genome.fa.s2.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  193  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58450171--58450281	50	2.2	50	79	3	116	29	18	18	33	1.95
58450034--58450317	136	2.1	136	89	2	428	27	20	20	31	1.97
58450297--58450395	49	2.0	49	82	3	119	26	25	19	29	1.98
58450420--58450462	21	2.0	21	90	0	68	23	32	4	39	1.75
58450319--58450542	123	1.8	121	81	3	279	28	25	15	30	1.96
58451913--58453085	593	2.0	593	99	0	2328	27	22	17	32	1.96
58455361--58455412	26	2.0	26	100	0	104	26	26	19	26	1.99
58457725--58457755	12	2.6	12	94	0	53	9	29	9	51	1.66
58461824--58461855	16	2.0	16	93	0	55	28	12	28	31	1.93
58463424--58463473	26	1.9	26	84	8	66	46	2	12	40	1.52
58465547--58465586	15	2.7	15	84	0	53	17	0	7	75	1.03
58470058--58470138	43	1.9	42	85	12	112	77	3	7	11	1.09
58470248--58470319	5	13.6	5	72	23	51	76	1	2	19	0.99
58470914--58470939	12	2.2	12	100	0	52	30	0	0	69	0.89
58477826--58477897	35	2.1	35	97	0	135	44	18	4	33	1.69
58481800--58482040	25	10.4	24	74	17	172	18	25	17	38	1.93
58481800--58482045	47	5.3	46	78	14	213	18	25	17	38	1.92
58481978--58482039	22	2.8	22	85	0	79	16	25	19	38	1.92
58481985--58482040	22	2.5	23	85	8	80	14	25	17	42	1.87
58485669--58485702	16	2.1	16	88	5	50	47	0	5	47	1.26
58486795--58486862	21	3.3	21	68	15	61	32	8	20	38	1.84
58486775--58486862	40	2.2	41	85	2	115	31	7	19	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58487064--58487164	43	2.3	45	81	8	127	21	20	18	38	1.93
58489355--58489385	16	1.9	16	93	0	53	16	6	29	48	1.70
58493174--58493207	16	2.1	16	88	5	50	47	0	5	47	1.26
58493617--58493664	7	7.0	7	92	4	71	22	0	33	43	1.54
58493617--58493663	20	2.3	21	92	3	78	21	0	34	44	1.52
58494701--58494745	18	2.4	19	85	3	65	22	20	11	46	1.81
58496417--58496459	11	3.8	11	80	17	52	62	4	2	30	1.28
58496413--58496456	23	1.9	23	90	0	70	59	6	2	31	1.36
58499196--58499226	15	2.1	15	100	0	62	32	6	32	29	1.83
58502295--58502336	18	2.3	19	88	12	61	66	0	2	30	1.04
58508544--58509107	114	4.9	112	76	9	469	30	18	23	27	1.98
58509210--58509245	18	2.0	18	89	10	56	25	0	5	69	1.10
58510155--58510199	7	6.3	7	92	2	63	4	0	53	42	1.21
58510156--58510211	21	2.6	21	83	8	69	5	0	46	48	1.25
58518161--58518218	13	4.2	13	74	20	55	22	5	0	72	1.04
58518166--58518225	22	2.9	21	85	11	72	21	6	0	71	1.08
58518160--58518217	12	5.2	11	79	20	59	20	5	0	74	1.01
58518161--58518224	7	9.3	7	75	20	55	21	6	0	71	1.07
58521848--58521880	16	2.1	16	94	0	57	27	12	9	51	1.69
58521947--58522083	67	2.0	67	94	2	240	36	5	13	45	1.65
58522130--58522175	19	2.4	19	85	7	58	41	2	2	54	1.25
58522133--58522180	17	2.7	18	78	12	55	39	2	2	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58522198--58522271	34	2.1	37	82	7	91	39	6	4	50	1.48
58522259--58522429	72	2.4	72	96	1	308	40	14	3	41	1.62
58522380--58522423	13	3.4	12	84	12	52	43	11	2	43	1.53
58522671--58522995	16	19.8	16	61	24	63	45	19	2	32	1.63
58522764--58522994	9	26.4	9	70	14	162	45	20	2	31	1.63
58522806--58522856	25	2.0	25	88	0	75	52	19	0	27	1.46
58522805--58522972	62	2.7	62	76	13	152	46	21	1	30	1.59
58522928--58523007	25	3.2	25	73	7	54	43	20	3	32	1.69
58528523--58528572	21	2.4	21	86	0	73	36	18	44	2	1.61
58528931--58529096	42	3.9	42	93	0	278	22	19	22	34	1.96
58529619--58529707	37	2.4	37	84	3	108	39	20	19	21	1.93
58531946--58532044	28	3.6	27	81	9	119	31	12	28	28	1.92
58533063--58533355	24	12.5	24	68	15	184	24	12	19	43	1.86
58533063--58533397	47	7.1	47	90	2	352	24	13	19	42	1.87
58533063--58533356	94	3.1	93	87	0	399	24	12	19	43	1.86
