genome.fa.s2.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  119  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35449553--35449640	30	2.9	30	81	0	104	23	23	22	29	1.99
35458624--35458671	8	6.1	8	77	22	57	35	4	0	60	1.16
35466411--35466457	16	2.9	16	81	12	60	31	14	10	42	1.80
35466432--35466480	23	2.1	23	92	0	80	28	14	12	44	1.81
35466659--35466685	13	2.1	13	100	0	54	33	44	7	14	1.73
35467390--35467531	51	2.9	49	88	2	194	30	23	16	28	1.97
35481253--35481294	10	4.1	10	77	17	50	2	23	2	71	1.10
35481248--35481292	21	2.3	20	81	11	58	2	24	2	71	1.09
35482946--35483083	65	2.1	65	94	1	240	28	40	16	13	1.87
35497704--35497781	32	2.5	32	85	6	97	20	17	32	29	1.96
35499410--35499451	20	2.0	21	82	13	52	28	9	9	52	1.65
35501194--35501338	50	2.9	49	80	5	141	22	25	22	30	1.99
35506587--35506632	19	2.4	19	85	10	67	43	0	4	52	1.21
35512529--35512675	51	2.9	51	95	0	267	39	3	26	30	1.73
35518240--35518288	25	2.0	25	88	11	75	48	2	2	46	1.25
35518976--35519018	3	14.3	3	100	0	86	32	0	0	67	0.91
35519481--35519528	24	2.0	24	100	0	96	41	25	8	25	1.83
35519945--35519973	5	5.8	5	100	0	58	0	17	0	82	0.66
35522222--35522709	246	2.0	246	97	0	922	28	17	21	32	1.96
35525085--35525196	44	2.6	43	90	4	172	50	2	24	22	1.61
35525085--35525214	44	3.0	42	83	11	165	47	3	25	23	1.66
35529337--35529375	19	2.1	19	90	0	60	15	33	25	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35536105--35536156	21	2.5	21	78	12	61	17	5	5	71	1.26
35547627--35547669	17	2.5	17	84	0	59	2	27	0	69	1.00
35548371--35548406	18	2.0	18	94	0	63	47	11	11	30	1.74
35563916--35563954	20	2.0	20	90	10	62	15	23	5	56	1.59
35564157--35564398	50	4.7	50	78	3	189	24	27	20	27	1.99
35566371--35566405	13	2.9	12	88	12	54	42	17	14	25	1.86
35566477--35566526	25	2.1	24	85	10	68	30	10	20	40	1.85
35568205--35568244	19	2.1	19	86	9	55	47	12	5	35	1.63
35568827--35568882	27	2.1	27	93	0	94	33	25	23	17	1.96
35570814--35571022	27	7.8	27	78	7	122	29	8	20	41	1.82
35570817--35571023	54	3.9	54	76	7	179	28	8	21	41	1.82
35570817--35570968	53	2.8	53	82	7	164	26	9	22	41	1.85
35570953--35571037	27	3.2	27	93	1	136	35	5	15	43	1.71
35574069--35574114	22	2.1	22	100	0	92	30	30	4	34	1.77
35575290--35575345	27	2.1	27	90	6	87	33	23	23	19	1.97
35575832--35576019	81	2.3	81	81	3	218	31	9	20	38	1.85
35575810--35576027	27	8.1	27	76	4	179	32	11	19	37	1.87
35587408--35587461	22	2.5	22	93	0	90	11	20	27	40	1.86
35589487--35589890	41	9.9	41	84	3	438	21	21	28	27	1.99
35589959--35590161	21	9.6	21	65	17	64	21	0	33	43	1.57
35590003--35590056	22	2.5	21	78	3	54	22	0	31	46	1.52
35590019--35590063	7	6.3	7	86	2	54	20	0	28	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35590024--35590162	7	19.9	7	74	16	56	19	0	37	43	1.51
35591664--35591766	29	3.5	29	67	19	77	12	14	6	66	1.44
35594120--35594205	43	2.0	43	88	0	127	33	9	10	46	1.70
35594483--35594526	22	1.9	22	86	9	61	59	4	0	36	1.18
35594545--35594741	43	4.6	43	86	1	236	23	16	25	34	1.95
35596968--35597004	2	18.5	2	100	0	74	0	0	48	51	1.00
35598279--35598313	3	11.7	3	100	0	70	65	0	0	34	0.93
35603358--35603422	13	5.1	13	78	10	80	36	29	6	27	1.81
35603358--35603422	25	2.5	26	83	11	98	36	29	6	27	1.81
35607819--35607891	10	7.2	10	81	6	67	63	0	0	36	0.95
35607817--35607868	22	2.3	23	83	9	72	59	0	0	40	0.97
35607832--35607868	11	3.4	11	100	0	74	59	0	0	40	0.97
35609066--35609104	15	2.6	15	91	0	60	33	0	0	66	0.92
35609188--35609228	21	2.0	21	85	0	55	31	4	4	58	1.40
35609385--35609432	16	3.0	16	81	0	51	37	6	6	50	1.53
35609465--35609505	2	20.5	2	100	0	82	48	0	0	51	1.00
