genome.fa.s2.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  149  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45314559--45314621	25	2.5	25	84	0	72	25	17	22	34	1.95
45314679--45314785	25	4.3	25	76	4	108	21	14	28	35	1.93
45314499--45314734	130	1.8	130	90	0	382	24	18	26	30	1.97
45314679--45314791	50	2.3	50	82	3	129	22	14	26	37	1.92
45317007--45317045	19	2.1	19	95	0	69	51	15	5	28	1.64
45322622--45322861	50	4.7	50	80	6	207	28	20	27	23	1.99
45325633--45325696	26	2.5	26	94	0	110	31	3	0	65	1.08
45330823--45330858	19	1.9	19	88	5	56	36	2	5	55	1.38
45335105--45336303	600	2.0	602	95	0	2152	32	9	19	38	1.83
45339738--45339789	22	2.3	23	86	3	70	61	0	0	38	0.96
45341940--45342010	6	12.4	5	80	19	61	56	0	0	43	0.99
45341935--45342010	12	6.5	11	85	11	98	56	0	0	43	0.99
45341935--45342010	24	3.2	24	96	1	136	56	0	0	43	0.99
45343720--45344004	144	2.0	144	98	0	552	34	9	20	35	1.86
45349414--45349654	100	2.4	99	81	3	277	22	27	21	27	1.99
45349414--45349655	50	4.9	50	81	4	249	22	27	21	28	1.99
45353800--45353864	28	2.3	28	89	0	94	32	16	30	20	1.95
45362906--45362949	23	1.9	23	90	9	72	31	47	0	20	1.50
45364904--45365080	39	4.5	39	85	0	237	29	3	21	44	1.70
45365824--45365864	20	2.0	20	86	9	57	26	17	19	36	1.94
45366525--45366554	6	5.0	6	91	0	51	16	20	0	63	1.31
45366525--45366561	12	3.1	12	88	0	56	16	18	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45368632--45368666	18	1.9	18	94	0	61	60	0	22	17	1.37
45369786--45369906	57	2.1	59	83	9	151	52	4	17	25	1.65
45372206--45372267	14	4.8	13	77	15	58	40	4	0	54	1.22
45372217--45372269	25	2.2	24	82	3	61	43	3	0	52	1.19
45375276--45375340	30	2.2	30	83	10	80	38	0	21	40	1.54
45376818--45376842	12	2.1	12	100	0	50	44	32	8	16	1.76
45377959--45378004	22	2.1	22	84	8	58	47	10	17	23	1.79
45380045--45380089	19	2.3	20	92	3	74	20	13	15	51	1.76
45381378--45381470	32	2.9	32	96	0	168	51	19	3	25	1.62
45381411--45381497	27	3.0	27	83	11	77	51	18	3	26	1.62
45381376--45381515	59	2.3	62	80	8	162	52	19	2	25	1.60
45381696--45381721	9	2.9	9	100	0	52	0	34	0	65	0.93
45396872--45397141	40	6.8	40	83	2	303	20	28	16	34	1.94
45396936--45397037	20	5.1	20	69	4	80	22	29	15	32	1.95
45396896--45397113	120	1.8	119	90	1	355	20	29	16	33	1.94
45401522--45401737	107	2.0	107	87	3	310	24	14	18	42	1.88
45412095--45412146	23	2.3	23	89	0	77	32	28	17	21	1.96
45416755--45416798	20	2.2	20	84	8	54	25	29	29	15	1.96
45417635--45417679	23	1.9	24	90	4	74	73	11	0	15	1.10
45422787--45423110	152	2.1	154	84	7	430	41	4	11	42	1.62
45423232--45423264	17	1.9	17	100	0	66	30	9	42	18	1.81
45436673--45437018	125	2.8	125	84	6	423	21	17	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45436681--45437055	42	9.0	43	82	5	389	21	18	22	37	1.94
45437487--45437589	29	3.5	29	78	2	107	39	21	1	36	1.65
45437928--45437983	20	2.9	19	82	10	60	60	8	30	0	1.27
45438059--45438130	4	18.5	4	78	13	71	79	0	20	0	0.74
45438072--45438130	9	6.6	9	76	18	52	79	0	20	0	0.73
45438057--45438123	22	3.0	23	82	8	84	77	0	22	0	0.77
45438056--45438130	28	2.7	27	82	13	100	78	0	21	0	0.75
45438060--45438121	20	3.0	20	88	11	81	77	0	22	0	0.77
45438056--45438130	35	2.2	34	88	7	107	78	0	21	0	0.75
45438930--45438976	17	2.7	18	77	12	53	29	14	10	44	1.79
45439181--45439219	18	2.2	19	86	13	64	20	10	12	56	1.65
45439184--45439219	17	2.1	18	94	5	65	22	11	11	55	1.66
45439224--45439336	18	6.4	18	70	10	56	36	13	6	44	1.69
45439443--45439486	17	2.5	18	77	7	54	34	11	4	50	1.59
45439465--45439525	19	3.0	20	75	13	63	40	14	8	36	1.76
