genome.fa.s2.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  164  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49681300--49681336	16	2.3	16	95	0	65	29	27	0	43	1.55
49684678--49684757	42	1.9	42	86	0	115	22	12	32	32	1.91
49684754--49684794	23	1.9	22	85	14	59	26	14	29	29	1.95
49687038--49687084	22	2.0	23	88	8	69	38	0	6	55	1.26
49693424--49693466	18	2.4	18	92	0	68	25	25	6	41	1.80
49697004--49697527	125	4.2	125	89	2	737	28	16	16	38	1.90
49697593--49697722	34	3.9	32	81	10	145	45	13	1	39	1.53
49698267--49698364	28	3.5	28	97	2	180	38	13	0	47	1.42
49698606--49698644	19	2.0	21	85	10	55	25	0	7	66	1.18
49698690--49698733	3	14.3	3	90	4	70	31	0	4	63	1.14
49698732--49698796	3	21.7	3	100	0	130	0	0	32	67	0.91
49699601--49699645	18	2.5	18	77	0	54	28	8	46	15	1.76
49705361--49705423	28	2.1	30	81	18	71	0	30	0	69	0.88
49705385--49705505	18	6.4	18	72	20	86	0	30	0	69	0.89
49705367--49705511	44	3.4	42	76	19	140	0	32	0	67	0.91
49705415--49705525	4	26.5	4	71	23	70	0	32	0	67	0.91
49705373--49705506	67	2.0	67	80	11	150	0	31	0	68	0.90
49705411--49705509	35	2.9	34	82	11	125	0	31	0	68	0.90
49705560--49705633	27	2.7	27	93	2	121	17	28	27	27	1.98
49705705--49705775	28	2.5	29	90	6	110	45	0	16	38	1.48
49705881--49705919	9	4.2	9	86	3	51	28	0	0	71	0.86
49706964--49706998	19	1.9	19	88	11	56	17	11	5	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49708015--49708042	6	4.7	6	100	0	56	14	17	0	67	1.22
49709737--49710067	114	2.9	114	83	8	392	24	21	25	28	1.99
49710385--49710467	35	2.3	35	77	2	85	26	3	26	43	1.71
49713380--49713584	52	4.1	52	72	20	177	46	13	4	35	1.65
49713453--49713509	21	2.8	20	76	7	60	42	10	7	40	1.66
49713514--49713550	15	2.7	14	84	15	51	56	13	0	29	1.37
49713427--49713604	96	1.9	96	91	1	295	46	14	3	36	1.61
49713514--49713551	7	5.6	7	82	17	53	57	13	0	28	1.36
49713514--49713602	22	4.1	21	78	13	85	48	15	1	34	1.53
49713570--49713594	12	2.1	12	100	0	50	52	16	0	32	1.44
49713597--49714072	92	5.2	92	98	1	911	39	6	5	48	1.52
49714069--49714400	9	37.9	9	69	13	133	46	18	3	31	1.65
49714135--49714185	24	2.2	23	85	3	66	50	17	3	27	1.63
49714188--49714304	37	3.2	37	100	0	234	51	16	2	29	1.58
49714309--49714340	16	2.0	16	100	0	64	50	18	6	25	1.70
49714295--49714401	25	4.2	25	73	4	106	43	20	2	32	1.66
49719930--49719996	21	3.2	21	86	0	89	29	19	47	2	1.64
49720217--49720250	14	2.4	14	100	0	68	11	8	23	55	1.63
49720810--49720841	7	4.6	7	100	0	64	46	40	0	12	1.42
49720819--49720875	28	2.0	28	83	6	71	36	31	10	21	1.87
49721113--49721169	21	2.7	21	81	5	53	52	1	1	43	1.21
49722556--49722615	31	2.0	30	83	9	77	45	8	10	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49730763--49730800	13	2.7	14	84	12	51	63	2	10	23	1.39
49739002--49739046	3	15.0	3	81	9	56	64	2	2	31	1.18
49738999--49739044	24	1.9	24	90	0	74	65	2	2	30	1.16
49744048--49744202	75	2.1	75	100	0	310	35	16	23	25	1.95
49745920--49745997	27	3.0	27	79	7	72	32	8	24	34	1.86
49753744--49753882	48	2.8	48	81	4	152	23	29	19	27	1.98
49753861--49754001	49	2.8	51	77	12	148	19	23	21	36	1.95
49755455--49755494	14	2.9	14	84	0	53	32	7	17	42	1.77
49755478--49755517	20	2.0	20	90	0	62	27	10	12	50	1.72
49755463--49755529	34	1.9	35	90	3	109	31	8	13	46	1.74
49755457--49755533	14	5.0	15	71	20	52	32	9	15	42	1.78
49755901--49755942	21	2.0	21	85	0	57	35	21	9	33	1.86
49759240--49759290	26	2.0	25	88	11	77	50	1	0	47	1.12
49760604--49760648	16	2.8	16	96	0	81	26	33	0	40	1.57
49764094--49764154	32	1.9	32	93	0	104	34	3	27	34	1.73
49772154--49772250	32	3.3	31	66	19	89	44	18	3	34	1.66
