genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  100  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29291836--29291966	51	2.6	50	82	3	147	28	29	16	26	1.97
29295214--29295257	21	2.1	21	100	0	88	27	22	13	36	1.92
29303457--29303665	113	1.9	112	81	7	253	36	13	13	36	1.85
29312576--29312616	20	2.0	22	85	9	59	70	2	0	26	0.99
29312754--29312800	9	5.4	9	77	10	53	34	2	0	63	1.06
29312754--29312800	17	2.8	17	80	9	60	34	2	0	63	1.06
29312762--29312812	25	2.1	24	82	10	59	39	3	0	56	1.18
29313462--29313508	23	2.0	24	84	15	64	29	23	10	36	1.89
29318057--29318181	59	2.1	59	95	0	223	38	9	11	40	1.74
29318245--29318471	21	10.7	21	87	2	321	24	0	29	45	1.54
29318245--29318471	64	3.6	64	88	1	334	24	0	29	45	1.54
29318541--29318590	21	2.4	21	89	0	82	26	0	30	44	1.55
29319125--29319167	18	2.4	19	84	7	54	39	9	30	20	1.84
29321127--29321168	11	3.8	11	83	0	57	50	4	23	21	1.68
29340479--29340702	27	8.3	27	84	0	250	20	17	18	42	1.89
29340479--29340702	81	2.8	81	86	2	315	20	17	18	42	1.89
29345446--29345483	8	4.6	8	90	6	58	34	0	2	63	1.09
29345446--29345483	17	2.3	17	90	4	60	34	0	2	63	1.09
29350719--29350909	100	1.9	99	81	3	231	27	20	24	27	1.99
29358024--29358125	51	2.0	51	94	0	177	21	16	33	28	1.95
29365911--29365935	13	1.9	13	100	0	50	36	0	8	56	1.29
29374505--29374570	21	3.0	22	72	20	57	13	1	10	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29377261--29377285	13	1.9	13	100	0	50	36	0	8	56	1.29
29386929--29387125	40	4.9	40	84	1	234	33	16	25	24	1.96
29392468--29392509	21	2.0	21	86	9	59	47	2	0	50	1.14
29394461--29394540	30	2.7	30	84	3	99	30	13	21	35	1.92
29401882--29401939	30	1.9	30	85	0	80	27	36	22	13	1.92
29403539--29403573	3	11.7	3	100	0	70	31	0	0	68	0.90
29403572--29403623	3	17.3	3	95	0	95	0	0	30	69	0.89
29408588--29408648	26	2.3	26	86	5	79	24	13	1	60	1.42
29409417--29409449	5	6.8	5	89	3	50	87	12	0	0	0.53
29409404--29409449	10	4.7	10	86	2	67	89	10	0	0	0.50
29409407--29409449	15	2.9	14	86	13	59	88	11	0	0	0.52
29409404--29409448	17	2.6	17	86	13	65	88	11	0	0	0.50
29410671--29410902	44	5.3	44	68	4	189	25	28	25	20	1.99
29410614--29410943	88	3.8	88	93	0	554	27	29	24	18	1.98
29410915--29411792	87	10.1	87	92	1	1492	27	22	24	25	2.00
29414600--29414658	3	19.7	3	89	0	91	32	0	3	64	1.10
29415366--29415588	9	23.3	9	65	18	62	60	3	3	33	1.28
29415385--29415455	28	2.5	28	80	11	74	64	4	0	30	1.12
29415442--29415496	20	2.8	20	78	8	60	56	1	0	41	1.10
29415437--29415560	29	4.2	30	70	12	87	60	1	3	34	1.22
29415847--29415902	3	19.0	3	96	3	105	67	0	0	32	0.91
29416014--29416294	10	30.4	9	67	17	98	29	2	4	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29416148--29416296	9	16.6	9	69	12	76	28	2	3	65	1.22
29418232--29418279	20	2.4	20	92	0	78	27	22	14	35	1.93
29419781--29420115	70	4.9	70	77	7	292	28	25	17	28	1.97
29419858--29419988	63	2.1	63	88	1	192	29	23	16	30	1.96
29423153--29423187	17	2.1	17	89	5	54	48	5	14	31	1.67
29429236--29429394	41	3.9	41	88	4	214	20	19	25	33	1.96
29429233--29429435	41	5.0	41	85	5	202	19	19	27	33	1.96
29431461--29431501	21	2.0	21	90	9	66	26	0	24	48	1.51
29432609--29432669	30	2.0	31	90	9	99	37	32	6	22	1.80
29437388--29437420	17	2.0	17	88	5	50	33	12	24	30	1.91
29437963--29438036	37	2.0	37	100	0	148	35	16	8	40	1.78
29440274--29440312	7	5.6	7	100	0	78	0	74	0	25	0.82
29447824--29447867	18	2.4	18	80	0	52	13	27	4	54	1.58
29448099--29448155	27	2.1	27	83	0	69	12	22	24	40	1.88
29448108--29448171	27	2.4	27	83	0	83	10	23	25	40	1.87
29456390--29456685	43	7.1	43	84	6	335	25	19	29	26	1.99