45439473--45439525	19	2.7	20	77	11	65	39	15	9	35	1.79
45439515--45439578	17	3.8	17	78	14	69	28	10	12	48	1.75
45439391--45439553	74	2.2	74	85	6	233	33	12	11	42	1.79
45439518--45439590	34	2.2	34	85	2	94	28	12	10	47	1.75
45454860--45454943	18	4.8	17	72	15	57	71	3	4	20	1.19
45454891--45454933	21	2.0	21	82	8	52	72	4	4	18	1.20
45454872--45454942	27	2.6	26	82	6	79	71	2	5	19	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45455005--45455043	15	2.5	15	88	12	53	76	0	2	20	0.90
45455983--45456061	39	2.0	39	97	0	149	32	18	17	30	1.95
45456085--45456674	44	12.9	45	71	9	268	28	21	16	33	1.95
45456330--45456473	51	3.0	51	68	15	133	28	19	17	34	1.94
45456265--45456674	95	4.4	96	78	8	388	27	20	17	34	1.95
45463448--45463486	15	2.5	15	88	12	53	74	2	2	20	1.06
45463660--45463765	51	2.1	51	100	0	212	65	11	11	12	1.49
45471606--45471635	2	15.0	2	92	0	51	53	0	0	46	1.00
45473113--45473142	16	1.9	16	93	6	53	50	20	0	30	1.49
45481661--45481696	2	18.0	2	100	0	72	50	0	0	50	1.00
45488492--45488525	2	17.0	2	93	0	59	50	2	0	47	1.16
45490143--45490192	20	2.6	19	73	14	50	54	2	4	40	1.31
45491548--45491586	20	2.0	20	84	0	51	17	7	2	71	1.21
45492405--45492456	24	2.2	22	75	18	52	40	0	1	57	1.10
45492412--45492469	24	2.3	25	80	17	66	31	3	0	65	1.09
45492415--45492464	24	2.0	25	85	11	68	34	2	0	64	1.05
45494294--45494350	28	2.1	28	83	3	71	36	3	3	56	1.34
45495041--45495087	24	2.0	24	91	0	76	23	17	31	27	1.96
45505714--45505813	49	2.0	49	88	0	146	49	13	7	31	1.68
45509320--45509452	69	1.9	69	83	3	169	33	15	24	26	1.95
45509366--45509586	94	2.3	94	87	3	309	33	16	23	26	1.96
45512365--45512395	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45512449--45512485	9	4.1	9	92	0	65	45	13	10	29	1.77
45514189--45514247	21	2.8	21	73	21	59	28	10	1	59	1.40
45524629--45524672	20	2.2	20	84	8	54	52	0	6	40	1.28
45525640--45525671	2	16.0	2	100	0	64	50	0	0	50	1.00
45526287--45526329	21	2.0	21	90	0	68	46	18	4	30	1.69
45529165--45529197	16	2.1	16	94	0	57	51	0	0	48	1.00
45529222--45529246	13	1.9	13	100	0	50	40	0	0	60	0.97
45530201--45530282	37	2.2	37	77	10	87	46	3	19	30	1.67
45533201--45533313	29	3.9	29	88	0	154	39	15	18	26	1.90
45556041--45556079	3	12.7	3	89	10	53	71	0	0	28	0.86
45559521--45559564	22	2.0	22	86	0	61	22	36	25	15	1.94
45559528--45559576	22	2.2	22	92	0	80	20	34	30	14	1.92
45559940--45559980	20	2.0	20	90	9	66	80	2	17	0	0.82
45559996--45560020	13	1.9	13	100	0	50	80	0	8	12	0.92
45568447--45568484	18	2.1	18	90	0	58	50	2	0	47	1.15
45577155--45577247	11	9.4	11	73	21	73	36	1	0	62	1.03
45577148--45577238	28	3.2	28	74	13	98	36	1	0	62	1.02
45577187--45577227	17	2.4	17	91	0	73	36	0	0	63	0.95
45577188--45577265	17	3.7	22	72	20	60	41	0	0	58	0.98
45577208--45577247	11	3.6	11	100	0	80	40	0	0	60	0.97
45579340--45579383	19	2.2	20	84	4	54	61	4	2	31	1.28
45579351--45579407	21	2.8	21	74	12	55	59	1	3	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45579362--45579445	32	2.7	30	77	12	98	55	1	5	36	1.32
45585708--45585752	22	2.2	20	84	8	54	35	20	4	40	1.72
45587058--45587100	22	2.0	22	85	0	59	37	25	18	18	1.94
45587493--45587547	28	1.9	29	85	3	76	60	0	3	36	1.15
45587480--45587615	10	14.2	9	69	14	60	65	0	4	29	1.17
45587557--45587622	28	2.4	28	82	5	80	63	1	3	31	1.19
45587647--45587684	19	2.0	20	84	5	51	60	2	10	26	1.43
45587991--45588057	4	16.8	4	87	0	53	28	10	22	38	1.87
45588169--45588223	27	2.0	27	86	6	76	41	3	0	54	1.18
45588280--45588343	20	3.3	19	73	8	58	23	6	3	67	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206