Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  10  of  206  ( 24623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2970861--2970895
18
1.9
18
88
11
54
34
2
0
62
1.10
2971649--2971720
36
2.0
36
97
0
135
47
12
2
37
1.56
2973352--2973463
56
2.0
56
96
0
206
25
35
3
35
1.73
2979900--2979944
17
2.6
18
82
7
65
37
6
0
55
1.26
2982917--2982941
2
12.5
2
100
0
50
52
0
0
48
1.00
2984116--2984170
22
2.5
22
77
11
67
61
12
10
14
1.56
2987311--2987389
27
2.9
27
79
5
79
21
31
12
34
1.91
2987872--2987938
9
7.4
9
84
0
89
44
23
5
25
1.76
2987872--2987938
27
2.5
27
95
0
116
44
23
5
25
1.76
2988033--2988076
18
2.4
18
88
0
61
13
2
43
40
1.57
2988594--2988806
9
22.2
9
66
17
65
60
1
6
31
1.32
2988823--2988858
10
3.6
10
85
14
56
27
2
0
69
1.02
2988989--2989047
10
6.3
10
78
11
54
27
3
0
69
1.04
2988978--2989054
18
4.2
19
83
8
81
25
3
1
68
1.14
2988978--2989038
19
3.3
18
78
13
63
26
3
1
68
1.14
2988998--2989064
9
7.9
8
74
14
55
26
4
0
68
1.08
2988988--2989111
25
4.6
26
74
15
101
30
3
0
66
1.08
2988999--2989110
52
2.1
51
82
14
138
29
3
0
66
1.08
2988996--2989118
26
4.6
27
74
17
105
30
3
0
66
1.07
2989223--2989499
93
3.0
89
80
10
278
33
8
15
41
1.78
2989223--2989482
92
2.8
95
79
13
260
34
8
15
41
1.78
3000306--3000474
90
1.9
90
85
4
234
30
22
17
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3000893--3000922
15
2.0
15
93
0
51
43
26
30
0
1.55
3024822--3024854
6
5.8
6
92
7
52
0
18
0
81
0.68
3024824--3024854
16
1.9
16
100
0
62
0
16
0
83
0.64
3030217--3030249
15
2.2
16
89
10
52
51
0
0
48
1.00
3030203--3030242
15
2.6
15
88
4
53
47
2
0
50
1.14
3030259--3030297
18
2.2
18
90
9
62
71
2
2
23
1.10
3039346--3039372
10
2.7
10
100
0
54
40
7
22
29
1.81
3039894--3039927
10
3.1
11
87
12
52
47
0
2
50
1.16
3041396--3041467
35
2.1
35
100
0
144
41
5
16
36
1.72
3046150--3046191
2
21.0
2
100
0
84
50
0
0
50
1.00
3049519--3049558
6
6.8
6
91
5
64
0
55
0
45
0.99
3049518--3049563
17
2.6
17
86
3
65
0
58
0
41
0.98
3052434--3052477
22
2.0
22
100
0
88
50
0
0
50
1.00
3052562--3052610
25
1.9
26
91
4
82
55
6
10
28
1.57
3052777--3052801
12
2.1
12
100
0
50
24
36
24
16
1.94
3052962--3053029
9
7.4
9
75
9
66
42
25
8
23
1.82
3060760--3060790
5
6.2
5
100
0
62
41
19
19
19
1.90
3061816--3061852
9
4.1
9
92
0
65
29
10
13
45
1.77
3063320--3063452
37
3.4
37
79
9
115
24
18
24
32
1.97
3063360--3063456
40
2.5
38
83
5
124
24
18
26
29
1.98
3072367--3072421
27
2.0
27
100
0
110
10
21
10
56
1.64
3078808--3078857
20
2.4
21
90
3
75
36
24
12
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3080894--3080923
2
15.0
2
100
0
60
50
0
0
50
1.00
3082645--3082682
20
1.9
19
89
5
58
42
0
2
55
1.14
3082649--3082688
20
2.0
20
85
0
53
47
0
2
50
1.14
3086347--3086381
3
11.7
3
100
0
70
0
34
31
34
1.58
3091862--3091894
15
2.3
15
90
10
52
60
0
0
39
0.97
3099167--3099204
2
19.0
2
100
0
76
50
0
0
50
1.00
3100218--3100248
3
10.3
3
100
0
62
67
0
0
32
0.91
3100983--3101007
2
12.5
2
100
0
50
48
0
0
52
1.00
3109787--3109841
3
18.0
3
77
20
53
30
1
1
65
1.13
3109787--3109851
23
3.0
22
77
18
73
27
1
3
67
1.14
3115027--3115084
30
1.9
30
100
0
116
34
6
10
48
1.64
3122116--3122153
19
2.0
19
89
0
58
68
5
0
26
1.11
3123821--3123885
20
3.2
20
69
16
51
38
7
24
29
1.83
3125729--3125763
17
2.1
17
94
0
61
22
17
14
45
1.84
3133253--3133561
82
4.0
81
87
6
375
27
21
15
35
1.93
3133377--3133561
37
5.0
37
92
1
291
27
20
14
38
