genome.fa.s2.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  172  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52379368--52379479	41	2.8	40	82	4	143	31	20	24	24	1.98
52379070--52379637	148	3.9	147	85	5	715	33	19	23	23	1.97
52379512--52379606	39	2.4	38	75	18	95	32	17	23	26	1.97
52379797--52379840	14	3.1	14	81	12	54	22	0	25	52	1.48
52379808--52379847	21	1.9	21	89	0	62	20	0	30	50	1.49
52380020--52380231	7	30.1	7	73	4	104	21	0	30	47	1.55
52380027--52380149	62	2.0	62	84	9	162	21	0	28	50	1.49
52380065--52380141	34	2.2	34	88	6	111	19	0	28	51	1.47
52382728--52382787	9	6.2	9	78	14	66	50	18	0	31	1.47
52382710--52382787	40	2.0	39	89	2	120	51	15	0	33	1.44
52382830--52383008	21	9.4	20	70	21	86	45	17	1	35	1.59
52382823--52382979	9	16.3	9	69	16	84	44	18	1	35	1.61
52382859--52383006	42	3.1	47	78	15	164	45	18	2	33	1.61
52382831--52383006	98	1.8	94	91	7	291	44	18	1	35	1.60
52386017--52386159	71	2.0	72	95	1	261	32	6	8	51	1.59
52387390--52387422	17	2.0	17	88	5	50	15	3	6	75	1.11
52395413--52395444	11	2.8	11	95	4	55	43	0	0	56	0.99
52397275--52397509	27	8.7	27	84	0	265	38	15	24	21	1.92
52397281--52397513	81	2.9	81	87	1	306	39	15	23	21	1.91
52399479--52399511	5	6.6	5	96	0	57	36	0	21	42	1.53
52399767--52399859	36	2.6	37	82	5	127	16	9	30	44	1.79
52400904--52400991	42	2.1	42	82	0	104	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52406002--52406036	18	2.0	18	88	5	54	62	0	22	14	1.31
52406056--52406155	50	2.0	50	96	0	182	36	15	29	20	1.92
52417536--52417571	19	1.9	18	88	5	54	63	22	8	5	1.43
52417686--52417719	17	2.0	17	94	0	59	32	17	23	26	1.97
52418014--52418060	21	2.2	21	88	3	67	48	6	25	19	1.72
52428538--52428618	40	2.0	40	97	0	153	22	23	24	29	1.99
52431637--52431787	39	3.7	39	78	10	151	41	7	5	44	1.58
52433785--52433814	15	2.0	15	93	0	51	20	23	33	23	1.97
52436053--52436132	39	2.1	39	97	0	151	38	20	11	30	1.87
52438547--52438622	23	3.3	23	96	0	143	31	26	21	21	1.98
52438709--52438737	8	3.6	8	100	0	58	34	27	13	24	1.93
52449574--52449619	7	6.6	7	97	0	83	56	10	0	32	1.34
52454007--52454039	16	2.1	16	88	11	50	39	3	0	57	1.14
52454026--52454106	19	4.7	18	70	19	57	40	4	1	53	1.31
52454002--52454127	49	2.4	52	83	9	168	37	7	0	54	1.33
52454293--52454402	52	2.1	52	84	0	139	27	17	12	42	1.85
52454618--52454684	34	1.9	35	87	3	100	32	8	13	44	1.75
52455214--52455258	19	2.4	19	96	3	83	46	8	15	28	1.76
52456504--52456597	9	10.4	9	89	0	134	41	22	9	26	1.84
52457146--52457197	11	4.7	11	76	9	61	59	5	0	34	1.21
52460185--52460234	15	3.4	14	78	8	55	72	18	0	10	1.12
52467985--52468175	51	3.8	51	76	8	201	30	27	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52470929--52471010	42	2.0	42	82	4	103	31	24	13	30	1.93
52470970--52471062	47	2.0	47	84	2	123	32	27	16	23	1.96
52478697--52478794	47	2.1	48	88	5	146	45	20	20	13	1.84
52480059--52480694	143	4.4	143	87	0	842	30	19	21	28	1.98
52480633--52480792	45	3.6	44	79	5	160	31	21	20	27	1.98
52487315--52487367	19	2.8	19	72	27	51	39	1	1	56	1.21
52488347--52488532	90	2.1	90	96	0	345	38	13	19	28	1.90
52491472--52491556	23	3.7	23	80	3	98	30	7	7	55	1.54
52491487--52491548	24	2.7	23	80	5	70	33	8	6	51	1.57
52491444--52491556	47	2.4	47	82	4	131	31	7	6	54	1.52
52491736--52491768	2	17.0	2	87	6	50	51	3	0	45	1.16
52495351--52495402	20	2.5	21	84	3	61	36	17	42	3	1.67
52495715--52495811	43	2.2	44	87	1	133	32	25	15	25	1.95
52499357--52499428	35	2.1	35	97	0	135	41	13	12	31	1.82
52502025--52502138	57	2.0	57	89	3	176	29	19	26	24	1.98
52502261--52502391	67	2.0	67	92	0	217	22	16	32	29	1.96
