genome.fa.s2.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  114  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34053538--34053593	21	2.7	21	85	0	76	26	7	37	28	1.83
34053897--34053930	17	1.9	18	88	5	52	50	2	2	44	1.32
34057497--34057597	31	3.3	31	78	10	125	25	19	15	38	1.92
34058113--34058183	37	1.9	37	97	0	133	50	0	9	39	1.36
34058119--34058187	19	3.7	19	82	5	97	53	0	8	37	1.32
34058263--34058348	27	3.2	26	85	4	102	19	26	23	30	1.98
34058386--34058482	27	3.5	27	92	5	151	48	0	12	39	1.41
34062816--34062944	40	3.2	40	83	4	145	31	22	24	22	1.99
34062816--34062968	40	3.8	41	77	10	138	32	21	22	23	1.98
34062953--34063026	25	3.0	25	97	0	139	50	24	16	9	1.74
34063040--34063276	41	5.8	41	93	1	370	26	18	25	30	1.98
34063681--34063745	14	4.6	14	80	0	58	24	0	40	35	1.56
34063701--34063763	29	2.2	28	82	2	72	26	1	36	34	1.67
34063762--34063938	95	1.9	95	87	2	266	24	0	29	45	1.58
34063912--34063963	21	2.4	22	80	6	70	21	0	40	38	1.53
34064930--34065043	50	2.3	50	90	0	174	25	0	33	41	1.56
34065869--34065912	21	2.0	21	86	8	61	45	38	0	15	1.47
34066783--34067178	43	9.3	43	88	3	491	25	18	30	25	1.98
34066783--34067178	129	3.1	129	86	4	559	25	18	30	25	1.98
34067486--34067525	19	2.1	19	86	9	55	60	12	5	22	1.52
34071470--34071532	31	2.1	31	96	3	119	52	12	6	28	1.64
34074298--34074326	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34074379--34074410	2	16.5	2	93	6	57	50	0	0	50	1.00
34083907--34083943	17	2.2	17	100	0	74	45	0	16	37	1.47
34085312--34085498	87	2.1	87	86	2	259	32	26	25	16	1.96
34087414--34087465	21	2.5	21	93	0	86	36	25	17	21	1.94
34088119--34088143	6	4.2	6	100	0	50	52	0	0	48	1.00
34090184--34090251	27	2.4	29	88	7	97	44	2	0	52	1.16
34090185--34090251	29	2.4	27	87	7	91	44	2	0	52	1.16
34090412--34090448	18	2.0	18	94	5	65	54	0	45	0	1.00
34090441--34090542	10	10.1	10	66	14	57	70	0	28	0	0.94
34090444--34090547	24	4.4	23	70	20	81	70	0	28	0	0.94
34090423--34090544	34	3.8	30	74	21	88	68	0	31	0	0.96
34090421--34090553	24	5.7	23	69	24	73	66	0	32	0	0.97
34090413--34090592	19	9.1	20	72	21	105	67	0	32	0	0.95
34091110--34091139	16	1.9	15	93	6	51	70	0	3	26	1.03
34091321--34091376	27	2.1	27	89	0	85	46	14	30	8	1.75
34092045--34092110	22	3.0	22	93	0	105	33	15	25	25	1.95
34097118--34097153	3	12.0	3	93	0	63	63	33	2	0	1.08
34097513--34097583	30	2.5	29	84	13	94	46	0	9	43	1.37
34097513--34097583	27	2.6	27	88	8	99	46	0	9	43	1.37
34101836--34101873	9	4.3	9	90	3	60	50	7	7	34	1.61
34101951--34102022	20	3.7	19	81	7	74	55	5	0	38	1.23
34101952--34102028	19	4.1	19	80	14	79	53	5	0	41	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34102362--34102391	15	2.0	15	93	0	51	26	23	13	36	1.92
34103485--34103520	9	3.8	9	92	7	54	55	0	8	36	1.30
34106311--34106499	25	7.6	24	86	5	100	31	20	25	23	1.98
34106315--34106504	50	3.8	50	84	4	226	31	20	25	22	1.98
34106334--34106504	75	2.3	73	87	3	234	32	19	26	22	1.97
34114172--34114281	50	2.2	51	83	4	136	37	15	22	24	1.93
34114172--34114283	25	4.5	25	83	4	120	37	15	22	25	1.93
34122371--34122440	28	2.5	28	90	0	104	37	5	7	50	1.54
34130755--34131049	27	10.9	27	90	0	401	39	18	15	25	1.91
34137795--34137887	26	3.8	24	77	13	82	25	24	20	29	1.99
34137802--34137863	23	2.5	26	82	15	78	29	24	17	29	1.97
34147140--34147337	50	3.9	51	84	6	224	26	21	29	22	1.99
34147203--34147388	50	3.8	49	83	3	187	26	23	27	22	1.99
34147590--34147638	20	2.5	20	81	15	66	57	6	24	12	1.58
34152076--34152116	20	2.0	20	100	0	82	34	4	19	41	1.73
34169352--34169457	36	2.9	36	82	0	140	23	24	15	36	1.93
