genome.fa.s2.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  118  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35117068--35117333	43	6.2	43	87	1	345	31	22	22	22	1.98
35117552--35117657	45	2.4	44	79	1	113	26	18	26	28	1.98
35120162--35120192	14	2.2	14	100	0	62	41	12	0	45	1.42
35124719--35124761	15	2.9	15	80	10	52	67	2	23	6	1.27
35126433--35126469	16	2.3	16	86	13	58	40	0	0	59	0.97
35126455--35126490	18	1.9	18	88	5	54	58	0	0	41	0.98
35126464--35126538	16	4.4	17	71	25	52	53	0	0	46	1.00
35126454--35126540	34	2.4	36	78	19	94	52	0	0	47	1.00
35127207--35127247	15	2.7	15	88	0	64	58	2	12	26	1.46
35127676--35127790	56	2.1	56	93	0	194	40	10	13	34	1.79
35138098--35138124	14	1.9	14	100	0	54	37	22	25	14	1.93
35138772--35138813	22	1.9	22	100	0	84	21	26	14	38	1.91
35144096--35144157	30	2.1	30	84	0	79	37	8	8	46	1.63
35148214--35148295	36	2.2	39	85	10	109	23	13	25	37	1.91
35150257--35150518	136	1.9	136	79	3	294	20	19	27	33	1.96
35155895--35155932	15	2.4	17	82	8	53	39	7	7	44	1.63
35158327--35158436	35	3.1	35	88	0	157	24	27	21	26	1.99
35170592--35170702	22	5.0	22	87	0	150	31	14	26	27	1.95
35176075--35176165	44	2.0	46	91	4	150	27	4	30	37	1.76
35176075--35176169	46	2.2	44	83	12	119	28	4	31	35	1.76
35176324--35176457	18	7.9	18	70	17	90	57	2	1	38	1.20
35176339--35176522	41	4.6	40	68	20	116	53	3	2	40	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35176394--35176434	13	3.2	12	80	12	55	58	0	0	41	0.98
35176337--35176540	59	3.4	61	71	16	196	54	2	1	40	1.27
35176514--35176553	13	3.2	12	80	13	53	57	0	0	42	0.98
35179259--35179294	15	2.4	14	86	13	54	69	2	8	19	1.27
35179807--35179833	10	2.7	10	100	0	54	44	18	7	29	1.77
35180011--35180083	36	2.0	36	100	0	146	36	16	8	38	1.79
35180786--35181042	89	2.8	90	84	8	301	38	18	8	33	1.82
35181141--35181287	10	15.4	9	73	19	104	65	2	1	30	1.12
35181154--35181201	19	2.5	20	86	6	71	60	6	2	31	1.33
35181529--35181638	9	11.6	9	71	13	78	38	1	0	60	1.08
35181537--35181648	19	5.9	19	76	14	88	35	1	0	61	1.13
35181529--35181638	39	2.9	37	82	7	132	38	1	0	60	1.08
35181529--35181590	29	2.1	29	82	5	72	37	3	0	59	1.13
35183306--35183336	15	2.0	16	93	6	55	51	6	16	25	1.68
35186657--35186717	27	2.3	27	80	2	79	29	19	22	27	1.98
35186823--35186909	28	3.1	28	75	6	95	17	14	32	35	1.90
35192327--35192362	18	2.0	18	88	0	54	22	27	0	50	1.50
35192577--35192863	51	5.7	50	76	5	290	28	26	15	28	1.96
35192575--35192863	101	2.9	102	89	2	431	29	26	15	29	1.96
35198102--35198153	23	2.3	23	75	0	59	15	15	32	36	1.89
35201468--35201519	23	2.3	23	82	0	59	13	15	28	42	1.85
35203172--35203216	15	3.0	15	93	0	72	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35214510--35214703	41	4.6	42	75	7	169	23	18	23	35	1.96
35217148--35217413	103	2.6	104	92	0	426	30	29	19	20	1.97
35217148--35217413	104	2.6	103	90	1	417	30	29	19	20	1.97
35217742--35217805	30	2.2	29	81	10	76	29	28	6	35	1.82
35217749--35217805	30	1.9	30	85	3	80	29	24	7	38	1.82
35224544--35224607	30	2.2	29	81	10	76	29	28	6	35	1.82
35224551--35224607	30	1.9	30	85	3	80	29	24	7	38	1.82
35226779--35226898	47	2.6	47	82	2	143	27	15	26	30	1.96
35228666--35228715	20	2.5	20	80	3	55	22	10	4	64	1.41
35232365--35232555	41	4.6	41	82	5	208	24	17	23	35	1.95
35242590--35242650	31	2.0	31	96	0	113	40	13	21	24	1.88
35242915--35242976	29	2.1	30	84	3	81	58	8	17	16	1.62
35252753--35252786	2	17.0	2	100	0	68	50	0	0	50	1.00
35254537--35254566	15	2.0	15	93	0	51	43	6	3	46	1.46
35255397--35255426	13	2.3	13	94	0	51	53	6	3	36	1.44
35256237--35256283	15	3.3	15	70	11	53	29	27	23	19	1.98
