genome.fa.s2.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  119  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35770992--35771195	90	2.3	89	85	5	277	34	6	19	39	1.78
35771413--35771949	279	1.9	278	86	4	764	37	9	12	40	1.76
35772599--35772650	22	2.4	21	75	12	52	11	15	9	63	1.52
35774029--35774158	21	6.2	21	73	15	99	7	4	19	68	1.32
35774143--35774210	12	5.8	12	75	3	57	8	2	14	73	1.19
35774116--35774187	23	3.2	22	74	20	67	9	2	13	73	1.19
35774116--35774215	47	2.2	45	83	3	119	10	3	17	70	1.28
35774180--35774232	20	2.4	23	81	15	67	13	1	18	66	1.34
35792861--35792893	9	3.6	9	95	4	57	78	0	0	21	0.75
35792860--35792981	18	6.8	18	64	17	58	63	1	2	32	1.18
35792919--35793004	43	2.0	42	81	2	100	61	2	2	33	1.21
35793015--35793057	21	2.0	22	90	4	70	51	6	4	37	1.50
35793017--35793063	21	2.2	21	85	7	60	57	6	4	31	1.43
35793010--35793110	49	2.0	51	81	7	118	59	4	2	32	1.34
35793521--35793576	19	3.2	19	70	14	57	48	1	0	50	1.11
35793527--35793574	15	2.9	15	77	17	51	54	2	0	43	1.12
35793896--35793928	13	2.4	14	85	5	50	51	0	6	42	1.26
35794635--35795033	60	6.6	61	84	4	502	29	21	14	34	1.93
35794636--35795033	121	3.3	121	86	3	532	28	21	14	34	1.93
35794991--35795080	46	1.9	46	84	2	117	30	14	13	42	1.84
35795105--35795311	57	3.5	59	81	11	242	35	14	18	30	1.91
35797898--35797944	15	3.2	15	78	6	60	34	0	4	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35797897--35797942	14	3.2	14	78	6	56	34	0	4	60	1.16
35798532--35798564	2	16.5	2	100	0	66	0	48	0	51	1.00
35803589--35803627	19	1.9	19	85	10	51	48	2	5	43	1.38
35805724--35805777	25	2.3	25	84	9	69	40	1	0	57	1.09
35805809--35805869	10	6.1	10	75	5	61	31	0	3	65	1.09
35805789--35805846	22	2.7	21	84	5	71	34	0	3	62	1.12
35805794--35805847	20	2.6	21	85	8	67	35	0	3	61	1.14
35809972--35809996	3	8.3	3	100	0	50	32	0	0	68	0.90
35821389--35821452	21	2.9	22	77	9	67	42	7	7	42	1.63
35828479--35828520	17	2.5	17	100	0	84	19	14	7	59	1.57
35840094--35840164	26	2.7	25	70	16	63	53	0	0	46	1.00
35844930--35845057	52	2.5	52	81	0	148	26	14	23	35	1.93
35851526--35851559	17	2.0	17	94	0	59	20	11	20	47	1.81
35852116--35852302	52	3.6	52	88	0	257	28	14	23	33	1.94
35858733--35858916	90	2.0	91	92	1	307	20	18	10	50	1.76
35859223--35859284	30	2.1	30	100	0	124	38	9	16	35	1.81
35872509--35872565	4	14.2	4	85	7	71	66	0	33	0	0.92
35872509--35872565	20	2.8	20	84	7	80	66	0	33	0	0.92
35872601--35872649	24	2.0	24	84	0	62	32	2	2	63	1.17
35875794--35875840	21	2.2	21	88	7	69	23	19	36	21	1.95
35875848--35876083	95	2.5	94	91	4	381	48	14	1	35	1.54
35876047--35876089	21	2.1	21	86	4	61	58	13	2	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35876430--35876479	18	2.8	18	77	14	59	0	38	0	62	0.96
35876688--35876740	27	2.0	27	88	0	79	11	33	22	32	1.90
35878424--35878580	84	1.9	85	81	9	196	40	5	7	47	1.54
35884833--35884912	39	2.0	40	92	2	135	30	21	17	31	1.96
35884837--35884929	39	2.4	38	83	7	98	30	22	17	30	1.96
35896621--35896711	34	2.6	34	79	6	85	54	2	21	20	1.55
35903796--35903834	15	2.5	16	83	4	53	61	0	0	38	0.96
35918922--35918983	33	1.9	32	93	6	108	22	6	11	59	1.54
35930233--35930271	15	2.5	16	83	4	53	61	0	0	38	0.96
35935706--35935735	15	2.0	15	100	0	60	13	40	6	40	1.71
35951651--35951737	44	2.1	41	81	14	99	24	9	12	54	1.67
35952755--35952792	14	2.6	16	88	12	55	78	10	0	10	0.95
35956207--35956284	22	3.2	25	75	12	90	14	26	21	37	1.92
35956206--35956297	47	2.0	47	86	4	132	14	25	20	40	1.90
35958264--35958387	44	2.8	44	93	1	214	40	8	14	36	1.77
