Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  102  of  206  ( 24623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30005111--30005204
40
2.4
39
85
5
134
24
25
17
32
1.96
30005111--30005204
20
4.7
19
80
8
98
24
25
17
32
1.96
30005111--30005196
10
8.6
10
69
14
52
25
25
16
32
1.96
30005296--30005339
22
1.9
24
90
9
74
25
4
9
61
1.45
30006715--30006753
14
2.6
16
80
19
57
71
7
15
5
1.26
30007833--30007874
17
2.4
18
88
4
59
54
2
28
14
1.52
30009610--30009703
20
4.8
20
89
3
129
25
27
18
28
1.98
30009632--30009703
10
7.3
10
75
16
62
23
29
18
29
1.97
30009607--30009714
40
2.7
39
77
16
98
24
25
17
32
1.97
30022316--30022396
27
2.7
30
88
9
114
16
22
30
30
1.95
30029410--30029518
28
3.9
28
82
0
146
31
22
22
24
1.98
30029873--30030192
27
11.9
27
78
2
320
19
14
22
44
1.86
30029873--30030192
81
4.0
80
82
4
356
19
14
22
44
1.86
30030201--30030260
25
2.3
25
85
5
84
15
16
21
46
1.83
30035624--30035668
20
2.2
20
84
7
56
53
11
4
31
1.56
30037559--30037615
26
2.2
25
84
6
69
14
26
0
59
1.35
30038610--30038657
20
2.2
22
85
10
64
8
18
0
72
1.08
30046520--30046563
20
2.2
20
95
0
79
25
22
15
36
1.94
30053369--30053400
16
2.0
16
93
0
55
34
21
0
43
1.53
30063306--30063337
16
2.0
16
93
0
55
34
21
0
43
1.53
30068649--30068684
10
3.6
10
88
0
54
16
0
5
77
0.94
30068646--30068684
20
2.0
20
94
0
69
17
0
7
74
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30072128--30072205
39
2.0
39
97
0
147
50
7
8
33
1.63
30076578--30076624
20
2.3
20
85
0
67
36
14
23
25
1.93
30079748--30079798
20
2.5
20
87
6
68
74
1
19
3
1.07
30081544--30081615
33
2.1
34
87
2
101
37
8
12
41
1.73
30083698--30083723
11
2.4
11
100
0
52
7
11
0
80
0.89
30088797--30088872
39
1.9
39
94
0
134
53
7
7
30
1.58
30092405--30092433
10
3.0
10
95
5
51
72
6
0
20
1.07
30094547--30094586
20
2.0
20
85
9
55
32
15
27
25
1.95
30094558--30094605
20
2.4
20
82
6
53
33
12
31
22
1.91
30098241--30098266
9
2.9
9
100
0
52
19
0
11
69
1.18
30099347--30099377
9
3.4
9
90
0
53
25
12
22
38
1.90
30099431--30099476
9
5.1
9
94
0
83
45
13
10
30
1.77
30113438--30113470
17
1.9
17
100
0
66
45
12
6
36
1.66
30138120--30138176
30
1.9
30
88
0
87
28
10
33
28
1.90
30139551--30139585
16
2.3
15
90
5
52
20
5
0
74
1.02
30139568--30139601
11
3.0
12
91
8
54
26
5
0
67
1.13
30149004--30149048
18
2.4
18
88
7
63
4
17
2
75
1.07
30149005--30149048
19
2.4
17
82
14
52
4
18
2
75
1.09
30148998--30149059
18
3.4
17
75
16
52
3
19
3
74
1.10
30184260--30184297
19
2.0
20
84
5
51
68
5
5
21
1.29
30185141--30185177
18
2.0
19
89
5
58
75
2
16
5
1.10
30186937--30187008
33
2.1
34
87
2
101
40
6
13
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30189086--30189135
18
2.5
20
87
9
68
6
18
2
74
1.12
30195323--30195355
18
1.9
17
88
11
50
39
24
9
27
1.85
30196725--30196782
28
2.1
27
84
9
73
46
10
10
32
1.72
30211189--30211329
71
2.0
71
97
0
264
28
14
12
43
1.83
30212582--30212621
19
2.1
19
95
0
71
20
20
22
37
1.94
30213581--30213610
14
2.1
15
93
6
53
36
30
6
26
1.82
30222692--30222749
22
2.6
22
84
7
73
43
17
3
36
1.66
30222721--30222773
19
3.0
17
78
10
61
35
18
9
35
1.84
30222705--30222762
19
2.8
20
84
10
64
39
17
6
36
1.76
30223156--30224089
44
21.6
44
71
11
443
27
23
20
28
1.99
30223065--30223404
174
1.9
176
83
8
444
26
22
21
29
1.99
30223162--30223789
133
4.8
129
71
14
310
27
23
20
28
1.99
30223156--30224089
217
4.3
214
83
7
884
27
23
20
28
1.99
30223384--30223794
173
2.4
173
92
3
673
28
23
20
27
1.99
30223384--30223879
173
2.9
172
87
5
612
28
23
20
27
1.99
30223509--30224089
216
2.7
