genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  110  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33290408--33290448	18	2.2	19	86	4	57	39	0	2	58	1.11
33292177--33292215	19	2.1	19	85	9	53	51	0	0	48	1.00
33297385--33297428	22	2.0	22	81	0	52	25	0	13	61	1.32
33298610--33299066	54	8.5	54	80	1	360	24	22	16	36	1.94
33298611--33299034	108	3.9	108	82	0	445	25	21	16	36	1.94
33298612--33299066	162	2.8	161	81	1	471	24	22	16	36	1.94
33299303--33299347	23	2.0	23	86	0	63	31	13	20	35	1.91
33299571--33299685	58	2.0	58	89	3	178	46	18	0	35	1.49
33300792--33300891	29	3.4	29	92	2	164	49	1	0	50	1.07
33300852--33300894	20	2.0	22	91	8	72	53	0	0	46	1.00
33302158--33302199	6	7.0	6	100	0	84	66	16	16	0	1.25
33310026--33310067	12	3.1	14	80	13	52	33	0	2	64	1.07
33311379--33311418	5	8.0	5	100	0	80	40	0	60	0	0.97
33317129--33317175	6	7.8	6	83	9	51	44	0	36	19	1.51
33317607--33317645	19	2.1	19	100	0	78	41	10	15	33	1.81
33319101--33319138	6	6.3	6	100	0	76	31	34	15	18	1.92
33320027--33320064	18	2.1	18	85	9	51	52	5	26	15	1.64
33327791--33327841	23	2.2	23	85	0	66	29	1	5	62	1.29
33330455--33330502	16	3.2	15	82	8	62	52	0	0	47	1.00
33337651--33337697	23	2.0	23	95	0	85	23	21	10	44	1.83
33341063--33341329	89	3.0	89	94	0	462	32	14	17	34	1.91
33347635--33347686	18	2.9	18	97	0	95	44	17	17	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33349523--33349556	17	2.0	17	94	0	59	29	32	0	38	1.58
33351558--33351656	50	2.0	50	82	7	121	56	7	2	34	1.38
33354756--33354827	29	2.5	31	80	13	89	29	9	26	34	1.88
33354778--33355022	29	8.3	30	73	12	159	32	3	28	35	1.75
33354813--33355070	29	8.7	30	71	13	153	34	2	26	36	1.71
33354794--33355070	59	4.7	58	77	8	206	33	3	26	36	1.75
33354990--33355071	30	2.8	29	76	9	85	37	4	23	34	1.76
33356028--33356100	27	2.8	26	75	10	76	42	1	1	54	1.17
33356858--33356923	17	3.8	17	78	4	60	51	6	4	37	1.47
33356866--33356900	18	1.9	18	94	0	61	54	0	2	42	1.15
33357450--33357634	39	4.7	39	69	0	118	25	17	29	27	1.98
33357714--33357885	51	3.4	51	66	9	136	32	17	16	33	1.92
33357699--33357900	101	2.0	101	89	0	305	32	18	14	34	1.91
33357979--33358857	49	18.1	49	70	11	511	16	26	20	36	1.93
33358175--33358857	97	7.0	98	85	4	764	15	26	20	37	1.93
33358028--33358696	145	4.6	144	75	10	524	15	26	20	37	1.93
33358021--33358502	242	2.0	243	89	0	732	15	27	19	36	1.92
33358255--33358857	194	3.1	192	86	4	852	15	26	20	37	1.93
33358255--33358857	291	2.1	290	88	2	897	15	26	20	37	1.93
33365185--33365318	29	4.6	28	80	10	117	31	8	26	33	1.86
33365185--33365377	59	3.3	60	81	9	197	32	7	26	34	1.84
33365213--33365464	29	8.6	30	76	15	185	34	5	25	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33371301--33371368	31	2.2	31	94	0	118	44	10	11	33	1.75
33374818--33374879	25	2.5	24	77	15	63	32	1	4	61	1.27
33377509--33377562	28	1.9	28	81	7	65	24	3	11	61	1.46
33383418--33383467	26	1.9	26	91	0	82	54	10	12	24	1.67
33385041--33385075	18	2.0	17	88	5	52	45	8	0	45	1.34
33389301--33389340	20	2.0	20	85	0	53	47	0	0	52	1.00
33399225--33399275	18	2.8	18	77	13	50	37	3	1	56	1.29
33399304--33399365	19	3.2	18	82	13	79	37	4	0	58	1.20
33400044--33400104	28	2.2	28	100	0	122	26	0	9	63	1.25
33400491--33400547	23	2.5	23	88	0	87	29	26	21	22	1.99
33407046--33407092	15	3.3	14	82	11	51	21	4	4	70	1.22
33408001--33408064	13	4.6	13	82	5	65	78	3	17	1	0.96
33410032--33410066	17	2.1	17	89	10	54	65	5	0	28	1.15
33411093--33411202	30	3.7	30	80	11	118	40	1	24	33	1.66
33411095--33411225	30	4.4	30	78	12	117	38	1	25	35	1.65
33411095--33411231	59	2.3	59	83	3	159	37	1	26	35	1.66