52510870--52510907	13	2.9	13	85	11	51	7	0	23	68	1.16
52527537--52527575	18	2.2	18	86	9	53	28	10	12	48	1.74
52528793--52529214	95	4.5	93	76	6	352	25	15	19	39	1.91
52528882--52529099	93	2.3	93	79	5	224	27	15	18	38	1.91
52530280--52530381	21	4.9	21	68	13	68	27	12	20	39	1.89
52530289--52530381	41	2.2	42	80	14	104	29	11	21	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52543326--52543631	137	2.2	138	88	0	461	45	6	7	40	1.58
52543606--52543752	75	2.0	75	83	5	190	30	14	10	44	1.78
52572108--52572161	22	2.5	22	78	0	63	40	24	12	22	1.89
52581939--52582309	105	3.6	104	92	1	593	19	19	30	30	1.97
52584062--52584091	15	1.9	16	93	6	53	56	0	0	43	0.99
52620919--52620984	27	2.5	25	76	9	69	25	25	15	33	1.95
52621031--52621093	27	2.3	27	91	5	101	31	22	3	42	1.69
52622672--52622702	11	2.8	11	95	0	53	41	0	6	51	1.27
52623622--52623657	2	18.0	2	100	0	72	50	0	0	50	1.00
52629275--52629317	21	2.0	21	100	0	86	13	23	18	44	1.86
52641832--52641918	25	3.5	24	76	7	77	31	20	24	24	1.98
52647103--52647432	111	3.0	111	96	0	608	33	18	7	40	1.78
52649264--52649500	43	5.6	41	77	9	199	27	27	17	27	1.98
52649264--52649483	85	2.6	84	82	3	260	26	27	17	27	1.98
52652020--52652063	21	2.1	21	100	0	88	59	9	9	22	1.56
52662247--52662335	45	2.0	45	100	0	178	26	22	19	31	1.97
52664095--52664170	23	3.3	23	90	0	125	32	25	18	23	1.97
52664257--52664285	8	3.6	8	100	0	58	34	27	13	24	1.93
52665856--52665887	14	2.1	16	88	11	50	25	3	12	59	1.48
52668679--52668713	18	1.9	18	88	0	52	45	20	17	17	1.85
52673889--52673932	21	2.1	21	91	4	72	63	6	13	15	1.49
52673919--52673943	11	2.3	11	100	0	50	60	0	16	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52693063--52693118	10	5.2	11	73	18	55	21	37	0	41	1.53
52693063--52693135	22	3.4	22	75	17	64	24	34	0	41	1.55
52693108--52693220	51	2.2	51	90	1	183	28	23	0	47	1.52
52694361--52694385	7	3.6	7	100	0	50	28	0	12	60	1.32
52695037--52695071	18	1.9	18	94	0	61	25	31	8	34	1.86
52698719--52698763	22	2.0	22	100	0	90	51	22	13	13	1.75
52699129--52699267	41	3.4	41	79	2	145	35	27	17	18	1.94
52699521--52699645	46	2.8	45	79	4	144	24	20	20	33	1.97
52709047--52709147	41	2.5	42	85	3	125	39	22	18	18	1.92
52709371--52709504	45	3.0	44	82	6	135	26	20	13	39	1.89
52709519--52709621	45	2.3	45	79	3	118	19	16	17	46	1.84
52714012--52714050	12	3.2	12	85	0	51	20	23	5	51	1.67
52714299--52714546	50	4.8	50	83	3	253	23	29	20	27	1.99
52714299--52714546	100	2.4	103	83	4	286	23	29	20	27	1.99
52718499--52718740	41	5.9	41	81	2	281	23	27	14	34	1.94
52718519--52718740	123	1.8	123	85	3	313	22	27	15	35	1.94
52725065--52725101	6	6.3	6	96	3	67	16	0	13	70	1.17
52726537--52726590	26	2.1	26	100	0	108	27	11	11	50	1.72
52726915--52726951	14	2.8	13	92	8	58	75	0	5	18	0.99
52732173--52732227	20	2.7	20	86	8	76	36	21	32	9	1.85
52736125--52736167	14	2.9	14	80	12	50	30	6	0	62	1.21
52744812--52744848	19	2.0	18	89	5	56	78	5	8	8	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52746149--52746312	88	1.9	88	83	5	215	26	26	23	24	2.00
52746384--52746633	44	5.7	44	88	0	365	22	25	20	31	1.98
52746386--52746630	132	1.9	132	92	0	418	22	24	21	31	1.98
52758719--52759059	102	3.3	102	88	0	502	21	19	26	31	1.97
52758935--52758985	27	1.9	26	96	4	93	15	23	31	29	1.95
52766335--52766677	102	3.4	102	90	1	508	21	18	26	33	1.97
52766478--52766632	33	4.6	33	70	21	115	19	19	27	34	1.96
52766548--52766601	27	2.0	28	92	3	92	18	24	29	27	1.98
52770580--52770604	11	2.3	11	100	0	50	44	0	8	48	1.32
52774152--52774177	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206