genome.fa.s2.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  123  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36814682--36814740	29	2.0	31	83	6	77	33	15	22	28	1.94
36818427--36818465	10	3.8	10	86	3	51	79	2	15	2	0.95
36818427--36818465	20	1.9	21	89	5	62	79	2	15	2	0.95
36828288--36828342	15	3.8	14	79	15	67	72	1	21	3	1.09
36833568--36833695	64	2.0	64	100	0	256	28	20	14	37	1.91
36837550--36837681	50	2.6	51	81	3	158	38	12	15	33	1.85
36844233--36844305	29	2.5	29	95	0	128	31	9	13	45	1.76
36848639--36848711	37	1.9	37	84	13	96	32	23	1	42	1.63
36848787--36848876	45	2.0	45	93	0	153	33	24	17	24	1.96
36848889--36849021	50	2.6	52	86	5	200	31	27	15	25	1.96
36857781--36857843	21	3.0	21	85	2	81	34	31	3	30	1.74
36858154--36858228	18	4.3	16	67	17	51	73	6	6	13	1.24
36858190--36858229	16	2.4	16	87	4	62	67	2	10	20	1.31
36860449--36860503	19	2.7	19	83	8	65	76	1	14	7	1.08
36864683--36864745	21	3.0	21	85	2	81	34	31	3	30	1.74
36865722--36865853	50	2.6	51	86	3	194	38	12	15	33	1.85
36866226--36866293	33	2.1	33	88	5	102	25	27	23	23	2.00
36878930--36879030	52	1.9	52	95	0	184	26	18	21	32	1.97
36884553--36884577	8	3.1	8	100	0	50	12	0	0	88	0.53
36885657--36885757	52	1.9	52	93	0	175	26	17	21	33	1.96
36895892--36895916	7	3.6	7	100	0	50	0	12	12	76	1.04
36898221--36898250	13	2.2	14	94	5	53	33	16	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36904349--36904832	50	9.6	50	84	4	481	23	29	19	26	1.98
36904753--36904855	48	2.1	48	81	0	125	27	28	20	24	1.99
36906718--36906759	17	2.5	17	92	0	66	30	9	7	52	1.61
36907889--36907941	23	2.3	23	93	0	88	26	9	22	41	1.84
36912817--36912849	9	3.8	9	88	8	50	54	3	0	42	1.15
36919166--36919227	19	3.1	20	81	4	72	66	1	24	8	1.28
36919169--36919222	20	2.7	20	83	8	74	66	1	22	9	1.30
36927639--36927872	51	4.6	52	80	8	266	26	17	25	29	1.97
36927639--36927874	101	2.3	100	82	6	271	26	17	25	30	1.97
36933921--36933971	27	1.9	27	84	4	68	27	25	15	31	1.96
36937235--36937305	22	3.2	22	78	11	74	36	18	28	16	1.93
36951402--36951503	44	2.2	44	79	8	107	31	10	12	45	1.77
36954828--36954864	20	1.9	20	88	5	58	72	0	21	5	1.04
36957972--36958075	44	2.3	44	80	8	111	31	10	13	44	1.78
36959907--36960043	50	2.8	49	91	3	211	25	21	33	18	1.97
36960011--36960131	36	3.1	36	77	22	143	24	21	33	20	1.97
36960047--36960217	47	3.6	47	89	2	245	26	19	30	22	1.98
36959961--36960131	83	2.0	85	93	3	292	25	21	33	19	1.97
36971441--36971490	21	2.4	21	87	9	68	22	20	26	32	1.98
36971454--36971493	21	1.9	21	100	0	80	22	22	25	30	1.99
36974346--36974399	21	2.7	21	82	5	58	33	27	24	14	1.94
36974360--36974421	21	3.0	21	83	4	72	32	25	30	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36979188--36979235	16	3.1	15	77	19	53	2	14	6	77	1.06
36979265--36979302	10	3.7	11	83	16	55	52	0	0	47	1.00
36979262--36979302	15	2.7	16	85	11	59	51	0	0	48	1.00
36979396--36979433	20	1.9	20	100	0	76	15	15	5	63	1.48
36979282--36979570	148	2.0	148	97	0	551	38	15	6	40	1.72
36980561--36980615	25	2.2	25	80	9	67	50	5	1	41	1.36
36980563--36980610	25	1.9	25	87	8	71	47	6	2	43	1.40
36983094--36983160	30	2.2	30	83	2	80	32	2	4	59	1.32
36983319--36983403	38	2.2	38	93	0	143	57	8	17	16	1.62
36987291--36987406	39	2.9	39	83	2	151	19	28	17	34	1.95
36992720--36992842	50	2.4	50	83	5	158	34	17	11	37	1.85
36998369--36998441	35	2.1	35	94	0	128	46	9	6	36	1.63
37000257--37000363	50	2.1	50	80	0	124	26	22	31	19	1.98
37000654--37000692	20	2.0	20	90	10	62	56	5	23	15	1.59
37025782--37025852	26	2.8	25	89	4	97	25	21	29	23	1.99
37026982--37027025	10	4.4	10	79	0	52	22	27	13	36	1.92
