genome.fa.s2.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  126  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37879898--37879930	12	3.0	11	87	12	50	78	0	0	21	0.75
37883543--37883654	23	4.9	23	78	0	125	36	26	6	30	1.81
37883543--37883654	46	2.4	46	89	0	170	36	26	6	30	1.81
37885930--37885973	21	2.1	21	100	0	88	36	18	22	22	1.95
37887167--37887205	15	2.7	15	88	4	53	43	0	33	23	1.54
37899406--37899521	54	2.1	54	90	0	178	44	16	10	28	1.80
37903289--37903350	10	5.9	10	74	10	52	33	32	3	30	1.74
37903289--37903351	21	3.0	21	88	2	90	33	33	3	30	1.74
37904788--37904832	19	2.3	20	84	7	65	77	2	13	6	1.05
37904851--37904880	15	2.1	15	93	6	53	73	0	20	6	1.05
37909032--37909093	10	5.9	10	74	10	52	33	32	3	30	1.74
37909032--37909094	21	3.0	21	88	2	90	33	33	3	30	1.74
37917901--37918042	70	2.2	63	84	13	175	39	12	24	23	1.89
37917922--37918058	70	2.0	70	97	0	256	34	12	26	27	1.92
37926226--37926272	20	2.3	20	85	0	58	25	29	19	25	1.98
37928930--37928988	18	3.3	18	85	0	82	72	6	15	5	1.23
37928926--37929018	6	15.3	6	70	5	62	72	4	19	4	1.19
37929018--37929051	18	1.9	18	88	5	52	55	0	17	26	1.42
37928913--37929073	30	5.6	29	72	8	89	67	2	19	11	1.33
37938791--37938837	20	2.3	20	85	0	58	25	29	19	25	1.98
37941955--37942016	10	5.9	10	74	10	52	33	32	3	30	1.74
37941955--37942017	21	3.0	21	88	2	90	33	33	3	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37946013--37946085	29	2.5	29	90	0	119	30	9	12	47	1.73
37959341--37959403	21	3.0	21	88	2	90	30	3	33	33	1.74
37960523--37960581	30	2.0	30	83	6	75	28	15	25	30	1.96
37961535--37961636	52	1.9	53	88	2	152	33	18	11	36	1.87
37964195--37964298	23	4.5	23	79	2	111	31	5	26	35	1.80
37964188--37964293	46	2.3	46	90	0	167	30	5	27	36	1.80
37966118--37966227	39	2.8	38	78	4	121	45	11	8	34	1.71
37967576--37967624	18	2.6	19	78	18	57	22	2	2	73	1.04
37967575--37967624	22	2.3	22	83	10	66	22	2	2	74	1.03
37970327--37970370	20	2.2	20	84	11	56	31	4	11	52	1.57
37971605--37971644	20	2.0	20	85	5	53	82	2	12	2	0.87
37973846--37973958	6	17.3	6	67	24	52	73	4	16	5	1.18
37973848--37973923	19	3.8	18	76	16	55	76	3	13	6	1.12
37981211--37981272	10	5.9	10	74	10	52	33	32	3	30	1.74
37981211--37981273	21	3.0	21	88	2	90	33	33	3	30	1.74
37983301--37983383	10	7.9	10	74	10	67	32	32	3	31	1.75
37983301--37983384	21	4.0	21	92	1	132	32	33	3	30	1.75
37983301--37983420	42	2.7	43	81	10	136	37	32	3	26	1.73
37983724--37983763	16	2.4	16	95	4	71	77	2	10	10	1.08
37991874--37991935	10	5.9	10	74	10	52	33	32	3	30	1.74
37991874--37991936	21	3.0	21	88	2	90	33	33	3	30	1.74
37995084--37995142	20	3.0	20	82	0	64	37	13	27	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38000837--38000881	17	2.8	16	80	6	54	17	17	0	64	1.29
38003053--38003095	20	2.2	20	86	0	59	53	2	30	13	1.53
38005343--38005387	11	4.0	11	85	5	54	66	13	6	13	1.43
38005343--38005390	12	4.2	12	86	7	64	64	14	6	14	1.47
38005426--38005465	13	2.9	14	85	7	64	67	0	12	20	1.22
38006393--38006437	18	2.5	17	82	13	54	73	4	15	6	1.21
38006391--38006442	18	2.8	18	75	16	52	67	3	19	9	1.35
38024347--38024408	10	5.9	10	74	10	52	33	32	3	30	1.74
38024347--38024409	21	3.0	21	88	2	90	33	33	3	30	1.74
38029648--38029692	14	3.1	14	83	3	54	2	26	2	68	1.12
38040519--38040580	10	5.9	10	74	10	52	33	32	3	30	1.74
38040519--38040581	21	3.0	21	88	2	90	33	33	3	30	1.74
38041391--38041439	19	2.5	19	83	6	62	75	2	14	8	1.12
38043104--38043163	10	5.9	10	75	9	50	30	15	28	26	1.96
38043107--38043209	20	4.8	20	70	16	64	31	17	28	23	1.97
38043137--38043209	21	3.3	21	65	20	58	32	17	28	20	1.96