49774994--49775035	6	6.8	6	97	2	75	83	0	16	0	0.65
49776039--49776086	15	3.4	15	72	16	57	25	27	35	12	1.92
49776224--49776275	3	18.3	3	84	11	74	63	0	36	0	0.95
49776212--49776280	14	4.6	16	87	10	60	63	0	36	0	0.94
49776224--49776279	14	4.1	14	95	2	96	64	0	35	0	0.94
49776227--49776271	11	4.1	11	83	16	58	62	0	37	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49776422--49776639	19	11.2	19	72	19	139	33	0	12	54	1.38
49776575--49776626	8	7.1	8	75	20	51	38	0	9	51	1.35
49776566--49776639	27	2.7	27	91	0	121	36	0	10	52	1.36
49776831--49776910	36	2.2	37	93	4	135	56	2	2	38	1.26
49778610--49778644	18	1.9	18	88	0	52	28	31	31	8	1.87
49778965--49779033	28	2.5	28	95	2	122	36	0	10	53	1.35
49782668--49783331	216	3.0	216	84	7	784	40	13	19	26	1.88
49786091--49786168	29	2.5	31	82	12	81	55	10	11	23	1.66
49786439--49786481	17	2.5	17	92	0	77	18	30	30	20	1.97
49787077--49787239	82	2.0	82	93	0	281	42	16	16	23	1.88
49791699--49791771	22	3.5	21	80	12	89	39	19	27	13	1.89
49791699--49791771	20	3.5	20	81	5	83	39	19	27	13	1.89
49796734--49796763	13	2.3	13	94	0	51	70	10	0	20	1.16
49808703--49808745	22	2.0	21	81	4	50	11	18	9	60	1.57
49824524--49824582	25	2.4	25	94	0	100	23	20	22	33	1.97
49830786--49830815	16	1.9	16	93	6	53	30	0	20	50	1.49
49833529--49834111	294	2.0	294	90	0	925	30	21	15	32	1.94
49839031--49839071	21	2.0	21	90	0	64	7	12	29	51	1.66
49840413--49840447	4	8.8	4	100	0	70	77	0	0	22	0.78
49841720--49841770	23	2.2	23	92	0	84	41	25	9	23	1.85
49845685--49845738	25	2.2	25	86	0	72	11	20	24	44	1.83
49852233--49852454	61	3.6	61	80	3	248	26	25	13	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49854460--49854694	129	1.8	129	93	0	407	34	22	14	28	1.94
49867737--49867851	43	2.7	43	77	10	126	29	29	17	23	1.97
49870123--49870306	87	2.1	86	85	2	260	28	32	17	21	1.96
49870123--49870302	43	4.2	43	86	1	252	28	32	17	21	1.96
49876377--49876459	14	5.8	14	76	12	62	34	37	1	26	1.65
49876390--49876459	14	4.9	14	77	10	70	32	40	1	25	1.65
49876441--49876486	14	3.1	16	79	17	55	34	36	0	28	1.58
49876377--49876459	29	2.9	28	74	12	87	34	37	1	26	1.65
49876443--49876488	15	3.2	15	82	14	53	39	34	0	26	1.57
49876744--49876783	7	5.7	7	84	0	53	37	37	0	25	1.56
49876281--49876857	297	2.0	286	84	8	754	41	27	2	28	1.70
49877002--49877143	73	1.9	73	91	2	232	26	23	21	28	1.99
49877010--49877161	73	2.1	73	82	4	191	28	24	23	23	1.99
49877099--49877187	44	2.0	44	97	0	169	21	21	28	29	1.98
49879023--49879066	20	2.3	20	84	7	65	27	9	2	61	1.38
49879128--49879206	29	2.7	30	78	4	88	39	2	1	56	1.21
49879323--49879519	92	2.2	91	81	9	226	35	8	17	38	1.80
49893499--49893534	12	3.3	11	92	7	56	77	0	13	8	0.98
49893499--49893528	12	2.5	12	100	0	60	80	0	13	6	0.91
49895095--49895364	135	2.0	134	91	0	441	45	11	17	25	1.82
49906397--49906435	15	2.6	15	95	0	69	28	28	10	33	1.90
49907662--49907815	52	2.6	64	74	23	206	33	13	14	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49912739--49912779	19	2.2	19	86	4	57	63	7	4	24	1.40
49921517--49921695	50	3.6	49	78	3	155	22	25	23	28	1.99
49931563--49931676	54	2.1	53	83	1	147	26	24	13	35	1.92
49938510--49938546	7	5.1	7	87	6	56	56	0	0	43	0.99
49938508--49938546	14	2.7	15	84	8	62	56	0	0	43	0.99
49938644--49938673	15	1.9	16	93	6	53	56	0	0	43	0.99
49962964--49963054	45	2.0	45	91	0	146	17	28	19	34	1.95
49974827--49974876	19	2.8	18	87	6	66	30	14	8	48	1.72
49974859--49974890	15	2.2	15	94	5	57	37	3	6	53	1.42
49975055--49975099	21	2.1	22	87	4	65	46	0	6	46	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206