1.69
11523083--11523112	14	2.1	14	93	0	51	30	6	20	43	1.77
11523280--11523331	19	2.7	19	82	8	61	59	5	0	34	1.21
11523363--11523414	8	5.8	9	78	15	54	76	1	1	19	0.97
11523360--11523413	20	2.9	18	79	12	65	75	1	1	20	0.98
11523382--11523416	16	2.1	17	94	5	63	77	0	2	20	0.90
11523360--11523421	17	3.3	18	77	22	65	72	1	1	24	1.02
11523713--11523753	21	2.0	21	90	9	66	53	9	12	24	1.68
11527770--11527814	22	2.0	22	86	0	63	33	8	11	46	1.70
11530958--11531021	30	2.1	30	82	5	76	40	14	0	45	1.44
11530972--11531030	30	2.0	29	87	6	84	38	13	0	47	1.43
11538715--11538748	12	2.8	12	90	0	50	5	0	41	52	1.25
11542462--11542680	37	5.9	37	84	1	269	17	22	31	27	1.97
11554270--11554317	17	2.8	17	90	3	69	70	4	16	8	1.27
11561031--11561096	3	22.0	3	76	17	57	66	1	31	0	1.01
11561031--11561096	15	4.4	15	80	5	80	66	1	31	0	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571046--11571114	3	24.0	3	77	21	60	65	1	33	0	1.02
11571046--11571115	28	2.5	28	86	6	88	65	1	32	0	1.01
11573038--11573088	25	2.0	25	96	0	93	35	11	21	31	1.90
11574980--11575033	21	2.6	21	79	5	56	42	27	14	14	1.85
11580980--11581028	21	2.3	21	79	10	55	28	12	32	26	1.92
11584199--11584352	61	2.6	58	85	3	200	33	9	25	31	1.88
11584407--11584504	28	3.5	28	75	9	92	28	18	23	29	1.98
11588352--11588435	38	2.2	38	80	4	98	33	23	16	26	1.96
11591998--11592065	27	2.5	28	83	7	86	35	17	23	23	1.95
11592467--11592513	23	2.0	23	83	0	58	38	8	25	27	1.85
11596440--11596486	22	2.1	22	84	7	60	40	0	36	23	1.55
11596417--11596486	11	6.5	11	72	8	54	44	0	32	22	1.53
11596644--11596704	28	2.2	28	84	0	77	49	16	4	29	1.66
11598844--11598911	31	2.2	32	81	2	75	39	5	8	45	1.60
11599225--11599260	18	2.0	18	88	0	54	38	5	0	55	1.23
11599385--11599549	84	2.0	82	90	4	260	30	15	16	37	1.90
11599469--11599868	61	6.9	57	77	15	378	30	21	16	31	1.95
11599469--11599898	116	3.7	113	85	7	546	30	20	16	32	1.95
11599815--11599981	85	2.0	84	90	4	266	30	15	16	37	1.90
11599700--11600099	202	2.0	198	86	4	552	31	19	16	33	1.94
11599900--11600302	61	6.8	59	80	10	430	30	22	16	31	1.95
11599900--11600302	118	3.4	115	85	7	506	30	22	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11599308--11600203	432	2.1	432	98	1	1742	30	20	16	31	1.95
11604026--11604074	12	3.8	12	75	19	53	51	0	8	40	1.32
11604205--11604357	84	1.8	84	87	2	229	37	6	4	50	1.49
11604299--11604431	66	2.0	66	97	0	248	37	5	5	51	1.47
11604367--11604636	88	3.2	85	83	10	349	38	6	4	51	1.46
11604797--11604848	20	2.6	20	84	6	70	13	32	26	26	1.94
11606920--11607215	147	2.0	147	99	0	583	23	30	25	20	1.99
11607223--11607314	30	3.1	31	80	12	102	27	6	4	61	1.39
11608184--11608346	51	3.1	52	78	11	179	29	17	23	29	1.97
11608292--11608665	59	6.3	59	73	11	262	34	15	18	31	1.93
11611318--11611355	19	2.0	20	85	10	53	21	7	36	34	1.82
11612357--11612438	31	2.6	31	81	12	89	50	9	12	28	1.71
11616108--11616160	27	2.0	27	96	0	97	30	9	15	45	1.77
11617472--11617507	17	2.1	17	100	0	72	30	25	5	38	1.78
11624570--11624597	12	2.3	12	100	0	56	39	7	0	53	1.28
11627146--11627397	30	8.5	30	80	8	241	35	1	26	35	1.68
11627146--11627397	59	4.2	59	77	10	194	35	1	26	35	1.68
11627201--11627397	59	3.3	58	84	6	236	34	2	29	34	1.69
11629502--11629624	48	2.6	48	84	2	149	22	21	16	39	1.92
11629803--11630535	49	14.9	50	74	6	485	18	30	17	33	1.94
11629829--11630549	99	7.3	99	78	4	661	18	31	17	32	1.94
11629829--11630495	198	3.4	197	81	2	755	18	31	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11634746--11635043	30	10.1	29	78	10	214	35	1	27	36	1.66
11634746--11635074	59	5.6	59	75	11	219	35	1	27	36	1.66
11634928--11635062	58	2.3	59	84	2	164	36	0	28	34	1.63
11634853--11635087	30	8.0	29	81	5	152	35	1	28	34	1.67
11638876--11638905	15	2.1	15	93	6	53	76	0	6	16	0.99
11639238--11639262	3	8.3	3	100	0	50	32	0	0	68	0.90
11639841--11639866	5	5.2	5	100	0	52	23	19	19	38	1.93
11652471--11652516	20	2.4	19	89	7	67	69	0	30	0	0.89
11665123--11665171	25	2.0	25	91	0	80	55	4	24	16	1.59
11666879--11666916	19	2.0	20	89	5	60	47	0	28	23	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135