genome.fa.s2.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  142  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43498028--43498061	17	2.0	17	100	0	68	41	11	11	35	1.78
43511642--43511761	25	4.8	25	84	0	159	21	25	17	35	1.95
43511642--43511761	50	2.4	50	97	0	222	21	25	17	35	1.95
43514029--43514077	20	2.7	18	77	22	57	51	4	2	42	1.32
43514042--43514124	36	2.2	36	83	10	105	53	3	3	39	1.36
43514537--43514576	19	2.1	19	86	9	55	32	2	5	60	1.32
43515710--43515740	16	1.9	16	93	0	53	70	9	9	9	1.33
43519870--43519918	19	2.6	19	84	9	57	32	2	2	63	1.17
43520326--43520381	29	1.9	29	81	0	67	33	0	10	55	1.35
43523159--43523276	42	2.8	43	81	6	127	19	16	26	37	1.93
43523159--43523350	41	4.7	41	75	10	128	19	16	26	38	1.92
43523179--43523337	83	1.9	81	81	7	187	19	16	24	38	1.92
43523752--43523784	2	16.5	2	93	0	57	45	0	3	51	1.16
43524940--43524969	15	2.0	15	100	0	60	33	20	20	26	1.97
43526079--43526119	13	3.2	13	83	13	57	34	4	9	51	1.56
43527818--43527925	9	12.2	9	71	14	73	48	17	3	30	1.65
43527826--43527863	20	1.9	19	94	5	67	50	18	0	31	1.47
43527815--43527907	25	4.0	23	78	14	77	49	17	4	29	1.65
43527824--43527934	16	6.4	17	70	14	66	49	18	2	29	1.61
43527926--43527964	18	2.2	18	95	0	69	48	20	5	25	1.70
43529913--43529957	23	2.0	23	95	0	81	42	20	22	15	1.89
43530835--43530881	19	2.5	19	85	0	58	25	0	14	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43534023--43534071	17	2.9	17	84	0	71	32	20	20	26	1.97
43534024--43534077	17	3.2	17	81	0	54	35	18	20	25	1.95
43534866--43535191	43	7.6	43	88	2	390	28	32	16	22	1.96
43535328--43535395	34	2.0	35	82	8	86	55	2	1	39	1.24
43539061--43539253	89	2.3	87	84	6	243	44	30	2	23	1.65
43539272--43539306	7	5.0	7	96	0	61	28	54	0	17	1.43
43539776--43539968	41	4.7	41	84	0	233	31	22	19	27	1.98
43539778--43539968	82	2.3	82	87	0	274	31	21	18	27	1.97
43550394--43550470	28	2.7	28	83	2	100	25	19	12	41	1.87
43550960--43551029	20	3.5	19	77	12	77	42	25	17	14	1.86
43550941--43551016	21	3.7	21	77	10	84	43	25	15	15	1.86
43550925--43551029	41	2.6	41	85	0	147	41	25	18	14	1.88
43552572--43552780	43	4.9	43	80	5	212	30	24	16	28	1.96
43552572--43552780	86	2.5	85	81	3	242	30	24	16	28	1.96
43559832--43559885	27	2.0	27	85	7	74	38	3	0	57	1.17
43559842--43559927	43	2.1	42	82	10	106	34	8	1	55	1.37
43563388--43563583	27	7.3	27	80	7	202	44	18	15	21	1.86
43563388--43563583	54	3.6	54	84	2	252	44	18	15	21	1.86
43565986--43566046	25	2.4	25	83	5	79	37	3	0	59	1.14
43580056--43580153	25	4.0	24	74	11	90	30	22	23	23	1.99
43582910--43582941	12	2.6	13	85	14	50	56	6	0	37	1.25
43587006--43587042	17	2.2	17	95	0	65	16	8	40	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43593150--43593211	31	2.0	31	87	6	90	40	14	6	38	1.72
43600428--43600567	69	2.0	69	82	5	167	35	12	14	37	1.84
43601998--43602032	18	1.9	18	88	11	54	22	2	28	45	1.67
43602340--43602495	27	5.8	27	77	3	143	35	11	22	30	1.90
43602340--43602495	54	2.9	54	80	0	177	35	11	22	30	1.90
43603625--43603710	43	2.0	43	86	4	120	51	1	22	25	1.55
43604600--43604638	17	2.3	17	90	0	69	33	17	5	43	1.72
43605670--43605771	36	2.8	36	82	2	134	29	15	14	40	1.87
43619367--43619415	18	2.6	19	78	18	57	22	2	2	73	1.04
43619366--43619415	22	2.3	22	83	10	66	22	2	2	74	1.03
43619920--43619960	18	2.3	18	95	0	73	19	29	14	36	1.92
43626489--43626524	18	2.0	18	100	0	72	16	27	16	38	1.90
43630622--43630665	19	2.2	19	84	8	52	50	2	22	25	1.61
43645785--43645828	22	2.0	22	86	0	61	38	2	0	59	1.10
43647298--43647353	28	2.0	28	96	0	103	26	10	7	55	1.60
43649704--43649745	20	2.1	20	100	0	84	35	19	4	40	1.72
