genome.fa.s2.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  121  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36113004--36113070	13	5.2	13	75	18	59	34	0	1	64	1.03
36118120--36118161	7	6.0	7	81	18	52	69	0	16	14	1.20
36118120--36118161	21	2.0	21	86	9	59	69	0	16	14	1.20
36119468--36120228	132	5.8	132	92	0	1200	29	19	24	26	1.98
36120210--36120844	100	6.3	100	88	1	887	31	20	23	25	1.98
36120270--36120941	150	4.5	150	78	3	706	31	20	23	25	1.98
36120770--36121099	100	3.3	100	89	1	493	28	20	24	25	1.99
36120220--36121094	200	4.4	200	84	2	776	30	20	23	25	1.99
36120266--36121094	150	5.5	150	76	4	627	30	20	23	25	1.99
36122581--36122649	3	22.3	3	75	16	61	34	0	1	63	1.03
36122581--36122649	21	3.2	22	79	8	79	34	0	1	63	1.03
36122581--36122649	13	5.3	13	75	17	63	34	0	1	63	1.03
36122581--36122649	10	7.4	9	75	15	61	34	0	1	63	1.03
36123876--36124440	126	4.5	125	85	6	757	30	23	16	30	1.96
36131898--36131932	18	2.0	17	88	5	52	54	0	0	45	0.99
36131913--36132103	66	3.2	59	66	21	144	48	5	3	42	1.41
36131974--36132159	59	3.1	58	70	19	166	51	3	2	43	1.32
36131878--36132165	120	2.4	120	90	3	454	49	4	2	43	1.35
36131913--36132113	61	3.3	61	67	18	150	49	5	2	42	1.41
36138917--36139037	23	5.3	23	95	2	208	32	25	21	20	1.98
36138917--36139037	45	2.6	45	93	2	206	32	25	21	20	1.98
36139124--36139152	8	3.6	8	100	0	58	34	27	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36151817--36151846	15	2.0	15	93	0	51	43	6	3	46	1.46
36151961--36152027	34	1.9	35	90	3	109	32	5	13	47	1.67
36153200--36153244	12	3.8	12	79	2	56	40	0	0	60	0.97
36153966--36154609	321	2.0	321	93	0	1092	27	19	22	30	1.98
36157043--36157211	45	3.6	45	75	13	171	39	0	13	46	1.47
36157098--36157180	25	3.3	25	93	0	139	42	0	15	42	1.47
36157054--36157224	95	1.8	94	85	7	242	40	1	13	45	1.51
36160347--36160724	125	3.0	125	92	0	614	32	23	14	29	1.94
36161322--36161381	30	2.0	31	83	9	79	58	8	0	33	1.28
36161459--36161484	2	13.0	2	100	0	52	50	0	0	50	1.00
36161596--36161632	2	18.0	2	94	5	65	48	0	2	48	1.15
36161596--36161637	8	5.0	9	94	2	54	45	0	4	50	1.23
36177555--36177626	37	1.9	37	97	0	135	27	11	22	38	1.88
36181602--36181666	25	2.6	26	85	4	73	38	3	0	58	1.14
36181699--36181749	25	2.1	24	82	10	59	45	1	1	50	1.24
36181859--36181897	19	2.0	20	90	5	62	41	7	5	46	1.55
36182824--36182876	2	26.5	2	96	0	97	50	0	0	49	1.00
36185813--36185859	20	2.5	20	82	6	53	59	0	4	36	1.17
36186244--36186345	43	2.4	43	86	0	150	44	11	7	36	1.70
36190398--36190522	46	2.7	46	82	0	160	29	12	24	32	1.93
36194093--36194279	50	3.8	50	79	6	182	20	28	23	27	1.99
36196435--36196469	13	2.7	13	100	0	70	45	22	0	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36200819--36201050	113	2.0	115	97	2	441	34	7	9	48	1.64
36206681--36206770	38	2.4	38	92	1	146	30	20	12	37	1.89
36209551--36209607	30	1.9	30	85	0	78	45	5	19	29	1.72
36209942--36209994	26	2.0	26	92	0	88	20	24	32	22	1.98
36209971--36210190	42	5.4	42	73	14	181	21	15	26	35	1.94
36209968--36210195	85	2.8	80	84	7	282	22	16	26	34	1.95
36229681--36229756	25	3.0	25	74	0	80	27	27	23	21	1.99
36229724--36229781	25	2.3	25	85	5	73	31	27	20	20	1.98
36233893--36233935	22	2.0	22	86	9	61	25	4	23	46	1.71
36248013--36248044	2	16.0	2	100	0	64	50	0	0	50	1.00
36250261--36250384	62	2.0	63	87	3	180	34	13	20	30	1.92
36258673--36258819	25	5.9	25	74	10	122	32	22	21	23	1.98
36258672--36258819	50	3.0	50	85	0	206	32	22	22	22	1.98
36267921--36267986	20	3.3	20	71	0	60	36	18	27	18	1.94
36267929--36267993	20	3.2	20	70	8	60	35	15	32	16	1.91
36267851--36267994	40	3.6	40	83	0	171	35	16	29	18	1.93
