genome.fa.s2.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  182  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55527586--55527689	50	2.1	50	94	0	181	32	19	21	26	1.97
55534768--55535381	44	14.0	44	85	3	824	33	21	12	32	1.91
55534751--55535379	88	7.1	88	92	1	940	33	21	12	32	1.91
55534751--55535377	132	4.8	132	88	2	936	33	21	12	32	1.91
55536630--55536678	21	2.3	21	89	6	73	14	16	0	69	1.19
55536630--55536678	7	7.0	7	82	17	66	14	16	0	69	1.19
55539582--55539625	19	2.3	20	84	7	56	38	9	22	29	1.85
55541432--55541469	14	2.9	13	85	11	51	63	2	0	34	1.09
55541803--55541858	3	18.3	3	78	7	51	66	0	1	32	1.03
55544622--55544651	15	2.0	15	93	0	51	30	0	6	63	1.20
55545361--55545419	22	2.6	24	74	17	63	42	3	0	54	1.17
55549134--55549192	28	2.1	28	84	9	77	42	0	10	47	1.37
55549134--55549208	28	2.7	28	80	13	68	38	1	9	50	1.43
55549944--55549984	20	2.0	20	100	0	82	31	19	9	39	1.84
55551120--55551311	40	4.8	40	90	5	271	60	0	2	36	1.10
55551120--55551261	11	13.9	11	71	19	94	59	0	2	38	1.10
55551573--55551664	46	2.0	46	97	0	175	35	21	4	38	1.74
55551850--55551892	2	21.5	2	100	0	86	48	0	0	51	1.00
55560311--55560481	44	3.9	45	71	15	151	28	15	22	33	1.94
55560309--55560508	43	4.6	43	72	13	140	29	14	23	33	1.94
55561783--55561898	57	2.0	57	98	0	223	37	5	19	37	1.75
55569574--55569686	29	3.9	29	82	4	111	23	24	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55569603--55569838	29	8.1	29	76	3	143	25	24	13	36	1.92
55569674--55569837	29	5.7	29	80	2	186	26	23	11	37	1.89
55569674--55569833	87	1.8	87	83	2	214	26	23	11	38	1.89
55569591--55569838	58	4.3	58	77	7	218	25	23	12	37	1.90
55578680--55578808	64	2.0	64	100	0	258	24	27	18	28	1.98
55584552--55584579	2	14.0	2	100	0	56	50	0	50	0	1.00
55592619--55592657	16	2.4	16	82	0	51	74	7	15	2	1.15
55598100--55598125	13	2.0	13	100	0	52	23	23	23	30	1.99
55598341--55598379	16	2.4	16	82	0	51	74	7	15	2	1.15
55608486--55608533	21	2.3	21	78	7	53	8	12	2	77	1.08
55612546--55612590	22	2.1	22	83	4	56	26	4	15	53	1.61
55614801--55614843	18	2.4	19	84	11	63	37	0	2	60	1.10
55615431--55615460	2	15.0	2	92	0	51	46	0	0	53	1.00
55616089--55616190	36	2.9	34	82	8	107	40	21	8	29	1.83
55616369--55616602	41	5.7	41	92	0	351	23	28	18	29	1.98
55617260--55617306	2	23.5	2	100	0	94	48	0	0	51	1.00
55621046--55621169	43	2.9	43	79	11	128	20	17	29	32	1.96
55623839--55623909	33	2.2	33	82	5	81	46	12	18	22	1.82
55625711--55625764	21	2.6	21	74	8	56	50	12	7	29	1.68
55628931--55628973	18	2.4	18	80	0	50	20	6	4	67	1.33
55635783--55635807	13	1.9	13	100	0	50	36	0	0	64	0.94
55642265--55642601	42	7.6	42	70	12	210	16	21	16	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55642262--55642407	21	7.0	21	67	3	89	15	21	17	46	1.84
55642337--55642550	71	3.0	71	100	0	428	18	20	16	44	1.86
55642481--55642604	21	5.9	21	75	3	106	16	20	16	45	1.85
55642572--55642615	21	2.2	20	88	8	63	15	22	13	47	1.81
55646690--55646729	14	2.9	14	84	0	53	42	17	7	32	1.77
55647290--55647356	31	2.2	30	78	7	71	44	10	7	37	1.67
55651676--55651713	19	2.1	19	85	5	51	39	0	7	52	1.31
55664750--55664919	63	2.7	63	85	0	223	33	32	8	25	1.86
55666692--55666733	22	2.0	21	90	4	66	71	11	2	14	1.24
55668171--55668216	20	2.2	20	85	11	58	39	2	4	54	1.32
55669710--55669778	31	2.2	31	86	0	102	36	13	8	42	1.75
55682656--55682724	22	3.1	22	83	4	77	44	18	20	15	1.86
55684657--55684700	22	2.0	23	81	4	54	56	25	11	6	1.58
55685132--55685183	16	2.9	17	80	13	52	46	3	1	48	1.31
55697808--55697993	93	2.0	94	90	1	293	54	13	18	12	1.70
