Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  205  of  206  ( 24623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62123680--62124197
239
2.2
239
98
0
1000
45
9
10
34
1.70
62124078--62124120
20
2.2
19
83
4
50
55
6
2
34
1.39
62126375--62126449
37
2.0
37
94
0
132
18
22
22
36
1.95
62127260--62127307
24
2.0
24
95
0
87
39
20
10
29
1.86
62128420--62128501
41
2.0
41
100
0
164
7
21
29
41
1.80
62137769--62137798
14
2.1
14
100
0
60
53
6
6
33
1.53
62152523--62152552
15
2.0
15
100
0
60
66
13
20
0
1.24
62153926--62153950
2
12.5
2
100
0
50
48
0
0
52
1.00
62156830--62156969
69
2.0
69
98
0
271
23
22
29
24
1.99
62165475--62165517
22
2.0
22
86
4
61
34
4
2
58
1.32
62166285--62166582
99
3.0
100
82
8
363
25
6
19
49
1.71
62169454--62169481
3
9.3
3
100
0
56
32
0
35
32
1.58
62174782--62174837
23
2.3
24
84
6
69
58
0
3
37
1.15
62178290--62178343
22
2.5
22
81
3
65
27
7
9
55
1.58
62179822--62179869
21
2.3
21
85
0
78
37
18
14
29
1.91
62183026--62183065
8
5.0
8
96
0
71
37
10
12
40
1.77
62183493--62183530
20
2.0
20
94
5
69
63
0
2
34
1.09
62183494--62183539
11
4.4
11
74
20
53
60
0
2
36
1.09
62188374--62188399
11
2.4
11
100
0
52
42
0
0
57
0.98
62196532--62196574
20
2.2
20
84
12
54
58
2
0
39
1.11
62198271--62198440
45
3.9
43
77
13
163
24
18
28
28
1.98
62199214--62199273
2
30.0
2
100
0
120
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62200093--62200172
40
2.0
40
85
0
106
22
6
20
51
1.69
62209915--62210129
106
2.0
106
86
1
297
39
25
8
26
1.84
62213900--62213928
2
14.5
2
100
0
58
48
0
0
51
1.00
62217143--62217167
13
1.9
13
100
0
50
20
8
16
56
1.65
62232863--62232897
18
1.9
19
88
11
56
54
5
0
40
1.24
62241186--62241391
62
3.3
61
80
9
252
36
20
12
30
1.89
62259032--62259074
21
2.0
21
86
0
59
44
2
6
46
1.43
62260561--62261456
275
3.3
272
84
2
1107
23
26
19
30
1.98
62267752--62267804
24
2.4
22
81
9
63
49
0
0
50
1.00
62270129--62270158
12
2.6
11
90
10
51
0
10
0
90
0.47
62285015--62285094
30
2.8
28
90
9
133
58
0
1
40
1.06
62285026--62285083
11
5.5
11
75
19
61
58
0
1
39
1.08
62285069--62285133
19
3.4
19
67
12
60
64
0
3
32
1.09
62285050--62285132
39
2.1
39
93
0
139
62
0
3
33
1.12
62296285--62296400
47
2.5
47
95
0
214
16
6
23
54
1.64
62296542--62296572
15
2.1
15
100
0
62
19
0
19
61
1.35
62306302--62306357
28
2.1
28
83
9
73
51
10
16
21
1.74
62311894--62311978
22
3.9
22
85
0
116
31
14
24
29
1.94
62314638--62315026
201
1.9
198
87
1
562
37
19
18
25
1.94
62314349--62315314
486
2.0
487
86
3
1365
37
19
17
25
1.93
62318563--62318604
17
2.5
17
100
0
84
0
19
9
71
1.13
62320257--62320296
20
2.0
20
100
0
80
25
10
20
45
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62323827--62323859
15
2.1
16
88
5
50
81
6
0
12
0.85
62325851--62326251
102
3.8
102
87
3
480
17
24
22
35
1.95
62326034--62326371
111
3.0
109
83
4
372
20
24
20
35
1.96
62326095--62326443
111
3.1
110
83
3
351
22
24
19
34
1.96
62327468--62327503
2
18.0
2
100
0
72
50
0
0
50
1.00
62328764--62328852
43
2.1
43
80
4
99
35
3
3
57
1.32
62328812--62328893
34
2.3
35
82
12
89
39
1
3
56
1.25
62328812--62328894
35
2.4
36
82
13
102
38
1
3
56
1.24
62328847--62328932
46
1.9
43
81
11
102
36
1
2
60
1.17
62329540--62329584
23
2.0
23
100
0
90
35
0
22
42
1.54
62330315--62330357
22
2.0
22
85
0
59
13
18
13
53
1.73
62331603--62331637
17
2.1
17
89
5
54
60
0
0
40
0.97
62332180--62332258
37
2.2
37
84
11
101
35
1
5
58
1.28
62332660--62332907
123
2.0
123
91
1
399
34
8
18
37
1.82
62343674--62343728
27
2.1
27
86
3
76
29
0
1
69
0.99
