genome.fa.s2.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  148  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45018068--45018152	44	2.0	43	88	2	125	29	12	28	29	1.94
45022446--45022481	18	1.9	19	88	5	56	38	0	8	52	1.32
45024916--45024971	22	2.6	22	85	2	69	12	30	28	28	1.93
45023981--45025585	805	2.0	798	89	1	2471	21	20	22	35	1.96
45029275--45029305	11	2.8	11	90	0	53	6	22	6	64	1.40
45032059--45032107	25	2.0	25	83	0	62	32	22	14	30	1.93
45038782--45038821	19	2.1	19	86	9	55	55	5	5	35	1.44
45041533--45041699	45	3.7	46	85	3	187	43	19	20	17	1.89
45041390--45041699	45	6.9	44	77	7	182	42	18	19	19	1.89
45041862--45041991	41	3.2	41	81	4	145	17	17	28	36	1.93
45044532--45044642	58	2.0	54	91	7	177	32	11	9	45	1.74
45059270--45059294	9	2.8	9	100	0	50	32	36	0	32	1.58
45060634--45060721	44	2.0	44	86	0	122	37	18	20	23	1.94
45061262--45061317	21	2.7	20	81	13	60	55	1	0	42	1.10
45061262--45061323	22	3.0	21	83	9	65	56	1	0	41	1.09
45068990--45069055	3	22.7	3	84	9	84	33	1	0	65	1.02
45069447--45069477	2	15.5	2	100	0	62	48	0	0	51	1.00
45069977--45070007	9	3.4	9	90	0	53	38	22	12	25	1.90
45071156--45071219	31	2.1	31	85	11	87	46	9	9	34	1.68
45072121--45072175	22	2.5	21	77	8	56	50	10	12	25	1.73
45074513--45074545	14	2.4	14	90	5	50	75	3	0	21	0.93
45076216--45076265	26	1.9	26	83	0	64	36	20	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45076737--45076770	17	2.0	17	100	0	68	29	17	11	41	1.85
45080870--45080972	40	2.5	40	83	7	136	33	19	5	41	1.75
45083726--45083760	16	2.1	16	89	5	52	40	0	0	60	0.97
45087940--45087981	22	1.9	22	85	9	59	45	0	11	42	1.41
45098608--45098654	20	2.3	20	81	0	58	19	51	19	10	1.75
45098621--45098659	20	2.0	20	89	0	60	20	51	17	10	1.74
45099519--45099599	24	3.3	24	81	10	74	27	7	1	64	1.28
45099557--45099623	3	22.3	3	78	6	73	29	2	4	62	1.29
45102662--45102713	9	5.9	9	78	13	54	7	7	3	80	1.00
45102706--45102772	26	2.4	29	76	16	70	16	7	4	71	1.25
45129501--45129533	17	1.9	17	100	0	66	36	15	6	42	1.71
45129748--45129989	50	4.9	50	85	2	265	27	22	28	21	1.99
45137511--45137540	9	3.2	9	95	4	51	0	16	0	83	0.65
45140122--45140202	40	2.0	40	95	0	144	23	20	13	41	1.88
45143347--45143407	10	6.0	10	79	11	61	65	1	0	32	1.02
45144075--45144218	25	5.8	24	81	4	101	29	13	18	37	1.90
45144084--45144206	50	2.4	50	83	4	149	30	13	17	37	1.89
45144109--45144218	25	4.3	26	82	8	129	29	14	18	38	1.90
45144084--45144218	51	2.7	50	83	1	171	30	14	17	37	1.89
45146877--45147000	50	2.5	50	87	0	176	22	29	20	27	1.99
45158736--45158982	50	4.8	50	80	6	230	27	21	27	23	1.99
45164973--45165020	23	2.0	24	96	4	89	12	12	16	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45169282--45169313	15	2.1	16	94	5	57	18	6	15	59	1.57
45171008--45171034	6	4.5	6	100	0	54	0	33	0	66	0.92
45176713--45176774	2	31.5	2	78	3	54	41	1	1	54	1.19
45178053--45178177	65	1.9	66	93	3	216	40	21	19	19	1.92
45178115--45178273	43	3.8	42	88	5	241	37	22	17	22	1.94
45178682--45178731	21	2.4	21	75	0	55	2	40	18	40	1.62
45184253--45184483	9	26.4	9	69	14	144	30	2	20	46	1.63
45184237--45184341	25	4.2	25	77	13	117	32	2	19	45	1.65
45184252--45184434	34	5.6	33	68	17	114	30	1	21	46	1.61
45184316--45184442	62	2.0	63	82	7	152	29	0	22	48	1.56
45184375--45184483	25	4.2	25	68	14	51	28	1	21	48	1.60
45184378--45184431	16	3.2	16	80	10	54	24	0	24	51	1.48
45185142--45185188	13	3.6	13	78	18	53	44	2	12	40	1.54
45185194--45185227	17	2.0	17	88	0	50	47	0	11	41	1.40
45186673--45186759	44	2.0	44	86	0	120	36	20	17	25	1.94
45187495--45187534	7	5.6	7	88	5	62	45	52	0	2	1.14
