genome.fa.s2.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  161  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48774691--48775029	113	3.0	113	99	0	660	31	17	18	32	1.95
48777635--48777743	53	2.1	53	91	0	173	42	8	16	33	1.78
48779639--48779663	11	2.3	11	100	0	50	28	8	36	28	1.85
48783244--48783278	18	1.9	18	94	0	61	25	28	0	45	1.54
48784143--48786339	737	3.0	733	89	3	3338	36	14	18	31	1.90
48791327--48791558	45	5.2	45	84	6	249	34	25	15	24	1.95
48791327--48791562	90	2.6	90	84	4	280	34	25	15	25	1.94
48792321--48792361	18	2.3	18	83	4	57	19	41	0	39	1.52
48793295--48793332	16	2.4	16	82	8	51	57	5	0	36	1.21
48797227--48797266	19	2.1	19	85	0	53	37	0	5	57	1.21
48799776--48799818	21	2.0	22	86	4	61	27	2	11	58	1.46
48800098--48800144	2	23.5	2	100	0	94	48	0	0	51	1.00
48800420--48800459	13	3.2	12	89	7	53	52	7	0	40	1.30
48808655--48808842	50	3.6	50	76	12	157	26	29	18	25	1.98
48814050--48814149	49	2.0	49	94	0	173	21	18	12	49	1.79
48823277--48823393	62	1.9	59	86	5	162	42	4	3	49	1.39
48824849--48824873	10	2.5	10	100	0	50	32	16	24	28	1.96
48829959--48830016	30	1.9	30	85	0	80	31	8	32	27	1.87
48830435--48830726	30	9.7	30	84	0	269	20	15	21	42	1.88
48830426--48830717	120	2.4	120	94	1	514	19	15	21	43	1.88
48830435--48830720	90	3.2	90	82	3	297	19	15	21	42	1.89
48832805--48833060	29	8.7	30	82	3	247	39	21	17	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48832786--48833060	88	3.1	88	80	6	294	38	21	17	21	1.93
48832786--48833060	117	2.4	118	81	5	344	38	21	17	21	1.93
48833422--48833451	15	2.0	15	93	0	51	26	33	10	30	1.89
48840540--48840572	15	2.3	15	89	5	50	30	9	6	54	1.56
48842231--48842319	45	2.0	45	93	0	151	25	17	23	32	1.97
48846669--48846709	21	2.0	21	85	0	55	36	17	12	34	1.87
48847873--48847911	19	2.1	19	85	9	53	25	12	5	56	1.57
48850383--48850419	17	2.2	17	90	0	56	24	8	5	62	1.44
48850581--48850636	24	2.4	23	82	11	69	50	21	1	26	1.59
48853411--48853439	14	2.1	14	100	0	58	58	27	0	13	1.36
48857287--48857330	23	1.9	22	82	17	54	36	25	0	38	1.56
48861764--48861788	13	1.9	13	100	0	50	24	12	40	24	1.88
48873085--48873119	16	2.2	16	89	0	52	14	20	20	45	1.85
48876103--48876190	17	4.8	19	73	19	62	52	2	2	43	1.26
48876103--48876211	39	3.0	37	80	15	104	53	2	1	42	1.26
48876137--48876194	17	3.6	16	75	15	66	56	1	1	39	1.19
48876129--48876211	38	2.1	41	82	10	102	53	3	1	42	1.26
48876505--48876529	13	1.9	13	100	0	50	32	16	8	44	1.76
48878065--48878114	25	2.0	25	92	0	82	34	18	10	38	1.84
48879098--48879137	2	20.0	2	89	0	62	47	2	2	47	1.29
48893528--48893574	23	2.0	23	91	0	76	21	21	17	40	1.91
48895969--48896022	13	4.2	13	69	21	51	31	14	14	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48897800--48897829	6	5.0	6	91	0	51	70	13	0	16	1.18
48900178--48900229	18	2.9	18	91	0	86	32	28	3	34	1.76
48920373--48920438	31	2.1	31	100	0	132	25	9	25	39	1.85
48925617--48925678	27	2.2	30	82	8	76	24	4	0	70	1.06
48928603--48928627	6	4.2	6	100	0	50	16	36	48	0	1.46
48940851--48941048	51	3.9	51	82	5	251	30	26	17	26	1.97
48940861--48941045	101	1.8	101	88	3	282	30	25	17	25	1.97
48940856--48941079	101	2.2	101	79	7	249	29	28	15	26	1.96
48941155--48941186	10	3.2	10	100	0	64	9	28	0	62	1.26
48944344--48944377	16	2.1	16	100	0	68	29	11	26	32	1.92
48951010--48951049	19	2.1	19	95	0	71	7	45	22	25	1.78
48952443--48952553	55	2.0	55	96	1	206	26	18	7	47	1.74
48959916--48959974	29	2.0	29	86	0	82	27	10	28	33	1.89
48962384--48962425	20	2.1	20	86	0	57	45	2	7	45	1.44
48963837--48963920	41	2.0	41	100	0	168	32	14	14	39	1.86
48964705--48964734	12	2.5	12	94	0	51	30	13	20	36	1.90
