genome.fa.s2.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  125  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37627838--37628221	129	3.0	129	94	0	669	29	21	17	30	1.96
37628017--37628394	175	2.2	174	89	1	562	29	22	18	29	1.97
37628055--37628344	85	3.4	82	72	11	249	30	22	17	29	1.97
37628629--37628740	57	1.9	58	89	5	174	24	26	20	28	1.99
37628681--37629158	88	5.4	88	93	0	796	24	25	22	27	2.00
37628752--37629154	44	9.2	43	67	16	193	24	24	23	27	2.00
37630563--37630612	3	16.7	3	95	0	91	32	0	2	66	1.03
37635471--37635510	2	20.0	2	100	0	80	50	0	50	0	1.00
37642997--37643069	23	3.2	22	88	7	101	32	26	17	23	1.97
37643298--37643336	18	2.2	17	86	13	53	46	20	0	33	1.51
37647372--37647635	130	2.0	130	88	2	388	27	10	26	35	1.89
37654798--37654865	30	2.2	31	84	2	84	26	17	7	48	1.73
37656566--37656943	50	7.6	50	86	1	483	21	29	21	27	1.98
37659727--37659785	30	1.9	30	86	3	82	28	22	1	47	1.61
37659727--37659795	30	2.3	31	82	7	79	28	20	4	46	1.70
37662114--37662157	20	2.2	20	83	0	52	36	22	29	11	1.89
37662130--37662219	20	4.5	20	70	5	65	34	16	31	17	1.93
37662175--37662239	20	3.2	20	66	12	53	35	15	33	15	1.89
37662154--37662242	40	2.2	40	92	4	144	34	16	31	16	1.92
37670972--37671092	50	2.4	50	80	5	136	21	27	22	28	1.99
37675104--37675136	2	16.5	2	100	0	66	48	0	0	51	1.00
37680816--37680848	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37690500--37690564	33	2.0	32	84	3	85	41	15	23	20	1.89
37690494--37690569	33	2.4	32	80	10	84	42	15	22	19	1.89
37695330--37695359	6	5.2	6	92	8	53	86	0	13	0	0.57
37695330--37695359	11	2.6	12	89	10	53	86	0	13	0	0.57
37698444--37698477	17	2.0	17	100	0	68	23	11	23	41	1.87
37702463--37702605	76	1.9	78	86	2	209	37	2	18	41	1.66
37703030--37703150	41	3.0	40	79	11	122	28	19	25	26	1.99
37703337--37703361	13	1.9	13	100	0	50	32	8	20	40	1.81
37707453--37707532	29	2.8	28	85	9	99	37	12	15	35	1.85
37710098--37710130	14	2.4	14	85	5	50	42	27	21	9	1.83
37714223--37714279	30	1.9	30	92	0	96	35	7	12	45	1.69
37718357--37718412	29	1.9	29	92	0	94	35	3	10	50	1.55
37719804--37720116	125	2.5	125	92	2	504	31	18	20	29	1.96
37721334--37721431	51	1.9	50	87	8	144	47	2	24	25	1.62
37721588--37721666	40	2.0	40	94	0	140	22	32	26	17	1.96
37722205--37722251	20	2.3	20	76	23	53	34	2	4	59	1.29
37722729--37723209	232	2.1	232	85	5	632	39	9	6	44	1.61
37723079--37723116	17	2.2	18	90	4	60	50	0	7	42	1.31
37723029--37723598	248	2.3	243	80	6	626	39	8	7	45	1.62
37727174--37727247	37	2.0	37	97	0	139	24	25	4	45	1.70
37733904--37734110	29	7.2	29	74	9	154	37	13	25	23	1.91
37733911--37734072	55	2.9	55	78	8	146	38	12	25	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37733898--37734109	59	3.7	58	76	6	182	37	13	25	23	1.91
37735744--37735803	23	2.6	23	78	0	66	35	8	23	33	1.85
37752761--37752800	16	2.6	15	80	4	53	25	5	5	65	1.34
37754967--37755036	6	11.7	6	71	0	59	71	2	18	7	1.22
37754967--37755041	24	3.1	24	78	0	69	69	4	18	8	1.30
37754967--37755021	18	3.1	18	81	0	65	72	3	16	7	1.21
37754969--37755122	30	5.4	29	73	19	94	67	1	19	11	1.30
37755071--37755109	18	2.3	17	86	8	53	71	0	17	10	1.12
37760845--37762799	684	2.8	685	86	3	2759	31	16	17	34	1.93
37764630--37764686	16	3.7	15	75	9	53	21	1	7	70	1.20
37765277--37765315	18	2.2	18	86	9	53	53	2	38	5	1.37
37767546--37767645	33	3.2	32	73	13	91	30	24	22	24	1.99
37767574--37767635	28	2.2	28	88	2	99	30	24	22	22	1.99
37767933--37768074	27	5.3	27	86	0	203	18	18	21	41	1.90
37775495--37775574	42	2.0	40	82	5	97	27	17	2	52	1.57
37775868--37775911	21	2.1	21	83	8	54	47	15	9	27	1.76
