genome.fa.s2.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  111  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33034112--33034150	5	8.0	5	83	16	55	41	0	0	58	0.98
33036810--33036854	22	2.0	22	100	0	90	4	17	22	55	1.60
33041042--33041102	21	2.8	21	80	5	68	32	29	24	13	1.93
33042540--33042589	23	2.3	22	86	6	66	42	6	6	46	1.53
33042546--33042589	23	1.9	23	90	0	70	43	6	4	45	1.51
33044355--33044404	19	2.6	20	73	20	61	48	0	4	48	1.20
33047300--33047367	25	2.7	24	80	15	75	55	0	1	42	1.08
33048267--33048305	4	9.8	4	83	10	53	20	5	0	74	1.01
33054671--33054718	18	2.7	18	86	0	69	43	0	16	39	1.48
33058450--33058482	11	3.0	11	91	8	50	15	3	0	81	0.80
33061170--33061215	24	2.0	23	83	12	58	65	4	2	28	1.23
33061604--33061651	14	3.5	14	75	16	55	45	0	0	54	0.99
33074565--33074630	34	1.9	34	87	6	98	24	18	21	36	1.95
33074570--33074643	34	2.2	34	79	16	82	24	20	22	32	1.98
33075880--33075924	19	2.3	20	75	17	51	17	51	0	31	1.46
33078947--33079092	42	3.5	42	79	10	145	36	24	15	23	1.93
33079099--33079242	41	3.5	41	94	0	252	23	26	20	29	1.99
33079031--33079160	67	1.9	68	87	4	192	29	27	20	23	1.98
33081867--33081899	12	2.9	12	86	13	52	75	9	6	9	1.18
33091655--33091827	27	6.6	27	85	4	228	18	18	20	42	1.89
33091626--33091827	27	7.7	26	83	6	221	19	19	19	41	1.91
33091655--33091827	53	3.3	53	88	3	242	18	18	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33101047--33101106	27	2.2	27	82	5	77	25	40	16	18	1.91
33104825--33104883	11	5.2	11	75	20	50	42	0	35	22	1.54
33119640--33119702	31	2.0	32	84	3	83	46	11	9	33	1.72
33120027--33120070	20	2.2	19	84	8	52	50	4	2	43	1.35
33121099--33121139	20	2.0	22	85	9	59	51	4	0	43	1.23
33121223--33121272	20	2.6	19	84	6	57	42	2	8	48	1.44
33123564--33123658	45	2.1	45	96	1	174	31	18	30	18	1.96
33159440--33159546	41	2.6	40	83	4	133	22	28	16	31	1.96
33172522--33172667	41	3.6	41	83	5	188	21	26	17	34	1.95
33174986--33175029	20	2.2	20	87	0	61	22	25	4	47	1.70
33174996--33175041	20	2.3	20	92	0	74	23	26	2	47	1.63
33175088--33175154	24	2.8	24	82	8	91	34	22	20	22	1.97
33180137--33180189	21	2.6	21	93	3	90	13	49	7	30	1.69
33181372--33181397	9	2.9	9	100	0	52	69	11	7	11	1.37
33194959--33195071	46	2.5	46	80	2	129	21	23	10	45	1.82
33195052--33195431	45	8.4	45	82	2	399	22	21	17	39	1.92
33195052--33195431	90	4.2	90	85	3	446	22	21	17	39	1.92
33195052--33195431	135	2.8	135	85	2	469	22	21	17	39	1.92
33195223--33195484	45	5.8	45	76	8	139	23	20	14	41	1.90
33195053--33195481	135	3.2	135	83	2	407	22	20	16	40	1.91
33200312--33200388	29	2.6	29	83	2	100	19	29	12	37	1.89
33205878--33206110	27	8.7	27	84	0	261	37	20	18	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33205860--33206130	54	5.1	54	80	3	264	36	20	19	23	1.95
33206377--33206622	32	7.7	32	73	8	153	21	22	21	34	1.97
33206409--33206642	95	2.5	95	81	1	281	21	21	20	35	1.96
33206692--33206744	26	2.0	26	88	0	79	18	26	18	35	1.95
33211328--33211562	32	7.4	32	81	2	276	39	19	19	22	1.92
33211554--33211608	26	2.1	26	86	0	74	40	30	10	18	1.85
33211735--33211816	24	3.4	24	87	0	110	52	25	3	18	1.61
33211920--33212273	27	13.2	26	80	5	307	28	8	22	40	1.84
33211920--33212273	54	6.6	53	82	5	345	28	8	22	40	1.84
33211915--33212290	81	4.7	81	80	5	352	27	9	23	39	1.85
33211934--33212315	27	14.3	27	78	7	199	27	9	23	40	1.85
33218923--33219052	50	2.5	50	83	7	152	26	20	29	24	1.99
33218962--33219086	50	2.5	50	78	10	146	27	23	28	21	1.99
33229123--33229397	30	9.2	30	76	7	229	23	25	13	37	1.91
33251460--33251508	23	2.1	23	100	0	98	30	22	8	38	1.83
33265396--33265446	25	2.0	25	96	0	93	37	21	15	25	1.93
