genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  106  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31370954--31371002	16	2.9	18	80	20	61	55	0	0	44	0.99
31371050--31371262	67	3.1	67	65	20	163	46	4	3	46	1.38
31370855--31371182	156	2.1	156	97	0	611	42	3	6	46	1.47
31371124--31371158	18	2.0	17	88	5	52	54	0	0	45	0.99
31371041--31371300	137	1.9	137	91	1	387	44	4	4	46	1.42
31371062--31371340	137	2.0	135	82	8	332	45	5	3	45	1.44
31380277--31380338	31	2.1	30	87	6	90	41	8	9	40	1.67
31380275--31380341	29	2.3	27	80	14	80	40	7	10	41	1.67
31380931--31380976	2	23.5	2	91	4	76	50	0	0	50	1.00
31381581--31381631	13	3.8	13	82	14	52	64	1	1	31	1.15
31381714--31381744	16	1.9	16	93	0	53	48	0	0	51	1.00
31382579--31382663	9	9.4	9	86	0	125	40	21	12	25	1.89
31389374--31389413	20	2.0	20	100	0	80	30	25	10	35	1.88
31390915--31390958	19	2.3	19	82	17	56	36	13	0	50	1.42
31391072--31391113	17	2.4	18	80	4	50	11	14	2	71	1.24
31396062--31396157	47	2.0	50	83	6	126	34	25	8	32	1.85
31407346--31407389	22	2.0	22	82	8	54	52	18	6	22	1.69
31415786--31415853	29	2.5	26	79	11	73	48	4	4	42	1.43
31415888--31415938	20	2.5	22	75	18	56	52	1	0	45	1.12
31422574--31422785	45	4.7	46	83	6	254	19	21	15	43	1.87
31422584--31422785	90	2.2	91	86	4	284	19	21	14	44	1.86
31422573--31422828	90	2.8	89	80	5	264	19	19	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31432367--31432413	20	2.3	20	82	7	60	63	2	4	29	1.25
31432769--31432798	2	15.0	2	100	0	60	50	0	0	50	1.00
31449320--31452190	958	3.0	959	99	0	5636	29	10	20	39	1.86
31459159--31459242	42	2.0	42	95	0	150	45	9	15	29	1.78
31474537--31474585	22	2.3	21	76	13	55	38	2	2	57	1.22
31477466--31477499	16	2.2	15	89	5	50	44	0	0	55	0.99
31478225--31478272	25	2.0	25	87	4	71	35	0	4	60	1.16
31479907--31479945	19	2.1	19	95	0	69	41	5	2	51	1.38
31480207--31480334	42	3.0	43	84	6	172	13	21	16	48	1.80
31480231--31480331	21	4.8	21	70	4	87	13	20	15	49	1.79
31481867--31481915	25	2.1	22	81	11	53	55	4	14	26	1.57
31496895--31496927	17	1.9	17	88	11	50	45	9	9	36	1.68
31506807--31506859	15	3.3	15	73	14	52	18	35	5	39	1.75
31506799--31506886	33	2.7	33	87	0	131	18	36	4	40	1.71
31510249--31510374	43	2.9	44	79	14	129	30	28	19	21	1.97
31511710--31511776	33	2.0	33	94	0	116	41	16	13	28	1.86
31512572--31512612	21	2.0	21	95	0	73	36	12	4	46	1.63
31515656--31515872	90	2.4	90	80	3	215	32	16	22	28	1.95
31519968--31520008	18	2.3	18	88	12	59	43	4	9	41	1.59
31522265--31522314	20	2.5	20	83	6	66	44	8	16	32	1.76
31522500--31522541	20	2.1	19	83	16	50	26	9	16	47	1.77
31532878--31532910	17	1.9	17	93	0	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31532949--31532985	16	2.3	16	86	13	58	40	0	0	59	0.97
31532971--31533006	18	1.9	19	88	5	56	55	0	2	41	1.14
31532970--31533046	31	2.5	30	76	19	86	50	0	1	48	1.09
31537777--31537843	34	1.9	35	87	3	100	31	8	14	44	1.76
31540111--31540166	22	2.5	22	85	5	69	21	17	10	50	1.77
31540935--31540963	13	2.2	13	100	0	58	31	24	6	37	1.82
31544357--31544497	40	3.6	40	75	6	144	28	16	23	31	1.96
31546426--31546851	9	49.2	9	69	19	173	39	0	15	45	1.51
31546431--31546550	16	7.9	16	69	19	96	35	1	17	45	1.58
31546445--31546599	25	6.2	25	77	11	129	38	1	15	45	1.55
31546471--31546652	34	5.2	35	72	15	119	37	1	17	43	1.56
31546605--31546851	16	13.8	18	68	24	114	39	0	14	46	1.45
31546502--31546644	25	5.6	25	71	17	91	39	0	16	42	1.54
31546524--31546855	90	3.9	85	83	12	346	40	0	14	45	1.44
31546604--31546911	56	5.5	54	78	13	229	39	0	13	46	1.44
