genome.fa.s2.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  167  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50820812--50820849	14	2.7	14	95	0	67	28	21	5	44	1.73
50826475--50826501	14	1.9	14	100	0	54	59	0	14	25	1.36
50836313--50836353	12	3.4	12	86	10	57	21	7	56	14	1.63
50839896--50839924	7	4.1	7	100	0	58	27	0	13	58	1.36
50842021--50842080	25	2.4	26	83	8	79	51	0	1	46	1.10
50842040--50842087	25	2.0	25	84	8	64	60	0	2	37	1.09
50842245--50842292	19	2.5	19	82	3	51	33	0	0	66	0.92
50845671--50845752	34	2.4	32	76	11	83	45	3	13	37	1.61
50847138--50847197	31	1.9	31	93	6	104	50	23	3	23	1.64
50847515--50847647	70	1.9	70	84	4	182	31	12	13	42	1.82
50848990--50849034	18	2.5	19	82	10	58	35	26	4	33	1.77
50851477--50851526	25	2.0	25	100	0	100	20	20	8	52	1.71
50865548--50865594	10	4.7	10	89	7	69	74	6	2	17	1.12
50866734--50866791	18	3.2	18	82	0	71	65	3	17	13	1.40
50866786--50866877	17	5.2	17	67	7	58	65	2	23	8	1.32
50868588--50868635	20	2.4	20	92	0	78	29	25	12	33	1.92
50872448--50872479	16	2.0	16	93	0	55	59	0	3	37	1.13
50898806--50898878	22	3.6	22	68	21	77	16	21	30	31	1.95
50898785--50898932	38	3.9	38	90	0	224	16	20	28	34	1.94
50898866--50898984	16	6.7	16	72	20	94	16	21	30	31	1.95
50898844--50898915	22	3.6	21	70	22	64	16	19	29	34	1.94
50898866--50898984	54	2.2	54	90	0	193	16	21	30	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50898829--50899015	92	2.0	92	94	0	329	17	19	29	33	1.95
50898921--50899079	38	4.2	38	87	0	228	16	18	30	35	1.93
50898790--50899062	130	2.1	130	90	1	431	15	20	30	34	1.94
50899802--50899832	12	2.6	12	94	0	53	25	25	41	6	1.79
50900000--50900027	13	2.2	13	100	0	56	32	17	21	28	1.96
50905769--50905916	43	3.5	43	79	8	158	29	25	14	30	1.95
50907306--50907357	26	2.0	27	84	3	70	28	13	13	44	1.82
50913590--50913621	16	1.9	17	93	6	57	37	0	0	62	0.95
50913590--50913622	17	1.9	17	93	0	57	39	0	0	60	0.97
50922468--50922566	50	2.0	48	84	3	126	21	21	16	41	1.90
50937382--50937422	21	2.0	20	85	4	55	7	12	12	68	1.39
50938092--50938167	39	1.9	38	82	12	91	35	5	3	55	1.41
50942730--50942788	14	4.4	14	71	18	54	76	5	5	13	1.13
50942704--50942806	39	2.5	40	74	13	104	75	4	6	12	1.16
50943674--50943706	7	4.7	7	88	11	50	72	0	15	12	1.12
50943679--50943705	13	2.1	13	100	0	54	70	0	14	14	1.17
50944743--50944795	25	2.1	25	96	0	97	41	18	7	32	1.79
50948383--50948422	20	2.0	20	90	0	62	37	22	27	12	1.90
50949103--50949132	15	2.0	15	100	0	60	26	20	13	40	1.89
50949870--50949958	44	2.0	44	100	0	178	30	15	15	38	1.89
50955693--50955789	44	2.2	44	79	0	104	42	13	14	29	1.84
50970722--50970774	25	2.1	25	85	0	70	20	16	32	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50982637--50982692	25	2.3	25	81	3	69	26	0	7	66	1.18
50982637--50982701	24	2.8	24	77	11	64	29	0	6	64	1.17
50982671--50982733	28	2.3	29	78	10	69	31	3	6	58	1.39
50983392--50983425	18	1.9	17	88	5	50	47	0	2	50	1.16
50993136--50993200	34	1.9	34	90	6	105	23	32	29	15	1.95
50994190--50994247	25	2.2	27	76	17	68	31	20	25	22	1.98
50994202--50994321	25	4.9	25	72	3	82	31	18	26	23	1.97
50997493--50997528	16	2.2	16	100	0	72	25	0	36	38	1.56
50997764--50997798	18	2.0	17	88	5	52	54	0	0	45	0.99
50997651--50997966	156	2.0	157	95	0	571	43	3	5	47	1.42
50997900--50997941	15	2.7	16	82	14	52	52	2	0	45	1.13
50997909--50997950	15	2.9	15	82	10	52	52	0	0	47	1.00
50997898--50998195	120	2.5	121	92	4	496	50	4	2	42	1.37
50998019--50998070	15	3.6	15	80	12	56	53	1	0	44	1.11
51000616--51000656	6	6.8	6	97	0	73	34	0	65	0	0.93
51001201--51001225	12	2.1	12	100	0	50	32	16	20	32	1.94