62343904--62344185
143
2.0
143
92
0
465
33
18
19
29
1.95
62356844--62356869
13
2.0
13
100
0
52
38
15
15
30
1.88
62362646--62362685
2
21.0
2
90
10
66
50
0
0
50
1.00
62371997--62372028
15
2.1
16
88
11
50
18
6
6
68
1.32
62372649--62372724
30
2.5
30
79
12
84
55
3
1
39
1.27
62372714--62372746
16
2.0
17
88
5
50
60
0
0
39
0.97
62375156--62375183
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62375183--62375215
2
16.5
2
100
0
66
0
0
48
51
1.00
62376768--62376809
21
2.0
20
86
13
59
52
0
0
47
1.00
62378720--62378762
22
2.0
22
100
0
86
58
4
4
32
1.39
62396222--62396835
288
2.1
288
85
4
830
42
20
11
24
1.85
62400030--62400251
91
2.4
92
89
6
322
41
0
18
39
1.56
62400929--62400971
16
2.7
16
74
0
50
51
30
0
18
1.47
62401022--62401136
40
2.9
39
84
7
133
25
26
24
23
2.00
62401036--62401147
40
2.8
40
84
2
152
24
25
22
27
2.00
62407064--62407131
31
2.3
29
79
5
73
47
2
0
50
1.16
62408302--62408358
22
2.6
22
83
8
71
63
12
8
15
1.52
62408692--62408761
28
2.4
31
83
9
92
50
2
0
47
1.16
62408986--62409033
23
2.0
25
84
8
64
31
0
4
64
1.12
62409311--62409353
22
2.0
22
81
9
52
23
11
6
58
1.57
62410460--62410592
50
2.7
49
90
4
203
26
15
27
30
1.96
62410606--62410694
45
2.0
45
93
0
151
25
17
23
32
1.97
62418917--62419018
50
2.0
50
86
3
143
9
25
7
56
1.58
62423952--62423996
2
23.0
2
95
4
83
51
0
0
48
1.00
62440454--62440484
2
15.5
2
100
0
62
51
0
0
48
1.00
62441547--62441607
11
5.9
11
75
21
60
57
0
1
40
1.08
62441547--62441663
39
3.0
40
88
8
186
62
0
0
36
1.01
62441541--62441665
40
3.2
40
88
4
191
62
0
0
36
1.01
62444388--62444478
4
22.8
4
95
0
146
20
0
28
50
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62452439--62452490
23
2.3
23
82
0
59
65
7
25
1
1.30
62487828--62487866
16
2.4
16
82
0
51
74
7
15
2
1.15
62491475--62491513
16
2.4
16
82
0
51
74
7
15
2
1.15
62491833--62491882
26
1.9
26
91
0
82
10
14
24
52
1.71
62495226--62495260
17
1.9
19
88
11
56
40
0
5
54
1.24
62505640--62505699
23
2.5
24
76
12
70
31
0
5
63
1.16
62512694--62512722
2
15.0
2
92
7
51
48
0
0
51
1.00
62515524--62515559
2
18.0
2
100
0
72
50
0
0
50
1.00
62519390--62519417
6
4.7
6
100
0
56
50
14
0
35
1.43
62520353--62520386
2
17.0
2
100
0
68
50
0
0
50
1.00
62523482--62523514
2
16.5
2
100
0
66
51
0
0
48
1.00
62524632--62524703
28
2.6
26
75
20
67
58
2
2
36
1.27
62524671--62524708
18
2.1
18
85
9
51
68
2
0
28
1.03
62563507--62563561
4
13.8
4
100
0
110
25
0
23
50
1.49
62570782--62570844
31
2.1
30
88
5
92
31
7
11
49
1.67
62576136--62576226
46
2.0
46
95
0
164
38
20
6
34
1.79
62584678--62584703
2
13.0
2
100
0
52
50
0
50
0
1.00
62585643--62585688
7
6.6
7
97
0
83
28
2
28
41
1.68
62587919--62587970
26
2.0
26
88
0
77
23
28
9
38
1.86
62588116--62588146
6
5.2
6
100
0
62
16
35
16
32
1.91
62588665--62588697
6
5.5
6
100
0
66
33
36
15
15
1.88
62598556--62598604
4
12.2
4
100
0
98
51
24
0
24
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62623984--62624037
28
1.9
29
81
7
67
51
3
1
42
1.30
62624289--62624334
24
2.0
23
87
12
67
73
2
0
23
0.94
62624711--62624756
18
2.7
16
81
15
56
13
17
0
69
1.19
62631748--62631975
113
2.0
113
94
0
402
38
17
11
32
1.86
62634676--62634719
22
2.0
22
90
0
70
22
11
29
36
1.89
62640774--62640817
20
2.2
20
84
11
56
52
4
2
40
1.34
62643840--62643869
9
3.3
9
95
0
51
36
6
0
56
1.26
62645946--62645974
2
14.5
2
100
0
58
48
0
0
51
1.00
62647716--62647752
18
2.0
19
94
5
67
64
5
18
10
1.43
62673164--62673246
22
3.6
22
81
4
85
19
26
15
38
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206