1.91
3139783--3139815
13
2.6
13
90
4
50
48
6
0
45
1.27
3140002--3140064
27
2.3
27
86
5
83
19
28
31
20
1.97
3140244--3140306
27
2.3
27
83
5
83
19
30
30
20
1.97
3140328--3140405
28
2.8
28
75
11
79
17
1
8
71
1.18
3141938--3141962
12
2.1
12
100
0
50
48
0
44
8
1.32
3146777--3146801
11
2.3
11
100
0
50
16
24
0
60
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3154542--3154581
2
20.0
2
87
10
55
50
5
0
45
1.23
3156474--3156520
24
2.0
24
82
0
58
68
4
8
19
1.33
3160902--3160960
26
2.2
25
82
11
73
30
22
30
16
1.96
3160911--3160963
26
2.0
27
92
3
90
32
22
28
16
1.96
3161695--3161729
17
2.0
17
88
5
52
48
0
17
34
1.47
3162091--3162142
27
1.9
27
100
0
104
13
32
23
30
1.93
3162168--3162196
15
1.9
15
100
0
58
6
6
17
68
1.34
3162206--3162270
28
2.4
27
84
2
76
49
1
10
38
1.47
3165002--3165069
31
2.2
30
80
10
75
44
16
7
32
1.75
3165018--3165084
31
2.1
32
88
2
100
38
17
7
35
1.78
3170790--3170815
6
4.3
6
100
0
52
19
30
0
50
1.48
3179469--3179621
22
7.0
22
90
0
225
32
14
26
26
1.94
3186328--3186367
2
20.0
2
100
0
80
50
0
0
50
1.00
3196282--3196373
9
10.4
9
75
17
54
63
1
0
35
1.02
3196320--3196355
7
4.9
7
87
12
54
58
2
0
38
1.13
3197502--3197545
12
3.7
12
96
0
79
27
13
15
43
1.85
3198631--3198690
24
2.5
23
76
7
57
26
10
18
45
1.81
3203445--3204403
50
19.3
50
75
6
804
25
20
21
32
1.98
3203445--3204402
100
9.6
99
85
4
1173
25
20
21
32
1.98
3203445--3204302
198
4.3
198
91
1
1301
25
20
21
32
1.98
3203445--3204402
395
2.4
397
86
3
1356
25
20
21
32
1.98
3216992--3217033
16
2.8
16
78
10
52
57
11
9
21
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3218808--3218849
20
2.0
20
90
4
66
28
0
0
71
0.86
3218810--3218861
3
17.3
3
77
15
54
28
1
0
69
0.99
3218810--3218861
27
1.9
27
88
7
79
28
1
0
69
0.99
3218810--3218880
18
4.0
18
78
12
67
29
5
0
64
1.16
3218868--3218911
22
1.9
23
81
9
54
34
15
2
47
1.58
3221063--3221106
19
2.3
20
84
7
56
27
20
11
40
1.86
3223071--3223103
12
2.6
13
90
9
59
87
12
0
0
0.53
3223072--3223104
17
2.0
16
94
5
57
90
9
0
0
0.44
3224350--3224885
50
10.7
50
67
4
274
30
19
23
27
1.98
3224350--3225011
100
6.7
100
86
1
847
28
19
23
27
1.99
3224829--3225011
93
2.0
92
80
6
208
25
22
25
26
2.00
3226477--3226518
9
4.7
9
77
11
50
26
2
0
71
0.98
3226479--3226537
18
3.4
18
82
13
54
28
6
0
64
1.19
3227733--3227786
3
17.7
3
84
3
72
33
5
0
61
1.19
3227733--3227786
15
3.5
15
92
7
83
33
5
0
61
1.19
3228178--3228218
2
20.5
2
94
0
73
48
2
0
48
1.14
3228271--3228347
37
2.1
37
83
7
95
35
9
2
53
1.47
3228325--3228361
17
2.1
18
90
10
58
32
2
0
64
1.07
3231270--3231319
7
6.9
7
81
6
55
18
0
34
48
1.48
3231287--3231333
21
2.2
22
78
17
55
27
0
21
51
1.48
3247911--3248000
43
2.1
43
89
2
137
32
8
13
45
1.74
3253980--3254024
21
2.1
21
83
0
54
33
28
17
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3255434--3255497
23
2.7
24
78
7
69
28
10
18
42
1.84
3258313--3258379
25
2.7
25
83
4
82
28
14
28
28
1.96
3262293--3262539
84
2.9
86
85
6
324
31
12
8
46
1.71
3263770--3263828
15
3.9
15
76
8
66
33
10
3
52
1.52
3264649--3264674
7
3.7
7
100
0
52
84
0
0
15
0.62
3265197--3265244
23
2.1
23
100
0
96
29
8
8
54
1.60
3268029--3268082
27
2.0
27
81
0
63
35
1
27
35
1.68
3268870--3268901
15
2.2
15
94
5
57
28
18
9
43
1.81
3272891--3272950
5
12.2
5
76
16
54
41
0
1
56
1.09
3273104--3273139
19
1.9
19
94
5
65
72
0
13
13
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206