35959287--35959318	3	10.7	3	100	0	64	65	0	0	34	0.93
35959941--35960011	29	2.4	29	90	0	106	43	16	11	28	1.83
35962725--35962766	16	2.6	17	85	7	52	50	0	0	50	1.00
35967725--35967890	58	2.9	58	81	8	196	52	3	1	42	1.27
35976219--35976256	20	1.9	20	88	0	58	28	0	2	68	1.03
35977702--35977738	2	18.5	2	100	0	74	51	0	48	0	1.00
35989235--35989304	30	2.3	30	97	0	131	12	34	32	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35996294--35996351	29	1.9	31	86	6	84	31	1	1	65	1.13
36000547--36000600	20	2.8	19	78	10	65	50	3	1	44	1.30
36005548--36005581	17	1.9	18	88	5	52	61	0	2	35	1.11
36005792--36005838	20	2.4	20	86	10	62	29	0	6	63	1.19
36008383--36008429	16	2.9	16	81	6	51	59	4	2	34	1.29
36012570--36012648	37	2.1	38	85	2	106	31	26	20	21	1.98
36014937--36014973	19	2.0	19	89	5	58	43	0	2	54	1.14
36014937--36014990	19	2.9	18	83	8	56	44	0	3	51	1.19
36015134--36015177	22	2.0	21	82	4	52	59	11	0	29	1.32
36018111--36018151	19	2.2	19	86	8	57	51	0	0	48	1.00
36021232--36021258	4	6.8	4	100	0	54	25	0	74	0	0.83
36037895--36037929	15	2.3	15	90	0	52	8	2	71	17	1.23
36045966--36046116	79	1.9	80	88	1	232	41	7	6	43	1.60
36050243--36050270	3	9.3	3	100	0	56	35	0	0	64	0.94
36050397--36050430	15	2.3	15	89	0	50	67	0	0	32	0.91
36050389--36050439	23	2.2	23	82	0	57	60	1	1	35	1.19
36051607--36051631	7	3.6	7	100	0	50	12	60	0	28	1.32
36054488--36054512	6	4.2	6	100	0	50	16	36	0	48	1.46
36054567--36054620	26	2.1	26	96	0	99	27	33	7	31	1.84
36056020--36056062	23	1.9	22	85	4	59	27	0	0	72	0.85
36063878--36063905	3	9.3	3	100	0	56	32	0	67	0	0.91
36064976--36065023	10	4.9	10	82	5	53	56	0	2	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36064975--36065023	20	2.5	20	87	9	66	55	0	2	42	1.11
36067495--36067552	15	3.6	17	71	15	52	31	13	1	53	1.50
36071690--36071722	6	5.5	6	92	0	57	18	36	12	33	1.88
36073832--36073882	19	2.7	19	75	0	57	49	0	0	50	1.00
36078094--36078171	28	2.7	29	84	11	106	47	0	1	51	1.09
36078953--36079064	20	5.9	20	65	26	64	50	1	0	48	1.11
36078954--36079041	45	2.0	45	97	0	167	52	0	0	47	1.00
36079433--36079469	16	2.3	17	81	13	51	59	2	0	37	1.12
36084857--36084882	13	2.0	13	100	0	52	46	0	0	53	1.00
36084849--36084882	7	4.9	7	89	10	52	44	0	0	55	0.99
36085044--36085125	29	2.8	29	76	9	69	36	12	10	40	1.78
36085279--36085336	30	2.0	29	82	3	71	50	6	8	34	1.60
36085333--36085364	15	2.1	15	94	0	55	37	18	9	34	1.83
36093096--36093146	25	2.0	25	92	0	84	15	19	3	60	1.50
36093948--36094438	7	70.1	7	98	0	912	28	14	55	1	1.47
36097379--36097487	53	2.1	53	100	0	218	25	1	32	40	1.66
36102306--36102344	20	1.9	21	89	5	62	56	5	2	35	1.35
36112576--36112603	3	9.3	3	100	0	56	32	35	0	32	1.58
36116425--36116454	15	1.9	16	93	6	53	60	0	26	13	1.34
36137188--36137233	25	1.9	25	86	8	69	36	4	4	54	1.40
36137219--36137247	13	2.2	13	100	0	58	34	0	6	58	1.25
36138036--36138203	83	2.0	83	95	0	300	32	13	10	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36139548--36139953	41	9.9	40	83	7	392	26	23	26	23	2.00
36139550--36140010	42	11.3	41	79	10	358	27	23	26	23	2.00
36142296--36142967	49	13.2	49	77	12	586	46	2	5	45	1.39
36142450--36142580	26	5.3	26	66	22	84	48	0	5	45	1.30
36142301--36142853	161	3.5	160	82	8	776	46	2	5	45	1.40
36142297--36142967	307	2.2	307	95	0	1200	46	2	5	45	1.39
36142879--36142989	8	13.1	8	68	23	59	45	0	3	51	1.18
36142296--36142998	258	2.7	258	83	7	781	45	2	5	46	1.39
36142890--36142983	36	2.8	36	80	15	103	45	0	4	50	1.21
36143018--36143111	8	11.8	8	71	22	65	43	1	3	52	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135