48967647--48968017	104	3.6	103	93	1	600	19	20	29	30	1.97
48969316--48969357	20	2.1	20	86	0	57	47	0	7	45	1.30
48977066--48977092	2	13.5	2	100	0	54	48	0	0	51	1.00
48982003--48982068	30	2.2	31	86	2	89	24	24	19	31	1.98
48982079--48982238	60	2.6	60	85	2	203	40	20	20	19	1.92
48983288--48983360	30	2.5	30	86	2	103	35	5	13	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48987621--48987679	31	1.9	31	93	3	102	49	6	18	25	1.72
48988417--48988482	27	2.5	27	78	9	64	59	3	3	34	1.28
48991103--48991205	46	2.2	46	91	0	161	30	6	16	46	1.73
48991112--48991218	46	2.4	44	77	13	128	30	6	15	46	1.72
48993281--48993362	21	3.9	21	75	1	74	17	19	15	47	1.83
48994971--48995022	24	2.2	24	82	0	59	15	36	15	32	1.89
48996519--48996698	21	8.6	21	76	2	110	46	15	20	17	1.84
48996519--48996699	42	4.3	42	78	0	191	46	14	20	17	1.83
48996522--48996700	63	2.8	64	77	2	191	46	14	20	17	1.83
49004230--49004378	42	3.5	42	86	5	194	46	16	18	19	1.84
49004223--49004307	21	4.0	21	81	0	98	49	17	16	16	1.80
49004856--49004889	17	1.9	18	88	5	52	32	11	0	55	1.36
49011300--49011489	21	9.0	21	86	3	213	13	21	20	45	1.85
49015552--49015697	46	3.0	46	85	9	166	33	10	10	45	1.73
49016628--49016667	14	2.7	15	88	3	55	65	0	32	2	1.06
49016638--49016675	20	1.9	20	94	0	67	65	0	34	0	0.93
49017012--49017084	36	2.0	36	91	0	119	16	8	26	49	1.73
49017156--49017204	13	3.5	13	75	20	53	22	2	18	57	1.51
49017133--49017215	30	2.7	30	92	3	121	24	4	19	51	1.65
49018626--49018710	24	3.7	23	77	13	77	41	9	1	48	1.43
49020329--49020373	22	2.0	24	86	8	67	26	24	2	46	1.64
49021548--49021612	26	2.5	27	85	7	89	52	13	7	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49023371--49023415	15	3.0	15	86	0	63	37	35	8	17	1.81
49023858--49023921	6	10.7	6	86	0	92	65	14	1	18	1.34
49023858--49023933	18	4.2	18	86	0	98	63	13	3	19	1.45
49035510--49035546	11	3.4	11	92	0	65	54	29	8	8	1.59
49043126--49043652	50	10.7	50	80	6	533	20	31	19	28	1.97
49043126--49043656	97	5.4	96	86	2	632	20	31	19	28	1.97
49047094--49047218	41	3.0	41	84	2	162	35	26	21	16	1.95
49050935--49051127	50	3.8	50	87	0	269	25	22	30	20	1.98
49050939--49051127	100	1.9	101	89	1	299	25	23	30	21	1.99
49051649--49051707	31	1.9	31	100	0	118	32	5	25	37	1.78
49052749--49052890	40	3.6	40	77	6	137	30	23	19	26	1.98
49053838--49053911	5	14.8	5	100	0	148	59	0	0	40	0.97
49058539--49058567	2	14.5	2	100	0	58	48	0	0	51	1.00
49065646--49065893	124	2.1	118	85	7	329	39	13	10	37	1.78
49072603--49072671	34	2.0	34	97	0	129	39	2	18	39	1.66
49076612--49076754	43	3.2	43	75	13	112	66	2	1	29	1.14
49077110--49077142	16	2.0	16	94	5	57	36	0	0	63	0.95
49084123--49084164	2	21.5	2	95	4	77	50	0	0	50	1.00
49085839--49085890	27	1.9	27	85	14	72	25	0	1	73	0.94
49086634--49086671	2	19.5	2	89	5	60	50	2	0	47	1.15
49093698--49093931	43	5.4	43	93	0	369	32	26	16	24	1.96
49094049--49094163	31	3.7	31	87	1	160	45	18	7	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49094049--49094174	62	2.0	62	89	3	191	46	18	7	27	1.75
49096775--49096844	33	2.2	33	87	5	99	31	22	7	38	1.81
49096785--49096852	33	2.1	33	100	0	136	27	23	5	42	1.77
49104239--49104437	52	3.8	52	80	4	227	28	7	14	49	1.70
49106235--49106399	44	3.9	43	80	9	176	29	26	15	29	1.96
49109600--49109898	46	6.6	46	95	1	507	30	21	15	33	1.94
49114838--49114871	12	2.8	12	90	0	59	0	23	17	58	1.38
49118018--49118121	49	2.1	49	87	0	145	30	8	9	50	1.65
49119477--49119628	28	5.6	28	69	10	88	42	0	3	53	1.22
49119744--49119839	44	2.3	41	79	19	124	36	32	4	27	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206