34182008--34182043	16	2.2	16	90	0	54	50	0	33	16	1.46
34182212--34182254	22	2.0	22	86	9	61	6	30	0	62	1.21
34184442--34184492	3	17.0	3	100	0	102	33	0	0	66	0.92
34184593--34184641	24	2.0	24	84	7	64	22	8	0	69	1.14
34185855--34185915	31	1.9	32	83	6	79	36	11	13	39	1.80
34186329--34186366	18	2.1	18	90	0	58	44	0	5	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34189569--34189599	4	8.0	4	92	7	55	51	0	0	48	1.00
34191793--34192151	40	8.9	40	87	2	265	33	18	30	16	1.93
34191847--34192071	20	11.2	20	66	9	91	34	18	30	16	1.94
34191845--34192151	40	7.7	40	89	0	425	34	17	30	17	1.93
34192075--34192133	20	3.0	20	69	0	64	37	13	32	16	1.88
34196833--34196913	38	2.2	37	80	14	87	66	3	2	27	1.21
34197157--34197204	25	2.0	25	91	4	80	35	10	8	45	1.68
34197700--34197745	24	1.9	24	86	0	65	15	4	30	50	1.63
34201776--34201936	34	4.7	34	79	10	159	32	13	14	40	1.84
34201796--34201936	68	2.1	68	83	2	185	32	13	13	40	1.83
34202056--34202173	44	2.7	44	82	0	146	25	19	20	34	1.96
34205861--34206228	102	3.6	102	89	0	583	31	30	20	17	1.96
34207130--34207247	59	2.0	59	98	0	227	31	27	8	32	1.87
34212188--34212423	116	2.0	117	92	0	393	40	27	6	25	1.79
34215438--34215543	29	3.6	29	74	6	72	32	10	23	33	1.89
34223923--34225903	998	2.0	998	97	0	3782	37	10	15	36	1.82
34237687--34237780	44	2.1	45	92	4	163	35	15	13	35	1.88
34260394--34260443	22	2.3	22	82	6	66	24	0	40	36	1.55
34260417--34260723	7	43.9	7	66	14	80	18	0	39	41	1.58
34260395--34260492	21	4.6	21	73	6	63	20	0	42	36	1.52
34260572--34260640	36	1.9	35	88	2	102	21	0	36	42	1.53
34260557--34260615	22	2.7	22	82	7	68	20	0	40	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34263078--34263185	29	3.9	29	79	11	127	37	2	8	51	1.46
34263102--34263149	25	2.0	25	91	4	80	37	0	12	50	1.41
34272648--34272843	46	4.3	45	78	3	187	43	13	20	22	1.86
34272657--34272827	45	3.8	45	82	3	175	46	12	19	20	1.83
34274294--34274381	25	3.4	25	77	13	88	28	6	6	57	1.50
34279057--34279125	26	2.7	26	84	4	77	73	7	5	13	1.22
34279070--34279125	26	2.1	27	86	3	78	75	5	7	12	1.18
34279119--34279154	14	2.5	15	86	9	56	72	2	8	16	1.21
34279139--34279180	22	1.9	22	85	9	59	71	0	19	9	1.13
34280008--34280152	48	3.0	49	81	3	186	46	20	18	13	1.83
34280144--34280178	15	2.3	15	90	5	52	88	0	8	2	0.61
34281404--34281578	88	2.0	89	85	3	235	28	25	24	21	1.99
34281583--34281879	132	2.2	132	89	2	454	31	21	20	25	1.98
34281890--34282487	132	4.5	132	84	2	765	31	21	22	25	1.98
34281715--34282079	175	2.1	175	85	2	500	31	21	20	25	1.98
34281572--34282210	306	2.1	307	90	1	996	31	21	20	25	1.98
34281890--34282484	131	4.5	132	84	2	759	31	21	22	25	1.98
34281890--34282908	263	3.8	263	74	10	904	30	20	22	26	1.98
34282038--34282233	44	4.5	44	64	14	116	34	20	21	23	1.97
34282158--34282342	44	4.2	43	69	13	135	32	21	20	25	1.98
34282246--34282560	175	1.8	175	81	2	400	31	20	21	26	1.98
34282444--34282530	43	2.0	43	84	2	111	31	14	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34282615--34282908	132	2.2	134	87	2	425	30	19	22	27	1.98
34282615--34282947	132	2.5	131	81	7	388	30	19	21	28	1.97
34282615--34283095	44	10.9	44	65	17	146	30	18	22	27	1.98
34282726--34283079	176	2.0	176	84	5	466	30	17	23	29	1.97
34282881--34283216	132	2.5	131	84	5	394	29	19	23	27	1.99
34282615--34283283	308	2.2	308	89	0	1027	30	18	22	27	1.98
34283348--34283435	44	2.0	45	81	2	106	27	21	28	22	1.99
34285140--34285227	25	3.4	25	77	13	88	28	6	6	57	1.50
34293125--34293397	45	6.0	45	85	0	321	44	12	21	21	1.85
34293125--34293340	91	2.4	90	87	2	308	45	12	20	21	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206