genome.fa.s2.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  99  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30823020--30823053	3	11.3	3	100	0	68	67	0	0	32	0.91
30834595--30834637	22	2.0	21	86	4	59	46	0	0	53	1.00
30834595--30834677	20	4.0	22	70	22	63	49	0	0	50	1.00
30834619--30834686	9	7.2	9	77	21	52	54	0	0	45	0.99
30835484--30835531	7	6.9	7	82	17	64	41	0	56	2	1.11
30835474--30835531	21	2.9	19	81	18	73	43	0	55	1	1.10
30835474--30835523	7	6.1	8	84	13	50	42	0	56	2	1.11
30835474--30835537	23	2.7	22	77	22	60	42	0	56	1	1.09
30835477--30835543	14	4.9	14	77	12	59	41	0	56	1	1.08
30835486--30835546	29	2.1	30	84	9	81	40	0	55	3	1.16
30844392--30844421	4	7.5	4	100	0	60	0	76	23	0	0.78
30845811--30845857	18	2.5	19	79	6	51	31	17	8	42	1.79
30848839--30848870	3	10.7	3	100	0	64	68	0	0	31	0.90
30860280--30860355	20	3.8	21	79	8	77	38	25	18	18	1.93
30860276--30860336	13	4.6	13	74	11	61	42	21	18	18	1.89
30866500--30866552	17	3.2	16	80	17	56	52	0	1	45	1.11
30875052--30875123	30	2.4	30	86	6	92	33	8	13	44	1.74
30883541--30883601	21	2.9	21	78	4	61	44	6	14	34	1.72
30885024--30885060	18	2.1	18	100	0	74	37	21	0	40	1.54
30889231--30889293	30	2.1	29	82	8	74	39	1	9	49	1.45
30896831--30896867	19	2.0	19	89	5	58	48	8	8	35	1.62
30899805--30899842	14	2.7	14	76	15	51	26	0	7	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30903678--30903726	15	3.3	15	83	8	64	51	0	0	48	1.00
30903737--30903820	43	1.9	44	92	2	143	41	7	0	51	1.29
30907945--30907984	19	2.1	19	85	0	53	50	5	12	32	1.62
30912953--30912982	15	1.9	16	93	6	53	40	0	20	40	1.52
30919006--30919039	18	2.0	17	88	11	52	58	0	0	41	0.98
30919007--30919048	17	2.4	17	84	11	50	66	0	0	33	0.92
30919218--30919249	15	2.1	15	94	0	55	34	0	0	65	0.93
30920022--30920099	9	8.4	9	73	16	52	69	1	1	28	1.04
30920038--30920089	17	2.9	17	77	5	50	67	0	1	30	1.02
30920055--30920104	19	2.5	20	78	18	59	64	2	0	34	1.05
30920012--30920121	29	3.8	29	70	18	77	63	2	0	32	1.15
30920196--30920263	28	2.3	30	82	12	88	57	0	2	39	1.14
30920218--30920349	49	2.7	51	77	15	143	56	1	2	39	1.21
30920279--30920365	19	4.6	19	78	16	76	60	0	1	37	1.04
30920199--30920365	10	17.6	9	69	19	83	58	1	2	38	1.19
30922704--30922772	21	3.2	21	89	4	102	44	34	0	20	1.52
30922755--30922806	20	3.0	16	77	20	59	46	32	0	21	1.52
30922734--30922806	36	2.0	37	86	2	103	46	31	0	21	1.52
30922762--30922828	20	3.3	20	91	4	107	47	34	1	16	1.56
30922803--30922837	14	2.4	15	90	4	54	48	31	5	14	1.67
30922882--30922982	7	15.0	7	71	8	84	14	27	25	31	1.95
30922898--30922985	13	7.2	13	75	17	89	13	25	25	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30922882--30922982	20	5.0	21	79	6	84	14	27	25	31	1.95
30924019--30924050	3	11.0	3	93	6	57	31	0	0	68	0.90
30925016--30925193	58	3.1	58	90	1	277	32	0	19	47	1.50
30925413--30925457	23	2.0	23	86	0	63	35	20	13	31	1.91
30927626--30927667	22	2.0	21	85	4	57	28	4	0	66	1.12
30928048--30928125	29	2.8	28	80	7	86	33	2	3	60	1.28
30928056--30928136	39	2.1	39	82	13	96	35	2	4	56	1.34
30928655--30928680	5	5.2	5	100	0	52	38	19	19	23	1.93
30928883--30928954	33	2.1	34	89	2	110	54	0	16	29	1.43
30931541--30931582	13	3.1	13	89	6	57	78	0	21	0	0.75
30931541--30931572	17	1.9	16	93	6	55	84	0	15	0	0.63
30931736--30931770	18	1.9	18	94	0	61	22	2	14	60	1.48
30931751--30931851	35	2.8	34	77	14	87	27	0	7	64	1.21
30931837--30931874	11	3.2	12	85	7	51	23	0	10	65	1.23
30931789--30931874	12	7.1	12	67	25	56	23	0	10	66	1.22
30934297--30934388	45	2.0	45	91	0	148	30	25	21	22	1.99