43658602--43658730	42	3.1	41	80	1	123	43	23	17	16	1.87
43658635--43658738	41	2.5	42	81	4	122	45	23	18	13	1.84
43659657--43659733	38	2.0	38	100	0	154	41	20	12	24	1.88
43668446--43668493	24	2.0	24	95	0	87	25	29	14	31	1.95
43670335--43670471	50	2.8	48	76	8	132	28	21	27	22	1.99
43676029--43676084	21	2.5	22	72	16	53	21	16	8	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43678520--43678621	44	2.3	46	77	13	113	44	6	21	27	1.78
43678612--43678658	12	3.9	12	100	0	94	51	0	25	23	1.49
43679828--43679900	27	2.6	27	89	4	101	15	13	36	34	1.86
43680881--43680907	13	2.1	13	100	0	54	51	0	7	40	1.30
43681075--43681100	12	2.2	12	100	0	52	23	15	15	46	1.83
43682425--43682596	45	3.8	45	85	1	229	34	16	19	28	1.94
43682429--43682618	90	2.1	90	82	1	220	36	16	19	26	1.93
43682606--43682722	48	2.5	45	83	6	128	45	12	23	18	1.84
43682977--43683074	49	2.0	49	91	0	160	43	6	22	27	1.76
43683420--43683505	43	2.0	43	86	2	120	29	26	18	25	1.98
43683776--43683858	43	1.9	43	85	4	114	43	12	9	34	1.75
43688023--43688047	10	2.5	10	100	0	50	28	0	16	56	1.41
43692586--43692873	41	7.0	41	85	3	341	32	29	17	20	1.96
43692586--43692894	123	2.5	123	84	5	385	32	29	17	20	1.96
43692925--43693001	40	1.9	40	84	5	102	24	18	19	37	1.94
43701690--43701723	16	2.1	16	89	10	52	2	17	0	79	0.86
43705761--43705828	27	2.5	27	92	0	118	16	20	39	23	1.91
43705852--43705892	19	2.2	19	95	0	73	31	0	17	51	1.46
43706103--43706154	19	2.8	19	91	5	81	40	0	9	50	1.35
43705859--43706359	260	1.9	262	96	0	934	46	9	4	39	1.55
43706318--43706374	27	2.1	27	90	0	87	49	14	1	35	1.53
43706442--43706562	8	14.4	8	65	16	57	36	1	13	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43706410--43706589	57	3.6	49	74	16	170	33	1	13	52	1.48
43706415--43706504	22	3.9	22	82	13	117	33	1	13	52	1.48
43706705--43706762	27	2.1	27	83	3	71	25	27	12	34	1.91
43706717--43706783	27	2.5	27	95	0	116	16	32	19	31	1.94
43706846--43706895	12	4.1	12	76	23	59	66	0	0	34	0.92
43706843--43706897	13	4.1	15	73	21	52	61	0	0	38	0.96
43717367--43717414	13	3.6	13	78	13	53	64	2	2	31	1.16
43720145--43720190	24	1.9	24	91	8	76	36	0	2	60	1.09
43720257--43720435	68	2.9	59	84	13	259	45	9	5	40	1.59
43720346--43720373	9	3.1	9	100	0	56	57	10	0	32	1.33
43720287--43720460	68	2.6	68	96	2	318	47	9	4	39	1.54
43720461--43720521	22	2.8	22	82	0	68	45	1	1	50	1.21
43721928--43721970	2	21.5	2	95	0	68	4	0	44	51	1.22
43724160--43724197	19	2.0	20	94	5	69	23	10	10	55	1.65
43728956--43729022	29	2.3	30	94	2	118	23	7	23	44	1.79
43735966--43736002	12	3.2	12	88	11	51	0	21	0	78	0.75
43758611--43758641	15	2.0	16	93	6	55	67	12	0	19	1.22
43760554--43760589	18	2.1	16	90	10	54	30	5	2	61	1.33
43764371--43764479	57	1.9	57	87	7	159	25	26	18	29	1.98
43765324--43765358	15	2.2	17	90	10	56	51	8	0	40	1.33
43770005--43770197	50	3.8	50	84	0	251	25	21	30	22	1.99
43779625--43779686	31	2.0	31	100	0	124	32	9	16	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43783644--43783676	12	2.6	13	85	4	50	45	3	6	45	1.43
43789340--43789403	28	2.4	26	84	10	76	29	21	9	39	1.85
43789354--43789414	26	2.3	27	91	5	97	32	14	11	40	1.82
43791186--43791257	36	2.0	36	100	0	144	36	25	5	33	1.79
43792237--43792386	43	3.5	44	78	10	127	34	24	18	22	1.96
43792365--43792441	26	3.0	26	92	0	127	25	32	23	18	1.97
43794892--43794918	14	1.9	14	100	0	54	44	0	11	44	1.39
43795650--43795867	119	1.8	119	86	2	312	27	14	23	33	1.94
43797210--43797240	9	3.4	9	90	0	53	25	12	22	38	1.90
43797293--43797329	9	4.1	9	92	0	65	45	13	10	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206