38043131--38043223	46	2.0	46	100	0	186	34	20	25	19	1.96
38043148--38043219	21	3.2	21	64	21	56	36	18	27	18	1.94
38045057--38045106	28	1.9	26	88	12	68	10	26	2	62	1.38
38045072--38045140	12	5.8	12	73	20	56	11	23	0	65	1.25
38045170--38045216	15	3.1	15	84	9	60	12	17	0	70	1.17
38050005--38050116	23	4.9	23	78	0	125	36	26	6	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38050005--38050116	46	2.4	46	89	0	170	36	26	6	30	1.81
38051743--38051786	20	2.2	20	83	0	52	25	29	18	27	1.98
38058450--38058511	27	2.3	27	97	0	115	41	16	4	37	1.69
38060137--38060174	20	1.9	19	94	5	67	23	28	15	31	1.96
38060644--38060785	70	2.2	63	83	13	166	39	11	24	23	1.89
38060669--38060801	70	1.9	70	96	0	248	34	9	26	29	1.88
38069318--38069348	12	2.6	12	100	0	62	80	0	6	12	0.89
38075238--38075284	21	2.4	19	82	13	51	76	2	12	8	1.09
38079829--38079940	23	4.9	23	76	0	116	36	25	6	31	1.81
38079829--38079940	46	2.4	46	86	0	161	36	25	6	31	1.81
38084992--38085061	31	2.3	31	82	9	81	32	12	28	25	1.93
38089786--38089820	18	1.9	18	88	0	52	57	0	20	22	1.41
38091626--38091669	20	2.2	20	83	0	52	25	29	18	27	1.98
38093992--38094053	10	5.9	10	74	10	52	33	32	3	30	1.74
38093992--38094054	21	3.0	21	88	2	90	33	33	3	30	1.74
38107898--38108009	23	4.9	23	76	0	116	36	25	6	31	1.81
38107898--38108009	46	2.4	46	86	0	161	36	25	6	31	1.81
38113724--38113865	70	2.2	63	83	13	166	40	12	24	22	1.89
38113745--38113881	70	2.0	70	95	0	247	35	12	26	26	1.92
38119668--38119792	64	1.9	64	79	10	139	28	11	12	47	1.76
38121734--38121767	13	2.5	14	90	9	61	61	0	5	32	1.20
38123341--38123401	10	6.1	10	74	12	54	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38123342--38123402	20	3.0	20	83	9	79	32	13	26	27	1.93
38123346--38123422	30	2.5	30	81	6	84	29	15	29	24	1.96
38127010--38127043	13	2.5	13	90	4	50	61	8	11	17	1.54
38134426--38134537	23	4.9	23	76	0	116	37	25	6	30	1.81
38134435--38134537	46	2.2	46	91	0	161	36	26	6	30	1.82
38160136--38160237	52	1.9	53	88	2	152	33	18	11	36	1.87
38161611--38161720	39	2.8	38	80	4	130	44	11	9	34	1.73
38166353--38166416	22	2.9	22	81	4	76	26	32	6	34	1.82
38171431--38171503	29	2.5	29	90	0	119	30	9	13	46	1.75
38174239--38174349	22	5.0	22	78	5	116	31	28	6	33	1.82
38174245--38174372	68	1.9	67	80	7	152	34	30	7	28	1.84
38176030--38176073	14	3.4	14	84	9	58	75	4	4	15	1.14
38178146--38178187	14	2.9	14	85	3	57	73	2	21	2	1.06
38183217--38183348	50	2.6	51	79	3	158	34	16	11	37	1.85
38192554--38192580	9	3.0	9	100	0	54	11	0	0	88	0.50
38220371--38220412	14	2.9	14	85	3	57	73	2	21	2	1.06
38227353--38227385	10	3.3	10	91	8	50	0	27	3	69	1.03
38227987--38228038	25	2.1	25	100	0	104	19	19	19	42	1.90
38228459--38228492	15	2.3	15	90	5	52	20	2	2	73	1.09
38230966--38231087	63	2.0	59	82	6	145	48	13	11	26	1.77
38234817--38234878	10	5.9	10	74	10	52	33	32	3	30	1.74
38234817--38234878	21	2.9	21	87	2	88	33	32	3	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38235191--38235243	16	3.4	16	85	10	67	73	0	9	16	1.08
38235178--38235242	13	4.7	13	83	12	76	70	1	10	16	1.23
38239945--38240056	23	4.9	23	78	0	125	36	26	6	30	1.81
38239945--38240056	46	2.4	46	89	0	170	36	26	6	30	1.81
38240334--38240370	19	2.0	19	94	5	67	70	10	5	13	1.32
38252818--38252862	19	2.3	20	84	7	65	77	2	13	6	1.05
38258408--38258519	23	4.9	23	78	0	125	36	26	6	30	1.81
38258408--38258519	46	2.4	46	89	0	170	36	26	6	30	1.81
38260283--38260324	14	2.9	14	85	3	57	2	21	2	73	1.06
38262397--38262428	14	2.4	13	90	10	55	15	6	6	71	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206