30934635--30934700	28	2.4	27	80	7	71	45	30	6	18	1.73
30937709--30937748	4	9.8	4	84	15	55	0	25	0	75	0.81
30937700--30937749	25	2.0	26	92	4	84	0	28	0	72	0.86
30939445--30939520	40	1.9	40	82	15	95	61	2	6	28	1.34
30943495--30943612	63	2.0	59	82	12	143	38	11	16	33	1.86
30946554--30946591	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30950512--30950558	23	2.0	23	100	0	94	65	8	12	12	1.46
30954779--30954808	15	2.0	15	93	0	51	23	0	3	73	0.98
30954820--30954887	23	2.9	23	77	2	73	29	11	16	42	1.83
30959711--30959786	21	3.6	21	89	3	116	46	11	21	21	1.83
30959713--30959779	22	3.1	22	89	4	109	46	10	22	20	1.81
30965950--30965997	19	2.5	19	79	3	51	31	2	2	64	1.16
30974025--30974077	27	2.0	27	84	0	70	22	20	32	24	1.98
30974130--30974176	24	2.0	24	95	0	85	46	14	17	21	1.83
30983924--30983969	10	4.3	11	86	8	60	78	0	21	0	0.76
30987186--30987254	14	5.0	14	76	3	68	50	27	0	21	1.49
30987194--30987254	28	2.2	27	94	2	104	52	27	0	19	1.46
30995286--30995327	21	2.0	21	95	4	77	57	14	0	28	1.38
30995637--30995667	12	2.6	12	94	0	53	67	3	0	29	1.06
30995709--30995843	3	43.3	3	77	12	73	0	34	0	65	0.93
30995707--30995843	57	2.4	57	95	2	242	0	34	0	65	0.93
30995739--30995829	4	23.2	4	81	8	75	0	34	0	65	0.93
30997722--30997815	22	4.4	22	73	18	74	69	5	3	22	1.23
30997786--30997815	11	2.7	11	100	0	60	73	6	0	20	1.05
30997856--30997922	19	3.4	19	74	13	64	68	7	2	20	1.28
31002017--31002090	36	2.1	36	94	0	130	47	17	12	22	1.81
31002608--31002683	21	3.6	21	75	7	73	23	26	17	32	1.96
31003383--31003449	18	3.7	18	77	0	62	29	22	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31006442--31006480	18	2.2	18	85	0	51	43	17	0	38	1.50
31018931--31019022	34	2.6	34	75	11	96	43	8	25	22	1.82
31019204--31019268	29	2.2	29	83	5	78	29	9	4	56	1.50
31022374--31022409	3	12.0	3	93	0	63	30	33	2	33	1.72
31025290--31025337	16	3.1	16	77	14	55	41	0	4	54	1.20
31027262--31027314	23	2.3	23	84	12	65	58	0	9	32	1.30
31029470--31029914	194	2.3	194	83	3	549	28	19	25	25	1.99
31031524--31031579	21	2.7	21	85	0	67	28	23	12	35	1.91
31031795--31031825	13	2.4	13	94	0	53	38	22	0	38	1.54
31032260--31032485	41	5.4	44	74	12	131	23	26	11	38	1.88
31032254--31032485	84	2.8	83	80	12	251	23	26	11	38	1.88
31032334--31032485	41	3.7	42	74	10	134	24	27	11	36	1.90
31039406--31039444	17	2.2	18	86	4	53	51	5	2	41	1.38
31039500--31039681	86	2.1	85	81	10	199	36	22	8	32	1.85
31039725--31039829	48	2.2	48	83	10	126	65	1	1	30	1.14
31039774--31039877	28	3.7	27	73	17	95	66	1	3	27	1.20
31039775--31039848	21	3.7	19	77	12	69	66	2	4	27	1.23
31039786--31039885	19	5.1	20	71	10	71	64	2	4	30	1.23
31039775--31039922	59	2.5	59	81	11	155	64	2	5	27	1.26
31039720--31039867	9	15.8	9	68	18	61	65	2	3	29	1.20
31044750--31044791	18	2.4	18	88	11	61	42	0	2	54	1.13
31048884--31048997	43	2.7	43	90	1	167	27	5	5	62	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31049511--31049671	61	2.6	61	84	4	198	32	11	18	36	1.87
31052050--31052103	27	2.0	27	96	0	99	35	14	20	29	1.93
31053844--31053877	17	2.0	17	88	0	50	35	5	0	58	1.22
31056648--31056761	57	2.0	57	87	0	165	27	14	18	40	1.89
31057586--31057631	22	2.1	22	84	8	58	32	23	15	28	1.95
31060452--31060492	20	2.0	21	86	13	59	26	9	9	53	1.65
31062992--31063088	51	1.9	51	81	8	117	40	17	2	40	1.61
31063105--31063154	21	2.4	21	90	3	75	64	0	0	36	0.94
31063788--31063826	2	19.5	2	89	10	62	2	48	0	48	1.15
31073818--31073848	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135