29456390--29456685	42	7.1	41	86	4	341	25	19	29	26	1.99
29456871--29456946	19	4.3	19	66	19	65	35	15	31	17	1.91
29459704--29459728	13	1.9	13	100	0	50	8	28	8	56	1.57
29460148--29460182	18	1.9	18	100	0	70	45	0	2	51	1.16
29463935--29463982	10	4.8	10	77	10	53	29	16	31	22	1.96
29463935--29463982	20	2.4	20	86	6	71	29	16	31	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29475831--29475895	33	1.9	35	87	6	98	12	0	38	49	1.41
29475946--29476216	93	2.9	93	81	7	323	38	3	15	42	1.64
29476249--29476666	126	3.3	126	89	3	639	32	18	20	27	1.96
29480343--29480385	18	2.4	18	88	0	59	44	9	27	18	1.80
29480436--29480519	30	2.8	30	79	0	78	7	10	46	35	1.66
29481040--29481128	7	12.7	7	97	0	169	56	14	0	29	1.39
29482301--29482346	11	4.2	11	78	18	51	43	0	32	23	1.54
29482307--29482349	10	4.0	10	82	14	50	46	0	30	23	1.52
29483800--29483829	15	1.9	16	93	6	53	80	0	0	20	0.72
29485100--29485244	78	1.9	78	85	2	202	42	16	26	13	1.86
29485602--29485727	43	3.0	41	82	11	139	25	22	19	32	1.97
29486697--29486721	9	2.8	9	100	0	50	88	0	0	12	0.53
29488409--29488473	29	2.3	28	83	2	76	38	21	10	29	1.87
29495274--29495300	13	2.1	13	100	0	54	14	14	0	70	1.17
29500721--29500758	16	2.3	17	95	4	69	42	15	7	34	1.76
29516691--29516768	21	3.7	21	70	19	54	66	1	23	8	1.27
29516705--29516756	15	3.8	13	73	16	52	73	1	21	3	1.10
29523968--29524037	25	2.8	25	88	0	113	25	28	21	24	1.99
29529487--29529551	32	2.0	32	96	0	121	13	16	30	38	1.88
29529487--29529539	16	3.3	16	70	19	56	13	15	32	39	1.85
29533601--29533639	20	2.0	19	85	5	51	46	17	5	30	1.70
29536272--29536340	20	3.5	20	71	15	61	31	10	28	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29542928--29542966	20	2.0	20	90	10	62	38	10	28	23	1.87
29548867--29549142	151	1.8	151	91	0	453	24	18	30	26	1.97
29562435--29562475	21	2.0	21	90	0	64	48	12	12	26	1.75
29563345--29563398	21	2.5	22	87	3	74	44	0	33	22	1.53
29563462--29563579	41	3.0	40	79	6	141	20	22	16	41	1.90
29564311--29564339	6	4.8	6	100	0	58	34	0	0	65	0.93
29564786--29564827	21	2.0	21	85	4	57	38	2	4	54	1.34
29564913--29564947	2	17.5	2	100	0	70	51	0	0	48	1.00
29565116--29565166	25	2.0	25	92	0	84	50	1	9	37	1.47
29565927--29565976	3	16.7	3	100	0	100	34	0	0	66	0.92
29567197--29567249	20	2.8	19	80	16	65	71	0	0	28	0.86
29567194--29567239	17	2.7	17	83	9	58	71	0	0	28	0.86
29567194--29567267	16	4.6	16	70	18	55	71	0	1	27	0.94
29567243--29567281	17	2.2	17	86	9	51	69	2	5	23	1.21
29568483--29568686	111	1.8	111	100	0	408	39	15	8	36	1.78
29575511--29575584	36	2.1	36	100	0	148	40	18	16	24	1.90
29595738--29595778	19	2.2	19	95	0	73	48	0	26	24	1.51
29597058--29597108	3	17.0	3	100	0	102	66	0	0	33	0.92
29600676--29600736	26	2.4	26	91	5	99	34	9	18	37	1.83
29601382--29601517	41	3.3	40	89	5	209	24	23	23	28	1.99
29602076--29602246	89	1.9	89	87	0	252	26	2	26	43	1.69
29602069--29602264	89	2.2	88	83	2	248	24	2	29	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29602233--29602301	28	2.4	29	80	9	79	14	0	44	40	1.45
29602875--29603309	154	2.9	148	88	7	655	38	16	13	31	1.87
29603329--29603374	21	2.2	21	88	7	67	26	50	0	23	1.50
29605631--29605663	17	1.9	17	100	0	66	18	0	30	51	1.46
29607008--29607226	43	5.1	42	78	6	201	21	18	28	31	1.97
29607342--29607384	22	2.0	22	90	0	68	41	25	20	11	1.86
29608156--29608181	13	2.0	13	100	0	52	38	0	7	53	1.30
29608557--29608623	32	2.1	32	97	0	125	40	13	14	31	1.85
29610797--29610840	3	14.7	3	100	0	88	68	0	0	31	0.90
29612845--29612971	43	3.0	42	80	14	170	33	25	18	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206