35621831--35621975	50	2.9	49	72	8	139	30	22	22	25	1.99
35621837--35622022	100	1.9	100	81	0	228	30	22	21	25	1.99
35621670--35622239	267	2.1	267	88	0	827	27	20	25	27	1.99
35622262--35622591	126	2.6	127	87	4	477	31	20	21	26	1.98
35623876--35623916	15	2.7	15	88	0	55	36	0	0	63	0.95
35624000--35624040	21	2.0	21	85	0	55	31	4	4	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35624197--35624244	16	3.0	16	81	0	51	37	6	6	50	1.53
35631795--35631881	45	2.0	43	81	4	102	18	14	14	51	1.76
35635962--35636062	40	2.5	40	93	0	175	32	23	16	26	1.96
35636963--35637137	89	2.0	90	96	1	325	41	16	9	33	1.79
35642929--35643024	40	2.4	40	100	0	192	31	22	18	27	1.97
35643630--35643672	2	22.0	2	95	4	79	48	0	0	51	1.00
35645983--35646225	51	4.8	50	77	6	240	30	26	17	25	1.97
35645975--35646221	101	2.5	100	83	2	298	30	25	17	25	1.98
35650851--35650880	11	2.7	11	94	0	51	40	6	3	50	1.45
35651421--35651445	4	6.2	4	100	0	50	24	0	0	76	0.80
35652053--35652156	52	2.0	52	100	0	208	44	3	15	36	1.65
35652429--35652569	44	3.2	44	86	3	185	39	23	4	32	1.76
35653308--35653404	44	2.2	44	80	3	108	27	26	17	27	1.98
35662239--35662269	16	1.9	16	100	0	62	6	0	58	35	1.24
35662719--35662825	53	2.0	53	100	0	214	22	7	39	30	1.82
35672611--35672640	2	15.0	2	100	0	60	50	0	0	50	1.00
35683554--35683613	24	2.5	24	84	10	79	68	0	1	30	0.99
35689223--35689270	19	2.5	19	96	0	87	60	4	18	16	1.51
35689364--35689429	6	11.0	6	91	0	87	60	1	22	15	1.43
35689364--35689428	24	2.7	24	92	0	103	60	1	23	15	1.44
35689574--35689635	26	2.4	26	88	0	88	40	11	14	33	1.82
35702467--35702496	16	1.9	16	93	6	53	50	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710542--35710585	19	2.5	17	81	7	52	9	20	47	22	1.78
35718446--35718478	17	1.9	17	93	0	57	15	6	15	63	1.49
35722465--35722491	11	2.5	11	100	0	54	25	7	7	59	1.51
35746473--35746527	25	2.2	25	81	12	60	49	5	1	43	1.36
35751349--35751374	12	2.2	12	100	0	52	73	7	0	19	1.07
35755238--35755295	21	2.6	24	81	10	61	20	3	3	72	1.14
35755238--35755325	23	3.7	24	72	15	76	20	4	2	72	1.13
35755241--35755350	12	9.2	12	68	15	68	22	4	2	70	1.19
35755280--35755349	32	2.2	33	84	2	88	20	4	2	72	1.14
35755349--35755378	15	1.9	16	93	6	53	13	3	16	66	1.37
35756856--35756893	6	6.2	6	85	14	51	15	2	2	78	0.97
35756856--35756893	14	3.1	12	82	17	51	15	2	2	78	0.97
35758610--35758651	19	2.2	19	100	0	84	21	0	9	69	1.17
35758616--35758660	19	2.4	19	88	3	65	20	2	11	66	1.33
35761157--35761277	47	2.6	46	85	12	158	40	5	14	38	1.70
35767661--35767722	30	2.0	31	90	3	99	22	48	0	29	1.51
35773500--35773559	31	2.0	31	86	3	86	46	10	3	40	1.54
35784634--35784659	12	2.2	12	100	0	52	42	0	34	23	1.54
35793100--35793266	42	4.0	42	85	2	196	19	17	25	37	1.93
35793821--35793859	20	2.0	20	90	10	62	5	12	0	82	0.83
35794291--35794354	23	2.9	21	73	13	56	42	0	10	46	1.39
35794024--35794355	145	2.2	150	85	6	435	38	5	8	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35794331--35794386	27	2.0	27	89	3	85	44	1	10	42	1.49
35795031--35795099	10	7.1	9	77	22	61	21	4	1	72	1.10
35795047--35795095	16	3.2	15	83	13	57	20	4	2	73	1.10
35799655--35799795	22	6.4	22	89	0	201	26	26	14	33	1.94
35810156--35810186	6	5.2	6	100	0	62	19	0	0	80	0.71
35810470--35810494	5	5.0	5	100	0	50	60	0	0	40	0.97
35815091--35815500	86	4.8	86	83	5	435	43	12	13	30	1.81
35815962--35816014	20	2.7	20	82	2	54	54	7	7	30	1.56
35816720--35816760	20	2.0	20	85	9	55	31	4	7	56	1.48
35822133--35822184	28	1.9	27	88	7	79	36	17	9	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206