genome.fa.s2.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  204  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61736696--61736788	44	2.1	43	84	5	116	48	5	6	39	1.52
61737203--61737431	126	1.8	128	87	3	347	31	16	10	41	1.83
61744385--61744419	2	17.5	2	100	0	70	51	0	0	48	1.00
61748657--61748699	14	3.4	14	75	24	58	41	0	0	58	0.98
61757721--61757840	60	2.0	59	80	6	134	38	2	17	41	1.63
61762801--61762839	2	19.5	2	94	0	69	51	0	2	46	1.14
61766455--61766488	18	1.9	18	88	5	52	35	5	14	44	1.70
61769705--61769733	13	2.2	13	100	0	58	79	0	0	20	0.74
61774623--61774673	15	3.5	15	71	15	52	54	11	7	25	1.63
61777417--61777526	37	2.9	37	88	9	118	20	14	15	50	1.79
61777439--61777526	37	2.4	37	98	0	167	17	15	15	51	1.77
61781316--61781426	55	2.0	55	98	0	213	29	32	13	24	1.93
61782535--61782569	5	6.8	5	87	6	52	37	0	2	60	1.12
61782535--61782579	16	2.9	16	86	3	56	35	2	2	60	1.22
61787966--61788011	5	9.4	5	92	4	67	54	0	0	45	0.99
61787965--61788011	24	2.0	24	91	0	76	53	0	0	46	1.00
61788979--61789005	14	1.9	14	100	0	54	51	0	11	37	1.37
61790982--61791011	6	4.8	6	95	4	51	66	0	0	33	0.92
61791612--61791648	13	2.5	15	87	12	51	51	13	0	35	1.41
61797840--61797870	2	15.5	2	100	0	62	51	0	0	48	1.00
61798355--61798413	32	2.0	30	83	12	77	28	6	5	59	1.45
61799308--61799366	30	1.9	31	86	3	84	67	0	1	30	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61805607--61805769	87	1.9	86	92	1	272	36	20	6	35	1.80
61807281--61807320	18	2.2	19	86	4	55	32	0	0	67	0.91
61812999--61813058	29	2.1	28	84	3	75	36	11	10	41	1.75
61820024--61820063	4	10.0	4	94	0	71	47	25	0	27	1.52
61823125--61823149	12	2.1	12	100	0	50	8	56	20	16	1.65
61825313--61825354	22	1.9	22	85	0	57	40	0	0	59	0.97
61832538--61832571	11	3.0	11	91	4	50	38	0	0	61	0.96
61837689--61837726	19	2.0	19	94	0	67	26	28	5	39	1.78
61837693--61837734	19	2.2	19	86	0	57	30	23	4	40	1.75
61844678--61844717	14	2.8	16	78	21	52	55	5	0	40	1.22
61847534--61847584	27	1.9	27	88	4	77	54	9	5	29	1.56
61847701--61847753	27	2.0	27	88	0	79	39	20	5	33	1.76
61850988--61851033	18	2.7	17	83	9	58	21	6	19	52	1.69
61853324--61853456	31	4.4	30	68	16	78	38	12	5	44	1.64
61853348--61853419	30	2.4	31	81	6	76	41	11	6	40	1.67
61854894--61854919	6	4.3	6	100	0	52	34	0	15	50	1.45
61863031--61863066	3	12.0	3	93	0	63	33	30	0	36	1.58
61866971--61867031	20	3.0	20	85	4	77	44	6	4	44	1.51
61869182--61869223	16	2.6	16	92	0	66	42	7	2	47	1.43
61869197--61869258	23	2.8	23	80	4	65	46	1	1	50	1.20
61870873--61870936	26	2.5	26	75	10	67	46	0	0	53	1.00
61873911--61873936	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61875231--61875291	20	3.0	20	85	4	77	44	6	4	44	1.51
61875380--61875410	3	10.3	3	92	0	53	67	3	0	29	1.06
61876516--61876590	38	2.0	38	97	0	141	69	2	17	10	1.29
61880864--61880919	17	3.1	18	77	12	62	35	0	1	62	1.06
61880889--61880939	27	1.9	26	84	4	66	35	0	1	62	1.06
61884690--61884731	22	2.0	21	85	4	57	47	0	4	47	1.23
61889701--61889731	16	1.9	16	93	0	53	54	9	6	29	1.57
61892102--61892135	2	17.0	2	93	0	59	50	2	0	47	1.16
61892098--61892135	10	3.8	10	96	0	58	50	5	0	44	1.24
61893033--61893062	4	7.5	4	92	0	51	50	20	0	30	1.49
61893032--61893062	16	1.9	16	100	0	62	48	19	0	32	1.49
61898410--61898490	27	2.9	27	72	17	67	44	2	1	51	1.22
61906247--61906313	34	1.9	35	87	3	100	44	13	8	32	1.75
61911374--61911401	3	9.3	3	100	0	56	32	0	0	67	0.91
61921510--61921549	21	2.0	21	85	5	55	45	0	22	32	1.53
61922840--61922885	20	2.2	20	82	17	51	28	4	0	67	1.10
61922840--61922881	21	1.9	23	85	9	61	28	4	0	66	1.12
