genome.fa.s2.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  190  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57682748--57682782	18	1.9	18	94	0	61	20	0	25	54	1.45
57682896--57683588	127	5.5	125	88	3	948	30	17	22	29	1.97
57682900--57683588	253	2.7	250	86	4	951	30	17	22	29	1.97
57686566--57686604	18	2.2	17	86	13	53	33	0	20	46	1.51
57686709--57686737	8	3.6	8	100	0	58	24	13	27	34	1.93
57689448--57690428	21	45.0	21	67	17	197	26	1	25	46	1.61
57689448--57690428	43	22.5	43	73	12	587	26	1	25	46	1.61
57689588--57689694	52	2.1	52	87	3	153	24	0	26	49	1.50
57689602--57689671	30	2.3	30	80	9	88	22	0	24	52	1.47
57689520--57689758	116	2.1	115	84	4	313	26	0	25	46	1.59
57689488--57690002	180	2.9	179	86	3	671	27	1	24	46	1.62
57689712--57689938	116	2.0	115	91	0	373	27	1	23	47	1.61
57689795--57689853	30	1.9	30	82	3	73	25	3	18	52	1.61
57689769--57689874	52	2.1	51	87	1	149	25	1	21	50	1.58
57690009--57690125	59	2.0	58	84	1	153	22	2	29	46	1.65
57689987--57690387	80	5.0	77	73	16	257	25	0	26	46	1.59
57690165--57690278	51	2.2	52	83	12	146	24	0	24	50	1.49
57690099--57690387	73	4.0	73	78	8	243	25	0	25	48	1.54
57690239--57690415	66	2.7	65	87	6	243	25	1	27	46	1.60
57691000--57691043	18	2.4	18	84	0	61	47	9	27	15	1.76
57692671--57692701	15	2.1	15	93	0	53	64	6	0	29	1.18
57692858--57692957	51	2.0	50	84	7	130	44	4	26	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57692917--57692993	11	6.9	11	73	24	56	41	2	31	24	1.69
57692939--57692992	22	2.4	23	90	6	92	42	1	31	24	1.65
57697015--57697075	25	2.3	27	75	8	72	49	0	6	44	1.28
57701516--57701568	27	2.0	27	81	7	63	41	1	3	52	1.30
57701886--57701930	23	2.0	23	86	8	65	48	0	0	51	1.00
57701924--57701970	19	2.4	20	80	20	55	34	0	2	63	1.06
57705742--57705770	6	4.8	6	100	0	58	17	13	17	51	1.76
57705940--57705986	24	1.9	25	82	4	60	55	0	4	40	1.19
57707022--57707075	28	1.9	28	96	0	99	27	31	27	12	1.93
57709877--57709983	38	2.7	39	77	7	110	32	26	18	22	1.97
57710078--57710131	18	3.1	19	79	12	62	33	20	0	46	1.51
57710651--57710708	29	2.0	29	80	12	66	41	25	1	31	1.66
57710853--57710904	25	2.1	25	85	7	70	0	28	3	67	1.08
57710893--57710922	15	1.9	16	93	6	53	10	13	10	66	1.44
57711390--57711450	8	8.0	8	80	14	58	60	1	0	37	1.07
57711380--57711436	29	2.0	29	89	6	89	52	3	0	43	1.18
57711390--57711450	29	2.1	29	81	6	70	60	1	0	37	1.07
57715425--57715499	37	2.0	37	94	0	132	21	13	20	45	1.84
57723691--57723742	23	2.3	23	86	6	70	48	17	3	30	1.65
57727596--57728432	110	7.6	109	90	4	1237	34	18	15	30	1.93
57728171--57728408	119	2.0	119	97	0	449	34	18	15	31	1.92
57728641--57728715	39	1.9	39	84	10	100	56	0	4	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57728762--57728808	16	2.9	16	78	12	51	53	4	4	38	1.40
57728852--57728892	14	2.8	16	78	17	52	58	4	0	36	1.20
57728819--57728861	2	21.5	2	90	0	68	48	2	2	46	1.27
57737880--57737911	17	1.9	16	93	6	55	31	0	0	68	0.90
57738269--57738295	2	13.5	2	100	0	54	48	0	0	51	1.00
57742145--57742169	13	1.9	13	100	0	50	52	0	0	48	1.00
57743126--57743164	18	2.2	18	86	9	53	15	0	10	74	1.07
57743673--57743732	27	2.2	27	80	13	70	63	1	0	35	1.05
57743672--57743731	28	2.1	28	82	11	70	61	1	0	36	1.06
57748033--57748080	24	2.0	24	87	0	69	25	25	18	31	1.98
57750133--57750191	31	1.9	31	85	0	82	25	11	8	54	1.65
57751934--57751974	20	2.0	20	100	0	82	51	9	24	14	1.72
57763700--57763750	25	2.0	25	96	0	93	25	5	37	31	1.80
57768797--57768832	19	1.9	18	88	5	54	30	22	11	36	1.89
57774938--57775024	43	2.0	43	95	0	156	13	10	36	39	1.79