58533201--58533339	25	5.8	25	73	17	134	26	10	19	43	1.84
58541609--58541647	18	2.2	18	85	0	51	69	2	0	28	1.02
58541619--58541659	17	2.4	17	87	0	55	58	0	0	41	0.98
58541600--58541640	10	4.3	10	75	12	50	73	2	0	24	0.96
58545319--58545384	13	5.5	13	72	26	65	39	0	12	48	1.40
58545311--58545386	23	3.3	23	87	1	118	40	0	11	47	1.40
58545533--58545585	22	2.2	24	74	9	56	18	11	5	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58548403--58548447	23	2.0	23	90	0	72	37	2	13	46	1.55
58554339--58554451	29	3.8	30	73	16	83	40	9	0	48	1.42
58555301--58555400	49	2.1	49	86	1	139	44	8	16	32	1.76
58556424--58556483	3	20.0	3	89	6	68	60	1	31	6	1.33
58557544--58557583	3	13.3	3	89	0	53	42	0	25	32	1.55
58557550--58557583	15	2.3	15	94	0	59	44	0	23	32	1.54
58567743--58567777	18	1.9	18	88	0	52	42	0	0	57	0.99
58567866--58567906	21	2.0	21	90	0	64	75	7	0	17	1.02
58575238--58575406	84	2.0	83	93	1	284	34	23	8	33	1.86
58577161--58577580	114	3.7	114	80	1	466	33	18	23	25	1.97
58577845--58577934	7	13.0	7	72	6	58	12	0	41	46	1.41
58577863--58577924	22	3.0	21	82	13	74	11	0	40	48	1.39
58577894--58577932	13	2.9	14	84	7	53	7	0	43	48	1.31
58578198--58578689	87	5.7	87	89	0	691	27	23	23	25	2.00
58578762--58578916	42	3.6	42	80	10	190	31	22	21	23	1.98
58578763--58578916	86	1.8	82	90	5	245	31	22	22	24	1.99
58578767--58578942	86	2.1	82	85	4	235	28	25	22	23	1.99
58581313--58581346	16	2.1	16	88	0	50	64	11	0	23	1.26
58582418--58582444	12	2.2	12	100	0	54	59	0	0	40	0.98
58583811--58583843	13	2.4	14	90	5	50	9	6	21	63	1.45
58584383--58584420	20	1.9	19	89	5	58	23	7	5	63	1.42
58584469--58584542	37	2.0	37	91	0	121	41	13	1	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58584593--58584659	16	4.7	15	68	21	54	41	14	4	38	1.67
58584523--58584678	41	3.8	41	85	3	206	42	16	3	37	1.65
58584627--58584712	25	3.5	24	76	6	73	44	13	1	40	1.52
58584627--58584786	50	3.2	50	75	9	146	43	15	3	38	1.63
58584627--58584770	75	1.9	76	84	1	191	43	15	2	38	1.58
58584648--58584786	25	5.5	25	75	10	131	43	15	2	38	1.62
58584718--58584786	26	2.7	25	77	6	77	42	17	4	36	1.69
58588513--58588580	21	3.2	21	85	0	91	32	19	44	4	1.70
58588897--58589057	42	3.8	42	88	3	234	33	21	22	22	1.97
58588897--58589053	84	1.9	84	91	0	260	34	21	21	22	1.97
58590468--58590499	10	2.8	12	81	18	50	75	0	0	25	0.81
58590500--58590533	6	5.7	6	100	0	68	50	0	0	50	1.00
58593162--58593213	21	2.5	21	79	14	63	34	0	5	59	1.21
58595948--58596181	50	4.8	48	80	7	233	26	20	31	22	1.98
58599882--58599923	14	2.8	15	82	10	59	0	21	0	78	0.75
58599878--58599922	12	3.5	13	88	11	67	0	22	0	77	0.76
58599877--58599923	13	3.7	13	79	20	55	0	23	0	76	0.78
58600765--58600798	2	17.0	2	100	0	68	0	0	50	50	1.00
58603782--58603808	14	1.9	14	100	0	54	66	14	0	18	1.25
58604658--58604691	16	2.1	17	89	10	54	82	5	5	5	0.95
58605034--58605109	22	3.2	22	70	22	64	15	3	40	39	1.66
58605791--58605866	38	2.0	38	100	0	152	15	15	26	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58606099--58606149	18	2.7	19	81	6	59	29	1	11	56	1.46
58609487--58609537	2	25.5	2	100	0	102	49	0	0	50	1.00
58609823--58609863	21	2.0	21	85	0	55	60	29	2	7	1.36
58612946--58612986	21	1.9	22	85	5	57	34	12	12	41	1.80
58614956--58614990	18	1.9	18	100	0	70	65	0	11	22	1.24
58627150--58627331	91	2.0	90	86	4	249	48	11	17	22	1.78
58644393--58644418	6	4.3	6	100	0	52	15	15	53	15	1.73
58646034--58646064	15	2.1	15	100	0	62	25	38	0	35	1.56
58646560--58646743	43	4.3	43	86	3	257	28	19	24	27	1.99
58646560--58646743	85	2.2	85	89	2	271	28	19	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206