genome.fa.s2.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  49  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13991199--13991235	19	1.9	19	88	0	56	72	8	10	8	1.27
13994836--13994866	15	2.1	14	94	5	53	58	0	0	41	0.98
13999540--13999564	2	12.5	2	100	0	50	48	0	0	52	1.00
14000012--14000058	22	2.1	23	84	4	60	42	0	0	57	0.98
14000264--14000324	29	2.2	28	85	11	81	77	3	13	6	1.09
14000731--14000763	16	2.0	17	94	5	59	36	3	12	48	1.56
14000820--14000858	20	2.0	21	90	10	64	35	0	2	61	1.10
14006665--14006698	14	2.3	14	90	10	50	47	0	5	47	1.26
14007165--14007204	20	2.0	20	95	0	71	30	12	15	42	1.83
14008986--14009015	8	3.8	8	90	0	51	40	0	0	60	0.97
14008980--14009020	16	2.6	16	92	0	73	39	0	0	60	0.96
14010170--14010378	25	8.6	25	85	6	256	19	22	18	39	1.93
14011105--14011167	32	1.9	33	93	3	110	50	15	3	30	1.60
14011142--14011193	27	1.9	27	84	7	70	53	17	3	25	1.60
14011873--14011898	11	2.4	11	100	0	52	50	7	34	7	1.60
14016193--14016401	30	7.0	30	80	5	201	30	14	17	38	1.89
14016204--14016401	90	2.2	91	83	3	249	30	15	17	36	1.91
14017209--14017248	19	2.1	19	95	0	71	50	2	0	47	1.14
14020136--14020207	22	3.3	21	69	9	54	30	9	20	38	1.85
14030668--14030725	26	2.2	26	96	0	107	27	3	8	60	1.42
14030668--14030726	12	4.5	13	75	12	59	28	3	8	59	1.43
14033190--14033221	15	2.1	15	94	0	55	34	18	3	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14035259--14035293	13	2.8	13	91	8	56	22	0	11	65	1.24
14036641--14037037	126	3.2	125	87	4	575	37	14	17	30	1.90
14040565--14040607	18	2.4	18	92	0	68	41	9	27	20	1.83
14042847--14042886	3	13.3	3	94	0	71	30	0	2	67	1.04
14046666--14046722	22	2.6	22	82	0	60	47	12	19	21	1.81
14056286--14056381	49	2.0	49	91	0	156	27	25	5	42	1.76
14068250--14068278	13	2.2	13	100	0	58	37	6	0	55	1.27
14072998--14073049	16	3.2	16	97	0	95	23	0	36	40	1.55
14073030--14073120	45	2.0	45	85	2	121	27	6	28	37	1.82
14073211--14073424	50	4.2	49	64	18	121	45	3	4	46	1.40
14073264--14073318	15	3.4	16	80	16	53	54	1	0	43	1.10
14073270--14073318	16	2.9	18	80	20	61	55	0	0	44	0.99
14073179--14073492	156	2.0	156	97	0	592	44	3	5	46	1.43
14073366--14073578	67	3.1	67	65	16	168	46	3	3	46	1.37
14073440--14073474	18	2.0	17	88	5	52	54	0	0	45	0.99
14073357--14073622	137	1.9	138	91	0	435	44	3	4	47	1.40
14073378--14073656	137	2.0	135	82	6	339	45	5	3	45	1.43
14081853--14081890	20	1.9	20	84	10	51	57	5	5	31	1.43
14081932--14082021	37	2.4	37	84	0	117	48	2	8	40	1.47
14082150--14082174	3	8.3	3	100	0	50	68	0	0	32	0.90
14083980--14084083	44	2.4	43	82	6	122	25	26	19	28	1.98
14094756--14094786	16	2.0	15	93	6	53	38	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14096526--14096563	20	1.9	20	84	10	51	57	5	5	31	1.43
14096570--14096690	37	3.3	37	83	2	147	45	4	10	39	1.58
14096588--14096694	37	2.9	37	87	0	151	43	4	11	40	1.61
14096806--14096860	3	18.3	3	100	0	110	67	0	0	32	0.91
14103766--14103801	15	2.4	15	95	0	63	61	13	0	25	1.33
14113243--14113284	20	2.1	20	86	0	57	47	0	7	45	1.30
14122134--14122168	18	2.0	18	94	5	63	11	45	31	11	1.76
14126845--14126907	28	2.3	27	83	8	83	28	15	28	26	1.96
14126818--14127095	27	10.3	27	78	7	235	31	15	25	26	1.96
14126818--14127111	108	2.7	108	75	11	289	31	15	25	27	1.96
14128210--14128266	9	6.3	9	89	0	87	24	8	21	45	1.80
14128191--14128266	27	2.8	27	83	0	98	27	9	19	43	1.81
14128329--14128387	28	2.1	28	87	3	84	38	8	15	37	1.78
14128980--14129032	16	3.3	16	89	0	79	33	7	35	22	1.83
14129012--14129109	44	2.2	46	90	3	155	26	5	31	36	1.78
14129012--14129119	46	2.5	44	82	11	127	26	4	32	36	1.77
