genome.fa.s2.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  137  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41893470--41893504	18	1.9	18	88	0	52	17	42	0	40	1.49
41899549--41899595	13	3.6	13	72	11	51	31	14	10	42	1.80
41900075--41900141	31	2.2	31	83	0	89	37	13	22	26	1.91
41901861--41901898	18	2.2	17	86	13	51	68	2	5	23	1.23
41903277--41903796	259	2.0	259	91	2	848	28	11	19	40	1.86
41910191--41910223	17	1.9	17	100	0	66	54	24	3	18	1.57
41911215--41911241	14	1.9	14	100	0	54	62	14	0	22	1.31
41945715--41945774	20	3.2	19	72	13	52	73	3	6	16	1.18
41945731--41945786	29	1.9	28	86	13	78	69	1	10	17	1.26
41945906--41945973	27	2.5	28	76	11	70	29	16	11	42	1.83
41946008--41946085	30	2.6	30	77	6	86	35	10	6	47	1.63
41947270--41947318	2	24.5	2	81	8	55	51	4	2	42	1.32
41953915--41953941	14	1.9	14	100	0	54	37	25	14	22	1.93
41977224--41977470	50	4.8	50	81	7	221	29	21	26	22	1.99
41988037--41988151	62	1.9	60	84	12	155	28	13	18	39	1.89
41988134--41988170	9	4.1	9	89	0	56	48	10	10	29	1.72
41988384--41988443	30	2.0	31	86	3	86	20	40	0	40	1.52
41989201--41989226	10	2.6	10	100	0	52	26	19	11	42	1.85
41993343--41993420	27	2.9	27	92	0	138	19	16	20	43	1.88
41995833--41995878	21	2.2	21	81	11	51	56	13	0	30	1.37
41996247--41996287	21	2.0	21	85	0	55	12	4	21	60	1.50
41996352--41996390	18	2.2	18	90	4	62	20	2	17	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41998230--41998276	19	2.5	19	86	6	60	29	19	6	44	1.75
42000997--42001046	23	2.0	26	88	11	79	78	12	10	0	0.98
42001006--42001047	19	2.2	19	91	0	66	80	11	7	0	0.88
42001414--42001550	52	2.7	52	87	3	188	40	21	26	11	1.87
42002418--42002529	51	2.3	47	81	9	118	26	17	20	34	1.95
42003964--42004015	27	1.9	27	92	0	86	26	25	23	25	2.00
42014022--42014349	51	6.5	51	86	1	444	29	17	25	28	1.97
42014022--42014347	151	2.1	153	86	1	458	29	17	25	28	1.97
42014262--42014634	194	1.9	194	88	2	570	27	19	23	29	1.98
42014445--42014548	51	2.0	51	83	3	129	28	15	23	32	1.95
42015555--42015590	17	2.2	17	90	5	56	8	8	5	77	1.11
42016680--42016720	21	2.0	21	85	0	55	12	4	21	60	1.50
42016785--42016823	18	2.2	18	90	4	62	20	2	17	58	1.50
42019012--42019051	18	2.2	18	90	0	62	32	15	5	47	1.66
42023181--42023489	43	7.2	43	89	1	397	21	26	22	29	1.99
42023181--42023489	86	3.6	86	87	1	440	21	26	22	29	1.99
42024162--42024221	17	3.5	17	75	8	59	36	1	16	45	1.58
42024165--42024248	34	2.3	36	86	8	109	34	1	16	47	1.55
42024189--42024345	46	3.3	46	70	15	145	33	1	17	47	1.56
42024165--42024221	9	6.8	8	76	7	51	33	1	17	47	1.58
42024195--42024250	17	3.1	17	74	18	58	37	0	14	48	1.44
42024960--42025006	21	2.2	21	84	0	58	46	0	12	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42027607--42028004	97	3.9	97	75	12	415	31	13	12	42	1.80
42027458--42028057	210	2.9	210	97	0	1112	30	12	12	44	1.79
42028082--42028458	96	3.7	97	83	12	515	29	13	12	43	1.82
42027845--42028302	244	1.9	245	97	0	864	28	14	12	44	1.82
42028081--42028524	210	2.1	208	95	1	800	29	13	12	44	1.80
42027622--42029140	454	3.3	455	95	0	2673	29	13	12	44	1.80
42028286--42028775	247	2.0	251	95	1	880	28	13	12	44	1.81
42028539--42028916	97	3.7	97	71	14	348	29	14	12	43	1.82
42028614--42028819	114	1.8	113	93	2	358	30	13	11	45	1.78
42028533--42028984	211	2.2	211	95	2	804	29	13	12	45	1.79
42029424--42029525	22	4.7	21	69	17	66	34	41	0	23	1.61
42029466--42029504	7	5.4	7	81	6	51	35	46	0	17	1.49
42029466--42029507	15	2.9	15	89	3	59	35	47	0	16	1.47
42029434--42029539	21	5.0	22	74	8	67	35	40	0	23	1.55
42029527--42029568	14	2.9	14	82	6	57	35	35	0	28	1.58