57774943--57775011	22	3.2	22	60	12	52	14	8	39	37	1.77
57778765--57778817	24	2.2	24	93	0	88	35	35	7	20	1.81
57782152--57782205	22	2.4	22	73	14	56	29	1	20	48	1.60
57783687--57783849	69	2.4	69	81	0	191	33	17	27	21	1.96
57783687--57783882	69	2.8	69	79	0	167	32	19	27	20	1.97
57787334--57787396	30	2.1	30	96	0	117	26	3	12	57	1.51
57787520--57787552	11	2.9	12	86	13	52	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57797461--57797493	3	11.0	3	100	0	66	66	0	0	33	0.92
57802277--57802317	17	2.4	17	83	0	55	34	0	2	63	1.08
57802297--57802364	29	2.3	29	82	10	84	47	0	1	51	1.09
57802298--57802366	28	2.4	29	76	11	79	47	0	1	50	1.09
57807373--57807421	24	2.0	25	84	8	64	71	8	2	18	1.21
57807759--57807787	8	3.6	8	100	0	58	89	0	10	0	0.48
57808552--57808583	15	2.1	15	94	0	55	21	0	0	78	0.76
57809531--57809568	18	2.1	19	90	5	60	36	2	18	42	1.64
57809624--57809695	34	2.1	34	82	14	87	51	2	5	40	1.40
57809856--57809936	3	27.7	3	91	5	121	67	2	0	29	1.03
57816675--57816778	37	2.7	38	80	5	120	23	15	25	35	1.94
57818201--57818240	13	3.0	14	82	10	57	50	15	17	17	1.79
57819050--57819108	24	2.4	25	81	13	70	38	11	6	42	1.68
57822560--57822584	3	8.3	3	100	0	50	36	32	0	32	1.58
57825477--57825509	16	2.1	16	100	0	66	36	30	6	27	1.81
57829362--57829397	3	12.0	3	100	0	72	33	0	33	33	1.58
57830120--57830254	41	3.1	41	69	18	128	45	12	5	35	1.66
57830159--57830191	17	1.9	17	100	0	66	42	18	0	39	1.50
57830758--57830833	29	2.5	30	85	6	91	44	11	10	32	1.75
57832489--57832570	40	2.0	40	95	0	146	32	14	23	29	1.94
57835193--57835227	17	2.2	15	90	10	52	0	11	0	88	0.51
57838991--57839032	19	2.2	20	82	4	50	40	4	16	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57843967--57844021	28	1.9	29	85	3	76	45	3	34	16	1.65
57853491--57853515	13	1.9	13	100	0	50	32	4	0	64	1.12
57856021--57856053	2	16.5	2	100	0	66	51	0	0	48	1.00
57861487--57861528	21	2.0	21	100	0	84	19	14	4	61	1.49
57866836--57866944	57	1.9	57	86	3	157	24	26	18	30	1.98
57876126--57876173	2	24.0	2	100	0	96	50	0	0	50	1.00
57876341--57876513	89	2.0	88	84	3	231	38	21	8	31	1.83
57876537--57876670	9	14.6	9	66	13	58	63	0	2	34	1.07
57876543--57876674	38	3.5	39	80	12	134	62	0	2	35	1.08
57876800--57876830	9	3.4	9	90	0	53	25	12	22	38	1.90
57876883--57876919	9	4.1	9	89	0	56	45	10	10	32	1.74
57878110--57878211	29	3.5	28	79	12	98	29	2	3	63	1.27
57878157--57878231	20	3.8	20	74	8	64	28	2	4	65	1.24
57878110--57878219	58	1.9	58	83	7	143	29	2	3	64	1.24
57878302--57878453	18	8.7	17	68	16	62	32	3	1	61	1.23
57878358--57878396	16	2.4	16	86	0	51	30	2	2	64	1.21
57878166--57878451	133	2.1	133	87	5	405	31	3	2	62	1.26
57878305--57878380	9	8.6	9	70	13	59	30	5	1	63	1.25
57885281--57885330	19	2.6	19	83	3	64	52	6	6	36	1.51
57886425--57886454	12	2.4	13	94	5	53	73	0	13	13	1.10
57886654--57886809	44	3.5	44	80	6	147	28	21	19	30	1.98
57904160--57904376	91	2.4	84	82	9	236	40	17	8	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57904474--57904526	27	2.0	27	84	0	70	67	0	3	28	1.07
57904464--57904505	18	2.3	19	79	4	50	71	0	9	19	1.13
57904668--57904700	11	3.1	11	91	4	50	30	3	0	66	1.06
57904665--57904706	10	4.2	10	82	8	50	26	2	0	71	0.98
57904951--57905145	91	2.2	89	83	3	230	32	10	21	35	1.87
57909514--57909581	31	2.2	31	86	2	102	30	10	13	45	1.76
57911496--57911544	24	2.1	23	84	3	62	24	8	24	42	1.81
57916060--57916108	24	2.1	23	84	3	62	24	8	24	42	1.81
57918570--57918594	6	4.2	6	100	0	50	0	16	48	36	1.46
57923664--57923701	16	2.2	17	86	9	51	68	2	7	21	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206