214
87
4
796
27
23
20
27
1.99
30224081--30224466
132
2.9
131
91
0
592
25
25
18
30
1.98
30231221--30231259
19
2.0
21
85
10
55
69
5
10
15
1.34
30231468--30231541
19
3.8
19
87
7
103
37
14
9
37
1.79
30231479--30231541
21
3.1
21
90
9
112
38
14
9
38
1.78
30241749--30241786
12
2.9
13
84
7
51
60
7
10
21
1.54
30245167--30245220
27
2.0
28
82
10
67
31
9
11
48
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30255485--30255559
33
2.2
34
88
2
107
41
12
8
38
1.72
30258838--30258938
52
1.9
52
93
0
175
32
21
17
27
1.96
30262409--30262450
22
2.0
21
90
4
66
30
4
33
30
1.78
30263606--30263664
30
2.0
30
83
6
75
28
15
25
30
1.96
30276343--30276381
11
3.1
14
75
24
50
71
7
5
15
1.26
30276353--30276381
11
2.6
11
100
0
58
72
6
6
13
1.26
30277536--30277575
12
3.3
12
82
0
53
60
2
22
15
1.47
30284957--30284998
10
4.3
10
78
6
50
28
11
23
35
1.91
30285557--30285609
13
4.0
14
83
11
76
20
11
0
67
1.21
30285647--30285694
13
3.6
13
86
5
69
12
4
8
75
1.18
30285647--30285694
14
3.5
14
85
5
71
12
4
8
75
1.18
30290573--30290615
16
2.7
16
100
0
86
25
11
0
62
1.29
30290654--30290688
12
2.9
12
91
0
61
17
2
8
71
1.23
30291679--30291725
23
2.1
23
84
7
62
51
12
4
31
1.59
30301903--30301965
21
3.0
21
88
2
90
30
3
33
33
1.74
30307669--30307708
16
2.4
17
95
4
73
10
10
2
77
1.08
30307683--30307735
27
2.0
27
85
7
72
11
5
5
77
1.11
30307716--30307748
13
2.5
13
95
0
57
21
9
0
69
1.15
30308047--30308103
21
2.7
21
86
2
78
33
3
31
31
1.75
30309242--30309300
30
2.0
30
83
6
75
28
15
25
30
1.96
30314159--30314209
20
2.6
20
90
3
77
27
19
27
25
1.99
30329138--30329165
10
2.8
10
100
0
56
75
0
10
14
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30331494--30331535
22
2.0
21
90
4
66
30
4
33
30
1.78
30336868--30336931
18
3.4
18
75
12
74
6
15
3
75
1.14
30352170--30352223
29
1.9
29
85
7
76
11
12
5
70
1.32
30355141--30355181
20
2.0
21
85
9
57
46
12
7
34
1.69
30370759--30370837
37
2.1
37
100
0
158
27
12
18
40
1.87
30373215--30373251
15
2.5
15
100
0
74
5
13
10
70
1.32
30374928--30374968
19
2.2
18
86
4
55
31
21
7
39
1.81
30376766--30376826
28
2.2
28
91
5
99
42
4
0
52
1.23
30377061--30377157
11
9.4
11
70
18
57
37
4
0
58
1.17
30377051--30377129
41
1.9
41
92
0
131
35
3
0
60
1.15
30377045--30377157
41
2.8
40
81
10
124
34
3
0
61
1.13
30377072--30377159
30
2.9
30
85
6
108
35
3
0
61
1.13
30377504--30377538
18
1.9
18
88
0
52
42
5
0
51
1.25
30377529--30377558
15
2.0
15
100
0
60
46
13
0
40
1.43
30377566--30377637
23
3.2
23
65
31
64
43
0
15
41
1.46
30377564--30377652
45
2.0
45
100
0
178
43
0
15
40
1.47
30378340--30378404
28
2.4
28
89
2
105
49
0
9
41
1.35
30378705--30378802
19
5.4
17
71
20
56
17
5
2
75
1.08
30378817--30378889
23
3.2
22
73
17
69
42
0
5
52
1.24
30378861--30378931
33
2.1
34
84
5
101
39
0
2
57
1.13
30378885--30378926
21
2.0
20
86
4
57
35
0
4
59
1.19
30379002--30379074
10
6.8
10
72
21
51
35
0
2
61
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30379011--30379069
22
2.7
23
75
19
72
33
0
3
62
1.12
30379283--30379346
19
3.0
21
70
22
53
54
0
6
39
1.26
30379345--30379403
17
3.5
17
76
14
52
57
0
3
38
1.15
30379643--30379675
9
3.7
9
84
15
50
78
3
0
18
0.87
30379694--30379745
19
2.7
19
85
11
70
76
0
9
13
1.01
30379710--30379755
12
3.8
12
82
2
56
78
0
10
10
0.97
30380659--30380683
7
3.6
7
100
0
50
60
0
12
28
1.32
30388510--30388549
20
2.0
19
85
9
53
40
0
0
60
0.97
30389426--30389491
13
5.1
13
78
7
71
37
22
6
33
1.79
30391008--30391103
25
3.8
25
76
0
84
33
19
26
20
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206