33285585--33285705	60	2.0	60	96	0	224	23	27	14	35	1.93
33288766--33288794	14	2.0	15	93	6	51	75	10	6	6	1.17
33295263--33295462	32	6.3	32	85	0	249	37	20	19	22	1.94
33295276--33295466	96	2.0	96	91	0	310	37	19	19	23	1.95
33295636--33295691	24	2.3	24	87	0	76	46	19	8	25	1.79
33295649--33295768	24	5.0	25	77	7	97	43	19	7	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33295778--33295854	26	2.9	26	84	1	64	27	19	18	35	1.95
33295788--33295892	27	3.9	26	83	5	129	23	21	19	35	1.96
33295788--33295892	53	2.0	54	83	5	133	23	21	19	35	1.96
33295902--33295985	27	3.1	27	87	3	116	23	20	16	39	1.92
33299855--33300097	50	4.8	50	89	0	360	23	30	20	25	1.98
33317699--33317726	14	2.0	14	100	0	56	35	14	0	50	1.43
33328045--33328089	21	2.1	21	84	8	56	13	13	28	44	1.81
33330841--33330959	27	4.4	27	79	0	130	15	20	17	47	1.83
33330841--33330959	54	2.2	54	86	3	159	15	20	17	47	1.83
33334352--33334388	20	1.9	19	89	10	58	27	18	0	54	1.44
33337930--33338046	28	4.2	28	87	1	164	31	21	24	22	1.98
33338390--33338508	27	4.4	27	82	9	127	15	23	19	41	1.90
33357580--33357938	105	3.5	104	94	1	605	20	20	28	30	1.97
33361344--33361460	42	2.7	42	76	6	110	33	23	17	26	1.96
33367261--33367298	19	2.0	19	100	0	76	26	10	15	47	1.78
33371797--33371840	12	3.7	11	88	11	61	40	0	18	40	1.50
33374855--33374974	43	2.8	43	76	9	122	37	26	13	22	1.91
33377129--33377160	16	2.0	16	93	0	55	25	15	0	59	1.36
33389204--33389240	16	2.2	18	90	9	60	64	5	5	24	1.36
33391114--33391156	21	2.0	21	81	0	50	25	11	9	53	1.67
33391374--33391409	19	1.9	18	88	5	54	41	2	0	55	1.14
33393184--33393209	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33393946--33393998	21	2.5	21	71	0	52	49	1	0	49	1.12
33393976--33394014	17	2.3	17	91	8	62	48	2	0	48	1.15
33398184--33398239	27	2.0	28	86	10	80	32	5	8	53	1.55
33404041--33404127	29	3.0	29	81	1	102	39	21	16	22	1.92
33405561--33405638	22	3.5	22	87	0	111	28	15	26	29	1.96
33413807--33413929	54	2.3	55	88	1	185	21	20	29	28	1.98
33423086--33423145	21	3.0	20	85	4	84	21	26	3	48	1.66
33426757--33426866	40	2.8	40	81	4	132	20	28	19	32	1.96
33435786--33435810	10	2.5	10	100	0	50	60	32	0	8	1.26
33436474--33436558	29	2.9	29	75	1	80	37	21	17	23	1.94
33438727--33438776	24	2.0	25	84	3	66	42	0	0	58	0.98
33438934--33438958	2	12.5	2	100	0	50	52	0	0	48	1.00
33442218--33442593	44	8.1	44	70	18	217	26	21	19	32	1.97
33442161--33442589	142	3.0	142	91	0	696	27	21	18	32	1.96
33443869--33443901	14	2.5	14	90	9	52	18	15	0	66	1.25
33453984--33454028	23	1.9	24	90	4	74	48	6	26	17	1.72
33456765--33456825	31	2.0	31	93	0	104	22	11	29	36	1.90
33461764--33461917	43	3.6	44	78	6	181	37	25	14	23	1.92
33461729--33461953	42	5.3	42	76	8	233	35	24	16	23	1.95
33461729--33461953	85	2.7	85	89	0	344	35	24	16	23	1.95
33462066--33462116	19	2.6	20	73	14	52	33	19	0	47	1.50
33467282--33467306	11	2.3	11	100	0	50	72	0	16	12	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33468486--33468702	40	5.4	40	86	1	267	22	30	16	30	1.95
33474374--33474424	26	2.0	26	84	7	68	17	23	31	27	1.97
33474403--33474765	43	8.6	43	78	10	304	24	16	23	34	1.95
33474400--33474685	85	3.4	85	87	4	371	24	16	24	34	1.95
33474403--33474765	128	2.8	126	86	5	450	24	16	23	34	1.95
33492230--33492313	19	4.4	18	82	8	80	38	8	17	35	1.80
33492232--33492306	19	3.8	19	91	6	123	37	9	16	37	1.80
33492233--33492295	21	3.1	21	95	4	112	38	9	14	38	1.78
33492245--33492329	21	4.0	22	79	14	81	37	7	16	38	1.76
33492295--33492339	23	2.0	23	86	4	65	33	4	15	46	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206