55698946--55698995	25	2.0	25	92	0	82	54	10	22	14	1.69
55703610--55703653	21	2.0	22	86	4	63	59	2	0	38	1.10
55705582--55705677	48	2.0	48	91	0	156	34	15	23	26	1.95
55707527--55707689	73	2.2	73	78	3	175	33	23	25	17	1.96
55707562--55707717	25	6.3	25	74	11	126	32	22	26	18	1.97
55707657--55707717	26	2.3	26	85	0	86	37	21	22	18	1.94
55712873--55712934	21	2.9	22	69	9	56	37	27	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55714830--55714873	24	1.9	22	86	9	61	27	15	2	54	1.53
55715851--55715905	27	2.0	27	96	0	101	38	7	23	30	1.82
55716429--55716572	4	39.0	4	91	8	168	43	0	56	0	0.99
55716474--55716554	3	25.0	3	85	14	60	37	0	62	0	0.95
55716674--55716704	2	15.5	2	100	0	62	48	0	51	0	1.00
55720397--55720435	16	2.4	16	95	0	69	38	7	25	28	1.83
55722435--55722476	21	2.0	21	81	9	50	50	2	2	45	1.27
55722618--55722716	49	2.0	51	82	11	125	35	24	5	35	1.77
55722698--55722733	16	2.2	16	90	0	54	30	22	5	41	1.76
55723712--55723778	22	3.0	22	95	2	116	46	17	4	31	1.68
55730017--55730068	5	11.0	5	74	25	51	59	0	0	40	0.97
55730017--55730055	14	3.0	13	89	10	62	56	0	0	43	0.99
55730021--55730066	23	2.0	22	91	4	74	58	0	0	41	0.98
55731720--55731777	26	2.2	26	87	0	80	18	22	20	37	1.94
55737569--55737633	25	2.6	25	85	4	87	40	13	15	30	1.86
55743593--55743637	18	2.5	18	82	7	56	37	4	17	40	1.70
55744721--55744803	25	3.3	25	73	6	78	27	20	26	25	1.99
55744696--55744786	25	3.6	25	73	5	78	30	20	26	21	1.98
55746749--55746777	10	2.7	11	89	10	51	17	17	6	58	1.59
55749017--55749057	22	1.9	22	85	5	57	39	9	19	31	1.84
55749186--55749210	13	1.9	13	100	0	50	52	0	0	48	1.00
55749189--55749245	21	2.5	22	77	13	62	59	0	1	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55749189--55749245	11	5.0	11	79	16	55	59	0	1	38	1.08
55752576--55752609	5	6.8	5	87	12	52	0	17	0	82	0.67
55753486--55753511	3	8.7	3	100	0	52	0	30	0	69	0.89
55767554--55767582	15	1.9	15	100	0	58	65	13	20	0	1.26
55767556--55767591	15	2.3	15	90	4	54	72	11	16	0	1.12
55768670--55768702	14	2.5	14	90	9	52	42	3	21	33	1.68
55772630--55772755	62	2.0	62	93	0	216	19	20	10	50	1.76
55775064--55775208	36	4.0	36	96	0	254	37	13	20	28	1.90
55775128--55775193	21	3.5	20	63	25	52	34	12	19	33	1.89
55785810--55785857	20	2.5	20	86	6	64	41	0	6	52	1.27
55788222--55788481	125	2.1	127	83	2	328	31	21	14	31	1.94
55789407--55789439	14	2.4	14	90	5	50	45	0	9	45	1.35
55791047--55791072	13	2.0	13	100	0	52	23	0	30	46	1.53
55791416--55791476	30	2.0	31	96	3	115	44	3	6	45	1.46
55792787--55792812	10	2.6	10	100	0	52	92	0	7	0	0.39
55792936--55792964	12	2.3	13	94	5	51	6	34	0	58	1.25
55795954--55796043	36	2.5	36	77	10	87	45	4	0	50	1.22
55798186--55798252	23	3.0	21	78	10	71	23	7	20	47	1.75
55801334--55801442	39	3.1	38	83	16	153	34	2	0	62	1.10
55801338--55801410	30	2.4	31	97	2	139	34	2	0	63	1.09
55801338--55801429	30	3.1	29	90	6	116	34	2	0	63	1.07
55801387--55801440	28	1.9	28	81	7	65	35	3	0	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55802950--55802976	13	2.1	13	100	0	54	29	22	7	40	1.81
55809075--55809209	58	2.3	60	81	8	143	40	5	5	48	1.50
55810799--55811080	84	3.3	84	77	6	266	39	22	16	21	1.92
55810852--55811072	42	5.2	42	77	5	187	40	21	16	21	1.91
55811995--55812034	13	3.1	13	88	0	62	30	17	7	45	1.76
55812768--55812814	25	1.9	24	83	12	60	34	27	0	38	1.57
55815573--55815618	24	1.9	24	82	8	58	50	2	0	47	1.13
55815817--55815903	29	3.0	30	77	8	74	47	0	2	50	1.13
55825103--55825161	31	1.9	31	96	0	109	37	6	11	44	1.68
55829121--55829188	20	3.4	20	81	4	75	63	11	19	5	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206