45188099--45188155	29	2.0	29	85	0	78	35	29	5	29	1.79
45188617--45189158	114	4.8	113	76	8	392	26	25	17	30	1.97
45188731--45189152	229	1.8	228	80	5	512	27	25	16	30	1.97
45190034--45190117	28	3.0	27	76	11	64	48	2	1	47	1.22
45195075--45195115	21	2.0	21	85	9	57	53	2	4	39	1.35
45196087--45196141	24	2.3	23	75	6	56	43	5	0	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45201852--45201880	11	2.6	11	100	0	58	6	51	6	34	1.55
45204462--45204521	30	2.0	31	90	3	95	40	5	15	40	1.68
45205690--45205731	22	1.9	22	90	0	66	59	30	2	7	1.37
45209994--45210172	45	4.0	45	84	4	211	37	24	15	22	1.93
45214715--45214763	16	2.9	17	84	9	55	51	0	6	42	1.27
45214722--45214763	20	2.2	18	87	8	57	52	0	2	45	1.13
45215505--45215555	27	1.9	27	84	11	70	15	13	7	62	1.52
45217064--45217380	110	2.9	110	90	1	471	34	17	16	31	1.92
45217679--45217720	22	1.9	22	85	0	57	52	2	0	45	1.13
45217676--45217727	22	2.4	21	75	9	50	53	1	1	42	1.23
45217865--45217938	3	24.3	3	75	13	62	67	2	2	27	1.17
45217891--45217939	22	2.2	22	88	0	71	73	2	0	24	0.94
45217897--45217935	19	2.1	19	90	0	60	74	0	0	25	0.82
45219387--45219845	132	3.5	130	88	4	676	29	24	17	28	1.97
45219840--45219982	45	3.2	45	67	15	134	22	29	23	25	1.99
45221291--45221343	12	4.2	12	73	21	54	0	20	0	79	0.74
45221291--45221341	7	6.7	7	79	20	50	0	19	0	80	0.71
45225613--45225928	109	2.9	110	87	3	428	35	16	16	31	1.91
45226207--45226261	2	29.0	2	76	10	53	52	1	0	45	1.11
45226400--45226454	3	18.3	3	76	14	51	63	3	3	29	1.28
45228218--45228251	16	2.1	16	100	0	68	32	29	0	38	1.58
45228567--45228617	27	1.9	27	84	4	68	21	15	9	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45233249--45233328	37	2.2	37	95	0	142	46	15	0	38	1.46
45234123--45234158	15	2.4	15	100	0	72	38	33	0	27	1.57
45237204--45237342	39	3.6	39	83	0	152	33	4	19	43	1.71
45242571--45242965	50	7.7	50	82	5	316	24	27	20	28	1.99
45242721--45242860	56	2.5	56	88	4	210	27	26	17	29	1.97
45242838--45242958	48	2.5	48	93	0	197	23	27	21	28	1.99
45250073--45250210	25	5.5	25	86	3	161	19	44	12	23	1.85
45250310--45250348	14	2.8	14	84	0	51	56	35	7	0	1.28
45251691--45251761	19	3.7	19	94	0	115	35	8	16	39	1.79
45251686--45251768	38	2.2	36	83	10	112	37	7	18	37	1.78
45251968--45252012	23	2.0	23	81	0	54	22	0	15	62	1.33
45252247--45252277	6	5.2	6	96	0	53	19	0	0	80	0.71
45252306--45252362	23	2.5	22	80	8	60	35	3	7	54	1.45
45253989--45254081	32	3.2	28	70	19	91	48	5	2	44	1.37
45253942--45254080	59	2.4	59	95	0	242	45	5	2	46	1.42
45253940--45254045	32	3.5	31	67	23	89	43	6	3	46	1.47
45262689--45262753	6	10.8	6	88	0	58	40	0	27	32	1.57
45266906--45266948	6	7.2	6	94	0	77	16	37	0	46	1.47
45269927--45270124	50	3.8	50	84	4	225	27	19	29	24	1.98
45270361--45270399	12	3.2	12	85	0	51	51	5	23	20	1.67
45271558--45271597	21	1.9	21	89	0	62	30	25	15	30	1.95
45274194--45274238	23	2.0	23	82	8	56	2	33	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45276658--45276693	6	5.8	6	90	3	54	63	0	19	16	1.30
45277887--45277929	21	2.0	23	86	9	63	25	6	18	48	1.73
45278626--45278660	2	17.5	2	87	0	52	45	0	2	51	1.16
45278953--45279003	13	3.8	13	76	19	52	23	1	7	66	1.28
45282185--45282289	27	3.9	27	70	9	88	20	29	16	33	1.95
45282169--45282284	54	2.1	54	87	0	160	22	28	15	33	1.95
45292104--45292147	21	2.1	21	100	0	88	13	25	4	56	1.56
45296143--45296168	2	13.0	2	100	0	52	50	0	0	50	1.00
45312445--45312521	38	2.0	38	100	0	154	28	27	2	41	1.69
45314543--45314603	25	2.4	25	91	0	104	18	13	29	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206