33412590--33412664	37	2.0	37	94	5	134	26	21	17	34	1.95
33413191--33413399	85	2.5	85	80	3	226	24	20	15	39	1.91
33412791--33413315	208	2.5	207	84	2	640	23	20	16	39	1.92
33413632--33414600	49	19.7	49	73	5	614	19	28	16	34	1.94
33413619--33414588	99	9.9	99	72	10	336	19	28	17	34	1.94
33413619--33413901	100	2.8	98	81	6	304	16	31	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33413715--33414598	148	6.0	147	75	8	609	20	28	16	34	1.95
33413740--33414600	99	8.8	99	73	8	517	20	28	16	34	1.94
33415548--33415614	20	3.4	19	81	16	75	2	19	0	77	0.89
33415548--33415615	19	3.5	20	77	15	70	2	19	0	77	0.89
33415541--33415631	6	14.2	6	73	17	58	4	17	0	78	0.92
33415546--33415608	15	4.5	15	77	11	55	3	19	0	77	0.90
33415577--33415630	23	2.4	21	85	14	72	7	12	0	79	0.92
33416242--33416309	30	2.3	30	97	0	127	25	20	13	41	1.88
33420432--33420587	30	5.2	29	78	7	143	39	0	25	34	1.61
33420432--33420587	60	2.6	60	82	3	190	39	0	25	34	1.61
33421552--33421609	30	1.9	30	86	6	82	56	0	3	39	1.16
33421641--33421715	37	2.1	37	87	9	111	64	1	1	33	1.11
33421670--33421700	7	4.4	7	95	0	53	67	0	0	32	0.91
33424875--33424899	3	8.3	3	100	0	50	32	0	0	68	0.90
33428036--33428066	15	2.1	15	93	0	53	51	19	3	25	1.62
33430049--33430088	21	1.9	21	89	0	62	50	2	0	47	1.14
33430650--33430732	6	14.0	6	75	15	75	43	2	1	53	1.21
33430666--33430723	11	4.9	11	76	15	53	41	3	0	55	1.17
33430650--33430727	14	5.6	14	73	22	58	41	2	1	55	1.22
33430657--33430743	31	2.8	31	79	5	88	45	3	1	49	1.26
33430659--33430724	25	2.8	23	82	8	78	42	3	1	53	1.25
33431471--33431511	3	13.0	3	85	10	55	63	7	0	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33431474--33431511	10	3.9	10	89	3	60	63	7	0	28	1.23
33432582--33432914	30	11.1	30	88	0	436	37	24	2	34	1.70
33433952--33434008	29	2.0	29	89	0	87	54	8	0	36	1.32
33439488--33439532	19	2.3	20	84	3	65	44	0	2	53	1.13
33442760--33442802	22	2.0	22	90	0	68	20	39	20	18	1.93
33442827--33442877	24	2.1	24	96	0	93	17	35	19	27	1.94
33442870--33442904	18	1.9	18	88	11	54	11	34	20	34	1.88
33448956--33449002	24	2.0	24	82	0	58	46	17	23	12	1.82
33456686--33456878	98	2.0	98	92	0	323	35	18	29	17	1.94
33456688--33456870	49	3.7	49	75	5	181	34	18	28	18	1.94
33456882--33457289	49	8.2	50	75	5	251	35	18	27	18	1.94
33457053--33457342	100	2.9	99	81	5	300	34	18	29	16	1.94
33457788--33457819	12	2.7	12	95	0	55	50	0	0	50	1.00
33461557--33461774	59	3.7	59	86	4	300	38	5	25	31	1.77
33461557--33461745	29	6.5	29	69	12	111	38	4	26	30	1.77
33461669--33461774	29	3.7	29	69	16	76	38	5	25	30	1.79
33461756--33461958	30	6.7	30	90	0	298	33	2	25	37	1.71
33461556--33461811	117	2.2	118	81	8	310	39	5	25	30	1.77
33461757--33461958	60	3.3	60	92	0	332	33	2	25	38	1.71
33462029--33462371	161	2.1	162	87	5	498	46	12	15	25	1.80
33462098--33462444	161	2.2	159	80	6	389	50	12	15	22	1.77
33463320--33463368	16	3.1	16	74	11	55	32	0	4	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33463878--33463923	15	3.1	15	100	0	92	13	13	54	19	1.71
33464078--33464166	6	14.8	6	76	13	76	49	2	0	48	1.13
33464070--33464157	26	3.5	24	79	10	70	45	2	1	51	1.21
33464110--33464166	16	3.6	16	79	13	73	56	3	0	40	1.17
33469296--33469358	24	2.7	23	85	2	81	25	12	11	50	1.73
33476278--33476705	212	2.0	212	97	0	811	28	13	17	40	1.88
33478224--33478274	21	2.4	22	83	6	61	25	11	27	35	1.91
33479100--33479198	38	2.6	38	79	9	112	38	5	9	47	1.57
33481898--33482062	29	5.6	29	66	23	94	35	2	27	33	1.70
33481898--33482092	59	3.3	59	87	3	279	35	2	28	34	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135