37782712--37782928	52	4.2	52	83	7	251	52	14	7	24	1.68
37783273--37783347	38	2.0	38	100	0	150	41	26	8	24	1.82
37783453--37783505	27	1.9	28	81	11	65	5	30	1	62	1.29
37783491--37783522	17	1.9	17	93	6	57	3	18	0	78	0.89
37783469--37783546	24	3.4	23	77	8	79	5	21	2	70	1.19
37783521--37783564	21	2.3	20	82	17	58	6	25	4	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37789254--37789279	8	3.2	8	100	0	52	76	0	0	23	0.78
37794254--37794422	78	2.2	78	87	0	239	34	13	20	31	1.92
37798946--37798977	11	3.0	11	95	4	57	75	9	6	9	1.20
37798947--37798978	10	3.1	10	95	4	55	75	9	3	12	1.16
37800166--37800251	18	4.6	18	74	7	73	72	3	18	5	1.20
37800162--37800251	6	14.7	6	71	7	65	72	3	18	5	1.19
37800212--37800269	27	2.1	27	87	12	84	70	0	18	10	1.15
37800213--37800269	14	4.2	13	79	16	62	71	0	17	10	1.12
37800171--37800269	42	2.4	42	80	11	105	70	2	19	8	1.22
37800266--37800328	33	1.9	33	87	12	94	57	4	25	12	1.55
37805683--37805729	24	1.9	24	86	4	67	36	0	38	25	1.56
37806799--37807373	27	21.4	26	83	8	643	43	21	16	18	1.88
37806799--37807371	81	7.1	81	84	2	751	43	21	16	18	1.88
37806799--37807371	54	10.6	54	87	0	763	43	21	16	18	1.88
37807612--37807685	26	2.8	26	85	0	103	22	24	21	31	1.99
37807787--37807960	28	6.2	28	92	2	287	22	24	22	29	1.99
37809422--37809457	8	4.5	8	100	0	72	33	0	0	66	0.92
37810167--37810223	30	1.9	29	86	10	80	61	7	3	28	1.39
37810456--37810493	12	3.4	11	86	13	51	81	7	0	10	0.87
37810461--37810502	13	3.2	13	83	16	52	76	9	0	14	1.02
37812114--37813463	199	6.8	199	92	0	2191	23	19	23	33	1.97
37812114--37813463	299	4.5	299	92	0	2184	23	19	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37812114--37813465	100	13.6	100	91	0	2167	23	19	23	33	1.97
37815066--37815103	7	5.4	7	81	12	51	13	15	0	71	1.16
37816098--37816330	45	5.2	45	96	0	412	25	20	15	38	1.92
37817217--37817288	34	2.1	34	82	5	83	8	8	8	75	1.21
37817225--37817288	34	1.9	34	87	3	94	7	6	7	78	1.10
37817229--37817284	25	2.1	27	87	6	80	7	7	7	78	1.09
37822039--37822095	30	1.9	29	86	10	80	61	7	3	28	1.39
37825037--37825140	51	2.0	51	100	0	208	41	23	7	27	1.81
37827144--37827193	10	5.0	10	78	9	57	30	14	28	28	1.95
37827147--37827193	20	2.3	20	89	7	69	27	14	29	27	1.96
37829110--37829190	12	6.8	12	69	17	53	12	24	1	61	1.38
37829125--37829180	18	3.0	20	68	26	59	10	26	0	62	1.28
37829220--37829266	15	3.1	15	84	9	60	12	17	0	70	1.17
37830306--37830353	16	3.1	15	74	11	51	6	20	2	70	1.19
37831895--37831944	10	5.0	10	78	9	57	30	14	28	28	1.95
37831898--37831944	20	2.3	20	89	7	69	27	14	29	27	1.96
37833299--37833337	20	2.0	20	90	10	62	15	23	2	58	1.49
37833603--37833719	50	2.3	50	82	0	126	23	29	21	26	1.99
37835946--37836025	26	3.1	26	77	0	79	40	21	20	18	1.92
37836206--37836480	54	5.1	53	82	7	308	21	14	18	45	1.85
37836206--37836480	27	10.2	26	81	9	270	21	14	18	45	1.85
37851676--37851762	27	3.1	27	80	9	97	11	18	1	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37851697--37851762	29	2.4	27	87	10	89	12	18	0	69	1.18
37851697--37851852	12	13.6	12	68	18	55	10	18	2	68	1.30
37851694--37851826	18	7.3	18	73	9	81	9	18	3	69	1.27
37851694--37851830	6	22.7	6	68	5	71	8	18	2	70	1.26
37852896--37852953	20	2.8	21	78	5	64	8	13	3	74	1.19
37860610--37860757	72	2.0	73	83	6	185	26	15	28	29	1.96
37860610--37860780	72	2.4	73	77	8	172	28	15	28	28	1.96
37864997--37865139	69	2.1	69	98	0	277	27	30	11	29	1.92
37873115--37873850	368	2.0	368	96	0	1364	24	22	19	33	1.97
37878689--37878755	22	3.0	22	93	0	107	34	14	25	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206