genome.fa.s2.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  55  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15496988--15497164	82	2.2	82	95	0	318	27	21	28	22	1.99
15496988--15497187	82	2.4	82	91	0	274	28	20	28	23	1.99
15497324--15497352	2	14.5	2	100	0	58	48	0	0	51	1.00
15497377--15497458	40	2.0	40	85	0	110	32	9	19	37	1.85
15498576--15498631	13	4.3	13	82	10	62	51	0	5	42	1.24
15498576--15498631	26	2.2	26	84	12	71	51	0	5	42	1.24
15501288--15501318	7	4.4	7	100	0	62	41	0	12	45	1.42
15504451--15504504	5	10.2	5	96	4	81	81	0	18	0	0.69
15504575--15504613	6	6.5	6	87	0	60	28	15	33	23	1.95
15504575--15504613	18	2.2	18	100	0	78	28	15	33	23	1.95
15521238--15521318	41	2.0	41	100	0	162	29	27	22	20	1.99
15522613--15522672	27	2.2	27	81	0	66	26	20	33	20	1.97
15524086--15524176	27	3.4	26	84	3	119	38	20	21	18	1.93
15524911--15524943	3	10.7	3	93	6	57	66	0	33	0	0.92
15533390--15533442	23	2.3	21	78	15	52	43	1	1	52	1.23
15533434--15533495	20	3.3	19	80	8	65	38	3	4	53	1.39
15533432--15533485	20	2.8	20	80	8	67	44	3	3	48	1.38
15534791--15534963	43	4.1	42	78	5	179	29	15	23	31	1.95
15534791--15534963	85	2.0	84	85	1	229	29	15	23	31	1.95
15537926--15538122	100	2.0	100	93	0	340	58	3	9	27	1.46
15538283--15538309	14	1.9	14	100	0	54	25	0	0	74	0.83
15541722--15541806	41	2.1	41	100	0	170	35	8	21	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15544364--15544421	28	2.1	28	87	6	82	50	25	1	22	1.59
15544586--15544619	18	1.9	18	88	5	52	50	0	0	50	1.00
15555997--15556183	51	3.7	51	72	6	182	29	26	17	26	1.98
15555995--15556179	101	1.8	102	87	5	277	29	25	17	26	1.98
15560142--15560174	14	2.4	14	100	0	66	33	30	18	18	1.94
15561409--15561463	2	27.5	2	96	0	101	47	0	1	50	1.11
15561995--15562184	98	1.9	98	92	2	319	28	11	23	36	1.89
15564700--15564801	39	2.6	39	89	3	125	17	24	29	28	1.97
15566113--15566346	71	3.2	70	77	11	193	29	23	17	29	1.97
15566198--15566343	78	1.9	78	86	0	211	29	21	17	31	1.96
15567681--15567721	21	1.9	22	85	5	57	29	12	21	36	1.90
15570806--15570882	14	5.0	15	71	20	52	42	15	9	32	1.78
15570822--15570861	20	2.0	20	90	0	62	50	12	10	27	1.72
15570810--15570876	34	1.9	35	90	3	109	46	13	8	31	1.74
15570845--15570884	14	2.9	14	84	0	53	42	17	7	32	1.77
15579392--15579437	16	2.9	16	80	6	58	52	0	0	47	1.00
15582520--15582553	17	2.0	17	100	0	68	35	23	29	11	1.90
15583920--15584068	42	3.5	42	79	3	156	43	16	22	16	1.87
15583920--15584068	21	7.1	21	68	3	102	43	16	22	16	1.87
15589784--15589848	29	2.2	29	84	10	80	53	0	3	43	1.16
15590252--15590294	2	21.5	2	100	0	86	48	0	0	51	1.00
15591674--15591700	5	5.4	5	100	0	54	0	0	18	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15597205--15597262	22	2.6	22	81	7	64	41	17	5	36	1.72
15597844--15598398	45	12.7	45	73	12	318	25	23	21	29	1.99
15597933--15598410	216	2.2	218	89	3	714	25	24	20	29	1.99
15598758--15598878	44	2.8	42	88	3	170	27	26	19	26	1.99
15598878--15599367	88	5.6	88	90	1	768	19	23	28	27	1.99
15600697--15600729	14	2.3	15	89	5	50	27	30	12	30	1.92
15601553--15601613	26	2.3	26	83	5	70	57	4	14	22	1.57
15605961--15606018	22	2.6	22	81	7	64	41	17	5	36	1.72
15611225--15611270	23	2.0	23	100	0	92	39	13	8	39	1.75
15622022--15622090	30	2.3	30	94	0	120	34	27	0	37	1.57
15627007--15627254	126	2.0	123	82	10	299	29	15	16	37	1.90
15627335--15627442	33	3.2	33	84	2	135	47	12	0	38	1.49
15627487--15627557	21	3.4	21	64	0	61	46	26	0	26	1.53
15627487--15627572	42	2.0	42	91	4	138	46	27	0	25	1.53
15630315--15630347	4	8.2	4	100	0	66	24	0	0	75	0.80