61933030--61933200	59	2.9	59	79	8	186	25	16	12	46	1.81
61933637--61933703	31	2.2	31	86	0	89	44	11	17	25	1.83
61933647--61933715	31	2.2	31	84	0	84	43	13	18	24	1.86
61937190--61937301	54	2.1	54	100	0	224	36	16	12	33	1.87
61937793--61937842	20	2.5	19	81	15	57	30	0	4	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61938008--61938049	22	1.9	22	85	9	59	28	0	2	69	1.01
61944772--61944915	33	4.3	33	69	13	105	29	25	15	29	1.96
61944755--61944983	101	2.3	101	93	0	386	30	24	15	29	1.96
61944791--61944983	33	5.7	33	69	7	93	29	26	15	29	1.96
61957480--61957533	27	2.0	27	100	0	108	37	29	7	25	1.83
61958869--61958919	26	2.0	26	100	0	102	29	23	11	35	1.90
61964781--61964833	20	2.7	20	85	11	65	60	7	0	32	1.25
61964780--61964838	19	3.0	20	80	11	61	59	6	0	33	1.24
61964840--61964878	19	2.0	19	85	5	51	51	5	0	43	1.24
61965680--61965802	4	31.0	4	74	21	84	70	0	29	0	0.87
61965680--61965868	18	10.5	18	70	16	117	68	0	31	0	0.90
61965679--61965832	38	3.8	40	82	16	183	70	0	29	0	0.88
61965732--61965868	45	3.2	44	82	11	169	68	0	31	0	0.90
61965682--61965868	83	2.3	82	85	10	247	68	0	31	0	0.89
61965680--61965837	14	10.9	14	71	16	108	70	0	29	0	0.87
61966233--61967094	285	3.0	286	94	0	1514	51	7	11	30	1.65
61967928--61968877	315	3.0	315	98	0	1810	23	20	24	32	1.98
61978126--61978171	22	2.1	22	87	0	65	50	19	6	23	1.71
61981710--61981767	30	1.9	30	83	16	75	29	12	1	56	1.45
61985550--61985962	210	2.0	206	84	5	546	42	16	12	28	1.85
61987038--61987213	56	3.1	57	83	4	203	42	17	17	22	1.89
61988011--61988058	17	2.8	17	81	12	62	25	0	4	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61994888--61994912	12	2.1	12	100	0	50	72	8	0	20	1.10
61998101--61998128	3	9.3	3	100	0	56	67	0	32	0	0.91
61998943--61999008	31	2.2	31	83	8	82	28	0	1	69	0.97
61998962--61999020	23	2.5	23	80	5	64	30	0	1	67	1.00
62002415--62002441	3	9.0	3	100	0	54	33	66	0	0	0.92
62007390--62007434	6	7.7	6	92	5	65	8	2	2	86	0.73
62012759--62012834	29	2.6	29	93	0	134	51	9	9	30	1.65
62014939--62015005	29	2.2	30	89	5	100	31	10	11	46	1.75
62015290--62015324	17	2.1	17	88	0	52	22	2	14	60	1.48
62018490--62018532	22	2.0	22	95	0	77	58	6	6	27	1.50
62031793--62032227	148	2.9	149	80	5	493	35	20	12	31	1.90
62044188--62044229	16	2.8	15	78	7	50	47	21	11	19	1.81
62049222--62049541	139	2.3	139	86	5	425	38	21	17	22	1.93
62054264--62054310	4	11.8	4	95	0	85	53	23	0	23	1.47
62059584--62059627	19	2.3	19	88	0	70	36	4	9	50	1.55
62063280--62063509	115	2.0	114	90	2	363	20	8	24	46	1.79
62063148--62063664	270	1.9	270	89	2	797	22	9	23	45	1.81
62063394--62063890	155	3.2	155	93	2	804	23	11	20	44	1.83
62069196--62069240	2	22.0	2	81	4	54	42	0	2	55	1.12
62077627--62077658	4	7.8	4	93	6	55	53	0	0	46	1.00
62077626--62077658	17	1.9	17	100	0	66	54	0	0	45	0.99
62080076--62080108	17	1.9	17	93	0	57	45	6	3	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62080017--62080153	61	2.2	60	80	11	152	50	7	5	36	1.54
62083276--62083324	24	2.0	24	88	0	71	22	6	4	67	1.30
62101437--62101477	18	2.2	19	83	12	50	21	4	9	63	1.44
62104215--62104300	30	2.9	29	70	5	73	25	13	11	48	1.77
62106097--62106121	13	1.9	13	100	0	50	72	0	0	28	0.86
62110780--62110991	116	1.8	118	87	5	322	25	11	16	46	1.81
62112765--62112831	20	3.3	20	74	13	66	62	2	0	34	1.10
62113851--62114078	112	2.0	114	89	2	352	37	21	13	26	1.91
62119451--62119480	13	2.3	13	94	0	51	13	6	20	60	1.55
62123839--62123881	20	2.2	19	83	4	50	55	6	2	34	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206