31546446--31546873	34	13.2	32	70	20	118	39	0	14	45	1.49
31546720--31546827	22	5.1	22	75	22	106	39	0	12	48	1.40
31546838--31546883	22	2.1	22	95	0	83	41	0	10	47	1.38
31546860--31546924	34	1.9	34	96	0	121	43	0	10	46	1.38
31546764--31546917	56	2.8	56	98	0	299	41	0	10	48	1.37
31546534--31546920	90	4.4	87	81	14	342	41	0	13	45	1.43
31547461--31547556	39	2.3	39	87	10	129	44	0	10	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31547518--31547559	17	2.5	17	80	3	50	42	0	11	45	1.41
31547465--31547585	22	5.5	22	73	17	85	43	0	11	43	1.46
31550227--31550301	7	10.0	7	71	13	51	29	49	1	20	1.57
31551539--31551606	14	4.9	14	72	16	52	41	33	0	25	1.56
31553271--31553561	23	12.4	22	75	9	159	43	18	13	24	1.86
31553286--31553508	48	4.7	48	70	19	166	43	18	13	24	1.86
31553251--31553537	70	4.1	70	89	2	432	43	19	12	24	1.86
31554110--31554140	2	15.5	2	100	0	62	48	0	0	51	1.00
31554311--31554408	28	3.5	27	79	5	106	30	26	13	29	1.94
31554526--31554553	2	14.0	2	100	0	56	50	0	0	50	1.00
31561637--31561698	27	2.3	28	83	8	83	24	27	9	38	1.86
31578821--31578846	3	8.7	3	100	0	52	34	30	0	34	1.58
31578845--31578955	6	18.5	6	95	3	143	26	0	0	72	0.90
31579401--31579442	19	2.2	20	82	4	50	30	7	11	50	1.66
31579776--31579822	23	2.0	23	84	8	60	51	0	8	40	1.33
31580152--31580178	7	3.9	7	100	0	54	44	0	0	55	0.99
31583331--31583364	2	17.0	2	87	0	50	50	5	0	44	1.26
31586800--31586831	3	10.7	3	100	0	64	31	0	0	68	0.90
31586975--31587472	44	11.5	43	67	15	233	28	23	19	28	1.98
31586971--31587472	217	2.3	217	93	0	844	28	23	19	28	1.98
31599603--31599644	18	2.3	18	80	19	52	57	7	2	33	1.39
31602409--31602435	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31609295--31609341	2	24.0	2	95	4	87	51	0	0	48	1.00
31614641--31614824	90	2.0	93	83	6	232	29	17	14	38	1.90
31614869--31615009	63	2.2	63	87	5	196	34	21	12	32	1.90
31620870--31620894	6	4.2	6	100	0	50	84	0	0	16	0.63
31622573--31622606	16	2.1	16	94	0	59	44	2	17	35	1.64
31624406--31624470	27	2.4	27	76	5	69	15	20	32	32	1.93
31635578--31635644	22	3.0	22	93	0	107	25	25	14	34	1.94
31640280--31640319	19	2.0	21	85	9	57	57	0	0	42	0.98
31646149--31646216	25	2.7	25	83	0	82	30	22	20	26	1.98
31651469--31651527	15	3.5	15	72	27	55	52	6	0	40	1.28
31662300--31662462	66	2.5	66	83	4	195	41	17	26	14	1.88
31662451--31662573	21	5.9	21	85	0	111	36	17	39	5	1.74
31662881--31663150	86	3.2	83	79	8	276	24	15	29	30	1.96
31662919--31663149	43	5.4	43	81	3	243	23	16	31	29	1.96
31667779--31667820	20	2.1	20	100	0	84	40	23	4	30	1.75
31669776--31669800	13	1.9	13	100	0	50	40	0	8	52	1.31
31669801--31669871	25	2.9	24	79	8	72	47	2	1	47	1.25
31672851--31672917	22	3.0	22	76	8	73	40	17	25	16	1.90
31675304--31675365	14	4.3	14	74	12	54	66	3	1	29	1.17
31677881--31677953	29	2.6	29	84	6	87	47	0	2	49	1.15
31678174--31678206	16	2.1	16	88	11	50	57	3	0	39	1.14
31679925--31679971	14	3.3	15	70	11	53	51	8	0	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31679904--31679996	28	3.4	27	83	4	132	47	8	0	44	1.34
31680398--31680463	19	3.5	19	79	4	89	37	10	1	50	1.47
31680611--31680664	26	2.1	26	100	0	108	22	27	27	22	1.99
31680687--31680725	18	2.1	19	95	4	71	69	0	2	28	1.02
31682181--31682304	54	2.3	54	85	0	167	25	27	29	18	1.98
31685209--31685244	4	9.2	4	93	6	65	77	0	22	0	0.76
31685945--31685983	16	2.4	16	86	0	51	35	33	10	20	1.86
31687243--31687279	9	4.1	9	92	0	65	29	10	13	45	1.77
31688398--31688449	9	5.6	9	84	8	68	23	5	28	42	1.77
31688398--31688451	20	2.8	20	91	5	85	22	5	27	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206