15630511--15630938	109	3.9	109	87	3	596	32	16	16	34	1.92
15634640--15634696	17	3.2	17	78	7	60	77	0	21	1	0.86
15634629--15634688	24	2.6	22	80	17	68	78	0	20	1	0.84
15635442--15635880	50	8.8	50	70	3	285	30	22	21	25	1.98
15635414--15635875	99	4.6	100	86	1	570	30	22	20	25	1.98
15638019--15638444	109	3.9	109	90	2	644	31	17	18	33	1.94
15642216--15642272	30	1.9	30	88	0	87	42	3	24	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15642484--15642515	13	2.5	13	94	0	55	31	0	12	56	1.37
15642610--15642858	50	4.8	50	88	5	329	26	22	28	21	1.99
15672068--15672097	7	4.3	7	91	0	51	50	13	36	0	1.42
15686650--15686710	24	2.6	24	77	12	63	45	16	16	21	1.85
15686625--15686720	24	4.0	24	73	9	61	39	15	21	22	1.91
15693825--15693880	27	2.1	27	100	0	112	53	7	3	35	1.46
15696633--15696750	35	3.2	36	77	9	114	36	24	18	20	1.95
15696870--15697023	43	3.6	43	84	4	193	27	28	18	25	1.98
15697088--15697143	23	2.4	24	79	8	62	53	3	1	41	1.29
15702275--15702312	14	2.7	15	88	12	62	42	31	0	26	1.56
15702103--15702712	321	1.9	314	84	8	802	41	28	2	28	1.67
15702586--15702634	17	2.9	17	85	8	57	40	26	0	32	1.56
15703033--15703292	113	2.3	113	97	0	493	26	25	20	27	1.99
15703307--15703335	13	2.2	13	100	0	58	10	13	27	48	1.75
15703339--15703364	12	2.2	12	100	0	52	46	30	15	7	1.74
15706470--15706510	19	2.2	19	86	0	55	34	4	4	56	1.42
15706523--15706548	11	2.4	11	100	0	52	23	0	0	76	0.78
15711106--15711151	3	16.3	3	79	20	55	73	0	26	0	0.83
15711099--15711151	21	2.5	21	82	14	65	77	0	22	0	0.77
15711100--15711151	25	2.0	26	92	3	88	76	0	23	0	0.78
15711099--15711151	5	10.2	5	86	11	63	77	0	22	0	0.77
15711098--15711151	28	2.0	26	85	7	72	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15712479--15712512	16	2.1	16	88	0	50	50	20	0	29	1.49
15716900--15716928	2	14.5	2	100	0	58	48	0	0	51	1.00
15719526--15719566	3	13.7	3	94	0	55	39	0	60	0	0.96
15719704--15719734	4	7.5	4	96	3	53	25	3	45	25	1.69
15726426--15726470	24	1.9	23	86	4	63	60	8	13	17	1.58
15727078--15727109	13	2.5	13	100	0	64	46	0	0	53	1.00
15729647--15729671	2	12.5	2	100	0	50	0	0	48	52	1.00
15730217--15730250	16	2.1	16	94	0	59	47	17	2	32	1.63
15738788--15738916	43	3.0	43	82	6	154	30	29	18	21	1.97
15741777--15742541	92	8.3	92	92	0	1244	33	6	16	43	1.74
15745716--15745798	42	2.0	42	83	4	105	22	25	20	31	1.98
15746872--15746915	21	2.1	21	100	0	88	40	9	13	36	1.76
15749066--15749164	23	4.3	23	88	0	144	30	26	20	23	1.98
15749066--15749163	46	2.1	46	92	0	160	30	26	20	22	1.98
15753031--15753077	24	2.0	24	83	8	60	17	34	0	48	1.47
15757026--15757370	102	3.4	102	84	3	385	30	15	24	30	1.95
15757026--15757363	51	6.7	49	78	7	302	29	15	24	30	1.95
15758007--15759353	670	2.0	670	94	1	2333	34	9	17	39	1.81
15759604--15759637	16	2.1	16	88	0	50	50	20	2	26	1.63
15759902--15759974	36	2.0	36	89	0	110	28	23	9	38	1.86
15761668--15761790	41	2.9	41	79	9	122	26	17	25	30	1.98
15766041--15766080	19	2.0	20	85	4	55	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15767211--15767235	7	3.6	7	100	0	50	44	0	12	44	1.41
15773824--15773853	13	2.3	13	94	0	51	30	16	0	53	1.44
15778195--15778240	23	2.0	23	87	8	67	47	2	4	45	1.34
15778884--15778923	16	2.5	16	80	12	55	60	2	0	37	1.11
15778879--15778967	13	6.4	14	73	11	76	50	4	0	44	1.22
15781761--15781806	19	2.5	19	73	16	51	50	2	2	45	1.26
15796807--15796880	29	2.5	29	84	8	87	47	8	16	28	1.75
15798758--15798805	21	2.3	21	75	7	53	58	0	10	31	1.32
15808568--15808760	27	7.3	26	81	5	181	43	22	15	19	1.88
15808580--15808760	53	3.4	52	80	4	191	42	22	15	19	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206