14129247--14129498	122	2.2	110	82	10	279	52	3	1	41	1.31
14129364--14129400	16	2.4	17	82	17	53	54	0	0	45	1.00
14129361--14129424	28	2.4	28	86	5	87	57	0	1	40	1.08
14130827--14130930	49	2.1	49	87	3	147	50	11	7	30	1.67
14132324--14132384	25	2.5	25	91	2	97	44	19	6	29	1.76
14140346--14140441	47	2.0	47	82	11	117	53	4	7	35	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14141988--14142109	44	2.8	44	81	2	129	31	23	17	27	1.97
14142072--14142197	44	2.9	44	77	7	114	24	25	19	30	1.98
14142290--14142555	87	3.1	87	90	0	399	23	23	22	30	1.99
14144210--14144268	25	2.3	25	85	8	75	6	10	8	74	1.22
14144183--14144280	30	3.2	30	79	8	90	10	9	9	71	1.32
14145413--14145438	13	2.0	13	100	0	52	15	23	23	38	1.92
14146748--14146791	20	2.1	21	83	4	54	11	18	11	59	1.61
14154085--14154321	118	2.0	118	100	0	474	28	18	12	40	1.87
14160287--14160338	23	2.2	25	86	6	72	51	5	1	40	1.37
14162824--14162865	22	1.9	22	90	0	66	35	2	26	35	1.70
14164784--14164832	24	2.0	24	100	0	98	42	0	8	48	1.32
14165376--14165590	113	1.9	113	88	1	324	28	19	8	43	1.80
14165376--14165603	56	4.0	56	88	1	321	28	19	7	44	1.79
14166963--14167167	102	2.0	102	94	0	356	34	17	18	30	1.93
14170215--14170258	23	1.9	23	81	9	54	40	25	15	18	1.90
14179554--14179588	6	5.8	6	100	0	70	34	0	0	65	0.93
14188904--14188937	6	5.7	6	100	0	68	35	0	0	64	0.94
14193364--14193414	12	4.2	12	76	11	50	58	0	1	39	1.09
14193926--14193966	17	2.5	17	84	11	50	41	0	0	58	0.98
14194535--14194563	6	4.8	6	100	0	58	82	0	17	0	0.66
14197946--14198003	23	2.5	24	81	18	70	48	1	5	44	1.35
14198552--14198630	42	1.9	40	82	10	97	31	15	21	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14198615--14198860	86	2.9	85	83	5	307	23	17	30	27	1.97
14198644--14198903	43	6.1	43	82	4	276	22	18	30	28	1.97
14199865--14199936	3	24.0	3	100	0	144	33	0	0	66	0.92
14207719--14207774	3	18.7	3	100	0	112	33	0	0	66	0.92
14208224--14208319	39	2.5	39	80	6	108	20	25	28	26	1.99
14208977--14209054	22	3.5	22	85	0	111	26	15	25	32	1.95
14211999--14212056	31	2.0	29	86	10	82	43	3	15	37	1.64
14212794--14212840	9	5.2	9	87	7	69	63	2	0	34	1.06
14212811--14212865	9	5.2	11	83	12	55	67	1	0	30	1.01
14220855--14220945	43	2.1	43	95	0	164	17	32	34	15	1.91
14222283--14222388	26	4.1	26	76	8	99	42	18	22	16	1.89
14222283--14222458	78	2.3	77	79	7	178	39	19	22	18	1.92
14222392--14222454	26	2.4	26	74	10	65	38	17	23	20	1.93
14222498--14222711	65	3.3	65	83	3	270	36	21	19	23	1.95
14235459--14235495	17	2.2	17	95	0	65	43	27	10	18	1.83
14242594--14242772	27	6.7	27	76	6	141	21	16	19	41	1.90
14242633--14242758	54	2.3	54	84	0	162	22	18	18	41	1.90
14244058--14244093	11	3.2	11	96	4	63	33	33	0	33	1.58
14252486--14252524	19	2.0	20	85	5	53	28	7	5	58	1.47
14255094--14255118	13	1.9	13	100	0	50	44	8	16	32	1.76
14259456--14259486	16	1.9	16	100	0	62	25	16	19	38	1.92
14262889--14262915	14	1.9	14	100	0	54	29	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14265837--14265866	15	2.0	15	93	0	51	33	16	13	36	1.88
14266386--14266429	22	2.0	22	100	0	88	36	22	9	31	1.86
14269839--14269868	12	2.5	12	94	0	51	30	6	16	46	1.73
14274130--14274163	17	2.0	17	88	0	50	50	11	20	17	1.77
14274929--14275037	41	2.7	41	88	0	146	26	20	23	29	1.99
14278447--14278566	41	2.9	41	87	0	150	27	20	25	27	1.99
14293453--14293668	44	4.9	44	80	5	220	30	20	16	32	1.95
14296583--14296615	16	2.1	16	100	0	66	27	24	30	18	1.98
14300576--14300638	25	2.5	25	87	5	83	31	23	26	17	1.97
14302826--14302934	40	2.7	41	91	5	177	29	22	26	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206