36276744--36276811	24	2.8	24	84	4	82	38	16	22	23	1.93
36281331--36281381	25	2.0	25	84	0	66	37	23	23	15	1.93
36281508--36281839	27	12.4	27	81	7	338	18	17	19	44	1.87
36281499--36281839	81	4.2	81	83	3	377	18	17	19	44	1.87
36293931--36294014	25	3.4	25	83	9	109	35	19	23	21	1.96
36294853--36294990	69	2.0	69	100	0	276	39	13	1	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36300356--36300413	28	2.1	28	90	0	89	29	22	22	25	1.99
36300521--36300580	26	2.3	26	85	0	75	40	23	21	15	1.91
36300544--36300619	26	2.9	27	86	3	93	38	19	22	19	1.94
36300773--36300992	27	8.2	26	82	7	208	17	16	19	46	1.84
36300773--36300992	54	4.1	54	83	5	257	17	16	19	46	1.84
36300773--36300992	81	2.7	81	85	4	284	17	16	19	46	1.84
36317473--36317514	21	2.0	21	85	0	57	33	0	23	42	1.55
36332201--36332377	40	4.6	40	81	8	231	33	17	31	17	1.93
36332278--36332377	20	5.0	20	66	13	71	33	20	32	15	1.93
36332201--36332377	74	2.3	76	87	5	241	33	17	31	17	1.93
36341311--36341363	27	2.0	26	92	3	88	13	22	33	30	1.92
36341233--36341498	103	2.6	103	90	3	408	19	19	30	30	1.97
36361734--36361783	16	3.3	15	76	13	50	46	4	0	50	1.20
36370026--36370057	15	2.1	15	94	0	55	31	53	0	15	1.43
36371845--36371994	45	3.4	43	79	8	133	22	16	24	36	1.94
36378962--36379159	45	4.4	44	76	6	157	23	14	26	34	1.94
36385515--36385574	20	2.9	21	73	7	59	41	20	26	11	1.86
36389594--36389746	50	3.0	50	90	4	236	46	15	20	17	1.84
36400244--36400836	297	2.0	297	97	0	1132	36	17	13	32	1.88
36402880--36402932	22	2.4	22	84	9	63	69	7	11	11	1.35
36409390--36409415	7	3.7	7	100	0	52	26	0	26	46	1.53
36410262--36410313	24	2.2	24	82	0	59	46	21	7	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36410275--36410341	24	2.8	24	83	0	89	44	20	8	25	1.80
36410342--36410559	27	8.1	26	72	13	140	41	19	16	22	1.90
36410342--36410559	54	4.0	54	80	4	244	41	19	16	22	1.90
36410363--36410559	81	2.4	81	85	6	258	42	19	15	22	1.89
36419555--36419649	49	2.0	48	87	8	140	53	11	6	28	1.61
36422883--36422928	15	2.9	16	78	15	51	2	19	0	78	0.86
36426077--36426171	49	2.0	47	89	8	147	55	11	4	28	1.54
36432616--36432716	3	34.0	3	83	2	114	32	7	0	58	1.34
36442194--36442310	50	2.3	50	85	0	144	27	23	29	20	1.99
36442584--36442622	20	2.0	20	89	0	60	58	0	25	15	1.37
36448779--36448831	11	4.7	11	86	9	72	75	7	1	15	1.11
36448779--36448832	12	4.8	12	84	9	69	75	7	1	14	1.09
36448868--36448905	13	2.8	14	88	8	60	68	2	13	15	1.32
36451641--36451785	68	2.1	68	100	0	290	30	12	12	44	1.79
36451641--36451748	37	3.1	37	62	24	97	30	12	12	44	1.79
36451659--36451762	31	3.2	31	66	24	86	30	12	11	45	1.78
36451676--36451779	31	3.2	31	63	24	77	27	11	14	46	1.79
36452081--36452127	22	2.1	22	100	0	94	29	0	17	53	1.44
36455360--36455472	46	2.4	47	92	2	201	45	22	14	18	1.85
36469084--36469306	50	4.4	50	71	15	151	25	15	28	30	1.96
36469124--36469309	50	3.7	50	80	5	196	24	16	27	31	1.96
36469124--36469309	101	1.8	101	87	2	275	24	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36469127--36469344	101	2.2	101	82	3	260	27	15	26	31	1.96
36478892--36478919	5	5.6	5	100	0	56	82	0	0	17	0.68
36483185--36483218	13	2.6	13	100	0	68	29	0	8	61	1.26
36484180--36484246	21	3.3	21	65	23	61	37	8	5	47	1.59
36484361--36484466	50	2.1	50	82	3	124	27	23	28	20	1.99
36484425--36484544	49	2.4	49	77	9	129	30	19	27	23	1.98
36484756--36484794	20	2.0	20	90	10	62	56	5	23	15	1.59
36492263--36492301	5	7.8	5	88	0	60	76	2	0	20	0.90
36498603--36498639	19	1.9	19	94	0	65	62	13	0	24	1.31
36500915--36501220	27	11.4	27	85	2	364	44	23	15	17	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206