35256202--35256377	57	3.1	57	77	3	183	23	23	28	24	2.00
35256221--35256393	28	6.1	28	76	6	150	24	23	26	25	2.00
35256777--35256844	18	3.8	18	70	14	59	27	17	35	19	1.94
35257982--35258032	26	2.0	26	84	7	68	31	1	5	60	1.31
35258372--35258422	11	4.6	11	78	7	50	74	3	3	17	1.12
35263130--35263173	16	2.8	16	79	3	54	22	4	20	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35263236--35263272	16	2.3	16	90	0	56	24	13	18	43	1.86
35266475--35266507	17	1.9	18	88	11	52	42	9	0	48	1.35
35269097--35269146	23	2.2	23	96	0	91	24	40	10	26	1.86
35269593--35269634	14	3.2	13	80	9	50	42	4	0	52	1.22
35271428--35271517	39	2.3	39	88	3	137	36	15	16	31	1.90
35272032--35272060	15	2.0	15	93	6	51	37	0	6	55	1.27
35279471--35279650	27	6.7	27	85	3	211	34	17	20	27	1.95
35279471--35279650	81	2.2	80	85	4	238	34	17	20	27	1.95
35279471--35279695	81	2.8	81	80	8	212	34	17	20	27	1.95
35279720--35279798	24	3.3	23	84	5	95	24	7	18	49	1.73
35279861--35279960	27	3.8	26	84	5	103	16	25	25	34	1.95
35279913--35279966	26	2.1	26	96	0	99	14	22	27	35	1.93
35279923--35279978	26	2.2	26	90	0	85	12	21	32	33	1.91
35279966--35280042	32	2.4	32	86	2	102	19	20	22	37	1.94
35280270--35280328	28	2.1	28	93	0	100	20	22	23	33	1.97
35280584--35280616	15	2.1	16	88	5	50	24	0	15	60	1.35
35280687--35280735	24	2.0	24	100	0	98	30	24	8	36	1.85
35302205--35302296	31	3.0	31	95	0	166	53	8	20	17	1.70
35309484--35309540	28	2.0	28	89	3	87	22	10	7	59	1.54
35309487--35309549	29	2.2	28	82	2	72	22	9	11	57	1.62
35324371--35324408	20	1.9	20	89	10	60	68	7	7	15	1.37
35341670--35341699	13	2.3	13	94	0	51	20	30	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35343112--35343171	27	2.2	27	93	0	102	23	3	25	48	1.66
35345548--35345610	31	2.0	31	87	6	92	49	6	19	25	1.71
35348939--35348974	2	19.0	2	88	11	58	47	0	52	0	1.00
35348939--35348974	11	3.4	11	96	3	65	47	0	52	0	1.00
35355594--35355628	16	2.1	17	89	5	54	37	17	8	37	1.80
35361899--35362008	29	3.8	29	79	4	114	20	26	15	38	1.92
35361899--35362039	59	2.4	58	82	5	160	21	25	14	38	1.92
35361937--35362022	29	2.9	29	80	1	109	19	27	15	37	1.92
35372735--35372775	15	2.5	17	80	15	50	21	4	4	68	1.28
35372820--35372856	11	3.1	13	77	22	53	18	10	5	64	1.43
35373778--35373806	14	2.1	14	100	0	58	27	24	13	34	1.93
35379178--35379345	89	1.9	89	94	0	300	28	23	12	35	1.91
35382410--35382486	25	3.2	24	67	22	63	31	5	6	57	1.46
35382405--35382497	47	2.0	46	91	2	150	33	6	5	54	1.49
35386552--35386607	23	2.4	23	96	0	103	25	28	25	21	1.99
35386597--35386781	89	2.1	89	88	0	271	28	28	21	21	1.99
35386989--35387047	23	2.6	23	91	0	100	38	23	1	35	1.65
35389947--35390176	43	5.5	40	78	13	214	35	26	14	23	1.94
35389939--35390176	85	2.8	85	89	0	352	34	25	15	23	1.95
35389947--35390173	42	5.4	42	77	12	214	35	25	14	23	1.94
35392651--35392697	13	3.6	13	77	11	60	53	2	2	42	1.25
35393360--35393410	24	2.1	25	85	3	68	27	37	0	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35396677--35396710	17	1.9	18	88	5	52	73	11	2	11	1.20
35414804--35414850	23	2.0	23	100	0	94	27	4	8	59	1.45
35422483--35422560	40	2.0	40	100	0	156	25	16	19	38	1.92
35431973--35432069	25	4.0	24	74	11	90	35	20	21	22	1.96
35431957--35432068	50	2.3	49	87	1	161	33	21	21	23	1.97
35436527--35436559	17	1.9	17	93	0	57	18	15	12	54	1.71
35443844--35444023	91	2.0	91	98	0	351	30	7	22	40	1.81
35448984--35449136	27	5.7	27	84	4	177	41	21	15	20	1.89
35448984--35449138	54	2.9	54	86	2	206	41	21	15	21	1.90
35449345--35449447	26	4.0	26	80	0	107	17	20	20	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206