51003273--51003342	27	2.6	27	76	13	72	24	27	11	37	1.89
51006081--51006151	24	2.9	25	81	12	101	22	26	22	28	1.99
51006083--51006162	25	3.2	24	80	18	85	21	26	21	31	1.98
51013798--51013872	25	2.8	26	72	16	73	24	26	20	29	1.99
51017341--51017368	12	2.3	12	100	0	56	7	21	42	28	1.79
51019127--51019156	15	1.9	16	93	6	53	20	10	6	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51022029--51022077	21	2.3	21	96	0	89	38	20	22	18	1.93
51032537--51032575	8	4.8	8	85	14	53	25	10	2	61	1.41
51032529--51032570	18	2.3	19	88	12	70	28	11	4	54	1.57
51035034--51035079	22	2.1	21	84	4	56	50	2	10	36	1.50
51035378--51035424	24	2.0	23	91	8	76	65	0	4	29	1.11
51035975--51036016	16	2.6	16	75	14	50	80	0	4	14	0.86
51039702--51039792	47	1.9	47	90	0	146	43	9	14	31	1.78
51041731--51041818	31	3.0	29	80	13	108	43	5	2	48	1.39
51041827--51041865	14	2.6	15	92	8	62	46	0	5	48	1.24
51043690--51044212	260	2.0	260	97	0	983	42	23	8	24	1.82
51047233--51047290	25	2.4	25	77	8	66	22	22	24	31	1.99
51050409--51050461	23	2.3	23	96	0	97	32	28	9	30	1.88
51058705--51058761	27	2.1	27	87	6	80	33	1	0	64	1.04
51058849--51058925	28	2.7	28	77	15	77	38	2	2	55	1.27
51058897--51058937	21	2.0	20	85	4	55	31	0	7	60	1.24
51061563--51061739	93	1.9	93	85	2	248	26	15	20	37	1.93
51070719--51070831	51	2.2	51	90	0	172	28	20	15	36	1.92
51075307--51075342	15	2.5	15	90	4	56	61	5	0	33	1.19
51078901--51078951	16	3.2	16	88	0	66	45	9	19	25	1.81
51083581--51083623	23	1.9	22	86	13	61	37	0	23	39	1.55
51084506--51084609	25	4.2	25	86	6	104	24	26	19	29	1.98
51085774--51085813	21	1.9	21	94	0	71	25	5	22	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51092021--51092153	49	2.7	49	77	10	153	26	16	22	34	1.95
51103124--51103189	27	2.5	28	85	5	75	27	33	16	22	1.96
51105377--51105426	21	2.3	21	83	12	66	36	6	2	56	1.36
51108570--51108640	30	2.3	30	80	9	72	39	4	5	50	1.45
51113366--51113456	38	2.4	38	86	0	119	32	24	24	18	1.97
51115262--51115324	30	2.1	30	96	0	117	23	3	15	57	1.53
51115446--51115476	11	2.8	11	90	0	53	67	0	0	32	0.91
51118820--51119256	95	4.6	94	80	3	360	39	18	15	26	1.90
51119661--51119718	9	6.4	9	89	0	89	24	8	24	43	1.82
51119661--51119718	18	3.2	18	95	0	98	24	8	24	43	1.82
51121127--51121235	40	2.7	40	86	9	150	35	16	29	18	1.93
51121151--51121212	20	3.1	20	68	9	63	37	19	30	12	1.89
51121139--51121235	40	2.4	41	89	8	155	32	17	29	19	1.95
51123427--51123488	32	1.9	33	86	3	90	35	0	4	59	1.19
51126349--51126390	9	4.7	9	87	0	66	42	23	9	23	1.83
51126349--51126390	18	2.3	18	100	0	84	42	23	9	23	1.83
51126428--51126462	6	5.8	6	93	0	61	14	2	17	65	1.38
51126503--51126546	18	2.4	18	88	0	61	13	2	43	40	1.57
51131183--51131295	25	4.5	25	75	12	99	23	23	23	28	2.00
51131183--51131295	50	2.3	50	84	3	138	23	23	23	28	2.00
51134124--51134175	27	2.0	26	84	3	68	38	19	0	42	1.51
51134060--51134296	90	2.6	92	86	2	298	41	14	0	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51135379--51135425	23	2.1	22	84	4	58	27	6	2	63	1.30
51141091--51141127	9	4.1	9	86	13	58	45	10	10	32	1.74
51142209--51142237	14	2.1	14	100	0	58	34	20	24	20	1.97
51142372--51142495	57	2.2	57	85	10	164	37	4	4	54	1.38
51143922--51143990	28	2.4	28	75	15	70	55	2	5	36	1.39
51143939--51143974	18	2.1	16	90	10	54	61	0	5	33	1.19
51144954--51144990	17	2.2	17	100	0	74	5	16	8	70	1.30
51145285--51145332	17	3.0	15	75	24	53	14	0	4	81	0.84
51145534--51145663	50	2.6	50	72	2	127	25	18	23	33	1.97
51145912--51145999	46	1.9	46	95	0	158	29	19	18	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206