42030108--42030589	114	4.2	114	92	0	793	25	26	22	24	2.00
42030493--42030660	73	2.3	72	91	1	273	23	27	23	25	2.00
42032005--42032179	51	3.5	51	84	3	219	22	9	16	52	1.72
42032005--42032211	51	4.1	49	79	8	182	22	10	14	52	1.72
42031996--42032179	101	1.8	102	81	5	221	22	10	15	51	1.74
42033774--42033803	12	2.5	12	88	0	51	73	0	10	16	1.09
42038792--42038898	51	2.1	51	89	0	160	20	41	16	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42056251--42056291	11	3.6	11	81	18	57	78	7	0	14	0.96
42056238--42056291	12	4.7	12	80	13	51	72	9	1	16	1.19
42063953--42064000	24	2.0	23	88	4	69	37	4	47	10	1.57
42067701--42067767	35	1.9	35	90	3	109	31	8	10	49	1.68
42067735--42067771	15	2.5	15	91	4	58	27	8	16	48	1.74
42067751--42067832	32	2.5	31	78	7	92	24	10	18	46	1.81
42070328--42070376	25	2.0	25	92	8	82	42	8	24	24	1.81
42070761--42070875	20	5.8	20	77	8	99	10	30	20	38	1.86
42074829--42074903	38	2.0	37	82	7	89	36	28	6	29	1.82
42076999--42077037	21	1.9	20	84	5	51	20	41	15	23	1.90
42077725--42077782	20	2.8	21	79	10	75	36	24	31	8	1.85
42077725--42077811	40	2.2	40	81	10	97	39	24	28	8	1.83
42080968--42081055	43	2.0	43	97	0	167	53	27	7	11	1.64
42084915--42084988	28	2.6	28	85	4	96	27	24	20	28	1.99
42085361--42085998	27	23.2	27	84	5	762	17	18	19	44	1.88
42085429--42085503	38	2.0	38	91	0	123	17	10	25	46	1.80
42085402--42085530	65	2.0	65	93	0	222	17	14	22	44	1.85
42094790--42094834	2	22.5	2	100	0	90	0	48	0	51	1.00
42096701--42096754	28	1.9	28	88	0	81	31	22	25	20	1.98
42096946--42097023	32	2.4	32	93	0	129	39	20	19	20	1.92
42097266--42097404	27	5.1	27	91	0	179	21	17	22	38	1.94
42097266--42097417	54	2.8	54	89	4	225	22	17	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42102663--42102747	25	3.1	25	77	19	98	54	0	0	45	1.00
42102666--42102708	15	2.9	15	78	0	50	46	0	0	53	1.00
42102665--42102758	27	3.2	31	73	14	108	52	0	0	47	1.00
42102747--42102816	35	2.0	35	86	5	97	48	0	4	47	1.21
42102750--42102806	23	2.5	22	80	8	60	50	0	5	43	1.24
42105206--42105247	21	2.0	21	100	0	84	38	9	0	52	1.34
42105300--42105384	27	3.1	27	86	0	116	27	28	27	17	1.98
42105309--42105400	27	3.4	26	81	14	98	25	26	28	20	1.99
42105526--42105564	19	2.0	21	85	10	55	23	0	10	66	1.22
42106496--42106540	18	2.5	18	96	0	81	28	4	51	15	1.63
42114638--42114764	4	31.0	4	72	20	77	0	31	0	68	0.90
42114629--42114765	45	3.2	45	81	8	144	0	32	0	67	0.91
42114627--42114760	40	3.5	42	86	12	182	0	32	0	67	0.91
42114631--42114760	18	6.8	18	69	22	79	0	32	0	67	0.91
42114717--42114775	18	3.1	18	75	17	55	0	37	0	62	0.95
42114900--42114933	17	1.9	17	88	5	50	11	0	5	82	0.83
42115204--42115228	13	1.9	13	100	0	50	16	0	20	64	1.30
42115200--42115265	23	2.8	24	81	4	80	15	0	21	63	1.30
42115200--42115262	24	2.7	23	78	11	65	14	0	20	65	1.27
42115226--42115252	14	1.9	14	100	0	54	11	0	22	66	1.22
42115250--42115311	20	3.3	18	74	22	56	22	4	6	66	1.35
42115332--42115379	19	2.5	20	83	13	64	41	0	6	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42117945--42118053	40	2.7	40	86	0	137	18	26	16	38	1.92
42125239--42125309	33	2.2	33	94	0	124	5	38	12	43	1.66
42127643--42127738	36	2.7	36	90	1	149	41	18	7	32	1.78
42127933--42128060	43	3.0	43	79	6	120	34	28	17	20	1.95
42130393--42130422	12	2.4	13	94	5	53	6	36	0	56	1.26
42131417--42131495	27	2.9	27	88	0	104	21	25	18	34	1.96
42133100--42133226	43	3.0	43	80	6	127	31	29	19	19	1.97
42134333--42134437	48	2.2	48	86	1	149	46	20	3	28	1.68
42144207--42144338	19	6.8	19	88	3	201	37	10	15	37	1.82
42144207--42144345	59	2.4	57	87	6	201	37	10	15	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206