37048469--37048515	20	2.3	20	100	0	94	36	8	21	34	1.84
37049398--37049425	14	2.0	14	100	0	56	28	0	21	50	1.49
37049558--37049627	25	2.8	25	76	8	70	28	27	18	25	1.98
37054252--37054328	39	2.0	39	92	0	127	49	28	3	18	1.65
37059438--37059482	23	2.0	23	86	8	65	42	2	15	40	1.59
37060742--37061503	114	6.7	114	82	3	906	34	15	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37060647--37061503	228	3.8	227	89	1	1186	33	16	22	27	1.95
37061808--37061878	14	5.1	14	81	6	63	8	0	45	46	1.33
37061816--37061875	22	2.9	21	87	5	86	6	0	45	48	1.29
37061816--37061875	7	8.6	7	76	7	50	6	0	45	48	1.29
37062411--37062437	12	2.2	12	100	0	54	59	0	0	40	0.98
37065696--37065766	21	3.4	21	88	0	106	32	19	45	2	1.65
37067835--37068004	48	3.5	48	84	0	196	27	21	27	24	1.99
37076020--37076067	21	2.3	22	85	10	73	20	20	14	43	1.87
37076030--37076071	21	2.0	21	100	0	84	19	19	14	47	1.82
37081669--37081719	10	5.3	10	80	4	52	29	0	1	68	1.00
37081669--37081710	9	4.6	9	84	3	57	30	0	0	69	0.89
37081667--37081719	18	2.9	19	81	13	67	32	0	1	66	1.03
37083617--37083694	38	2.1	38	100	0	156	23	17	5	53	1.63
37084976--37085026	18	2.8	18	74	14	59	62	0	1	35	1.06
37084979--37085083	46	2.3	45	80	12	108	60	0	3	35	1.22
37085059--37085089	16	1.9	16	93	0	53	67	3	6	22	1.28
37085336--37085402	19	3.7	18	75	16	59	34	1	1	62	1.13
37087159--37087237	39	2.0	39	97	0	149	29	10	13	46	1.76
37087468--37087560	48	1.9	49	91	2	152	22	15	20	41	1.89
37092326--37092568	50	4.8	50	75	4	238	25	16	27	31	1.96
37092326--37092560	51	4.7	50	78	5	240	25	16	27	31	1.96
37092326--37092568	101	2.4	100	83	2	308	25	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37093985--37094037	21	2.5	21	96	0	97	13	9	22	54	1.67
37095809--37095839	14	2.2	14	94	0	53	38	9	19	32	1.84
37098419--37098476	26	2.2	26	96	0	107	34	12	10	43	1.76
37098814--37098853	20	2.0	20	90	0	62	50	12	10	27	1.72
37098837--37098876	14	2.9	14	84	0	53	42	17	7	32	1.77
37102440--37102566	43	2.9	43	71	17	118	29	29	18	22	1.98
37104152--37104217	25	2.6	25	80	4	80	30	15	22	31	1.95
37110602--37110634	11	2.9	12	86	13	52	33	0	0	66	0.92
37110758--37110820	30	2.1	30	96	0	117	57	15	3	23	1.53
37110850--37110892	22	2.0	22	90	0	68	55	6	13	23	1.62
37112124--37112204	28	2.8	27	78	10	81	56	0	6	37	1.24
37112225--37112270	23	2.0	23	83	8	58	39	2	0	58	1.10
37114155--37114184	12	2.6	11	90	10	51	73	6	0	20	1.05
37114206--37114248	22	2.0	22	85	0	59	55	6	13	23	1.62
37119115--37119208	45	2.1	45	93	0	161	30	24	19	25	1.98
37119216--37119396	51	3.6	49	79	8	186	31	27	17	23	1.97
37119211--37119398	101	1.9	101	87	3	279	30	27	17	23	1.97
37122268--37122436	84	2.0	84	83	0	212	35	17	15	31	1.91
37122630--37122671	20	2.0	21	95	4	77	30	19	28	21	1.97
37123677--37123720	23	1.9	23	85	0	61	13	18	25	43	1.86
37125224--37125604	32	11.9	32	82	1	440	30	10	17	40	1.84
37125224--37125604	96	4.0	96	85	1	521	30	10	17	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37125224--37125604	64	6.0	64	89	1	512	30	10	17	40	1.84
37125742--37125856	43	2.7	43	90	0	176	31	14	29	24	1.95
37129622--37129667	23	2.0	23	91	8	76	65	4	4	26	1.30
37131390--37131696	44	7.0	44	92	0	497	24	27	18	29	1.98
37132916--37132956	19	2.2	18	86	4	55	12	14	0	73	1.11
37132941--37133067	62	2.0	64	82	8	154	13	25	11	50	1.74
37138084--37138117	16	2.1	16	94	0	59	2	17	2	76	1.04
37143979--37144012	11	3.2	11	87	4	52	70	17	0	11	1.16
37144352--37144397	23	2.0	23	91	8	76	65	4	4	26	1.30
37153808--37153864	25	2.3	25	87	0	78	28	17	8	45	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206