genome.fa.s2.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  120  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35822191--35822284	28	3.4	28	83	4	129	29	25	14	29	1.95
35822438--35822588	57	2.6	57	91	3	241	37	29	9	23	1.87
35828690--35828872	51	3.6	49	82	5	213	24	18	27	30	1.97
35830870--35830946	37	2.1	37	100	0	154	32	27	5	35	1.79
35833928--35834087	28	5.8	28	78	4	137	26	25	15	33	1.95
35833956--35834105	56	2.7	55	78	5	149	27	24	14	34	1.94
35842298--35842375	39	2.0	39	100	0	156	20	17	30	30	1.96
35848010--35848072	32	2.0	32	84	6	83	31	14	14	39	1.86
35848232--35848284	26	2.0	26	85	7	72	58	1	1	37	1.20
35848293--35848355	28	2.2	28	85	0	81	57	3	1	38	1.24
35848631--35848694	26	2.6	25	77	5	67	28	1	4	65	1.21
35851688--35851763	27	2.9	26	75	7	82	32	7	7	51	1.60
35852161--35852189	5	5.8	5	100	0	58	82	0	0	17	0.66
35852630--35852666	11	3.5	11	85	7	58	29	0	0	70	0.88
35856915--35856998	14	5.8	14	76	5	60	25	28	26	20	1.99
35856915--35856999	29	2.9	29	84	3	100	25	28	25	20	1.99
35856936--35856999	14	4.5	14	76	3	65	28	29	23	18	1.98
35857030--35857068	15	2.6	15	87	0	51	28	41	17	12	1.87
35866891--35866926	13	2.9	13	92	8	58	38	0	0	61	0.96
35867110--35867134	10	2.5	10	100	0	50	40	0	0	60	0.97
35881362--35881388	7	3.9	7	100	0	54	44	40	0	14	1.46
35887400--35887498	49	2.0	51	88	4	148	55	11	7	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35890924--35890998	37	2.0	37	100	0	150	26	26	2	44	1.68
35892061--35892098	17	2.2	18	86	13	53	42	10	15	31	1.81
35892092--35892245	51	3.0	51	92	2	249	55	11	6	26	1.58
35893436--35893461	9	2.9	9	100	0	52	76	11	0	11	1.01
35902403--35902442	21	1.9	21	84	0	53	25	7	25	42	1.80
35904608--35904710	21	4.9	21	75	14	79	21	37	22	18	1.94
35904617--35904710	42	2.2	42	81	7	111	23	38	22	15	1.93
35905663--35905723	23	2.6	23	81	2	68	42	16	13	27	1.85
35905670--35905730	24	2.6	23	81	2	68	44	16	14	24	1.85
35906453--35906498	24	1.9	24	81	0	56	73	4	4	17	1.15
35909618--35909664	14	3.4	13	82	11	58	76	2	0	21	0.89
35909620--35909660	20	2.0	20	90	9	66	75	2	0	21	0.92
35913622--35913657	9	4.0	9	96	0	63	75	0	22	2	0.94
35917398--35917773	189	2.0	189	93	0	635	24	14	23	37	1.92
35919180--35919273	49	1.9	49	93	4	163	41	6	26	25	1.79
35920056--35920118	17	3.4	18	82	10	65	73	3	3	20	1.12
35924015--35924139	27	4.6	27	78	15	123	29	12	19	38	1.89
35924013--35924138	54	2.3	52	77	11	146	30	12	19	37	1.89
35924013--35924154	27	5.3	26	76	12	81	32	12	18	36	1.88
35933035--35933073	20	2.0	20	85	10	53	46	12	5	35	1.65
35938826--35938907	25	3.3	25	79	16	89	30	25	20	23	1.99
35940179--35940236	24	2.5	23	80	5	71	27	20	39	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35944824--35944855	2	16.0	2	100	0	64	50	0	0	50	1.00
35952758--35952802	20	2.2	20	84	0	54	13	35	13	37	1.84
35959925--35959981	20	2.9	18	76	12	51	19	3	7	70	1.26
35966903--35966988	28	2.8	31	74	16	90	33	20	20	24	1.97
35967085--35967156	26	2.8	26	78	4	74	31	25	25	18	1.97
35967331--35967418	27	3.3	27	84	6	115	17	14	20	47	1.82
35974604--35974721	28	4.0	28	81	12	130	27	23	24	23	2.00
35974643--35974720	28	2.8	28	98	0	147	24	24	25	25	2.00
35975064--35975123	27	2.2	28	81	3	77	21	20	20	38	1.94
35975077--35975193	27	4.4	25	81	10	117	17	18	18	45	1.86
35975077--35975180	54	1.9	54	86	7	149	16	19	20	44	1.87
35975077--35975193	54	2.2	54	83	9	141	17	18	18	45	1.86
35975401--35975453	19	2.8	19	78	16	65	24	41	18	15	1.89
35998223--35998600	126	3.0	124	87	4	517	29	15	22	33	1.94
35998270--35998600	124	2.6	126	89	2	506	28	16	22	33	1.95
36001791--36001923	22	5.7	22	71	13	95	26	0	29	44	1.55
36001815--36002152	29	13.1	27	67	22	158	28	0	26	44	1.54
36001828--36001898	23	3.1	22	74	23	67	26	0	28	45	1.54
36001790--36002140	51	6.8	51	79	13	371	28	0	27	44	1.55
36001785--36001926	45	3.0	43	83	10	131	28	0	27	44	1.55
36001821--36002215	104	4.0	96	82	12	365	29	0	25	45	1.56
36001790--36002086	155	1.9	158	84	7	408	28	0	27	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36001946--36001986	22	1.9	21	95	5	73	24	0	31	43	1.54
36001935--36002225	23	12.0	23	73	20	222	29	0	26	43	1.58
36002049--36002087	21	1.9	20	94	5	69	25	0	33	41	1.56
36001988--36002207	72	3.1	67	82	14	232	29	0	26	44	1.58
36002745--36002779	18	1.9	18	94	0	61	34	8	31	25	1.86
36003426--36003450	7	3.6	7	100	0	50	60	12	0	28	1.32
36004645--36004679	10	3.2	11	88	12	54	45	0	37	17	1.48
36005878--36005948	26	2.7	26	97	0	133	22	23	23	29	1.99
36007322--36007474	76	2.0	76	96	0	279	30	16	22	30	1.96
36011947--36012073	26	4.9	26	78	2	105	31	14	11	41	1.83
36021385--36021443	22	2.7	22	79	7	57	38	18	5	37	1.73
36036014--36036045	16	1.9	16	93	6	55	46	3	0	50	1.17
36037720--36037751	15	2.1	15	94	0	55	75	9	0	15	1.05
36039567--36039625	20	3.0	20	76	0	73	40	16	28	13	1.87
36041575--36041602	7	4.0	7	100	0	56	14	0	0	85	0.59
36043190--36043307	45	2.6	45	86	0	155	18	17	18	44	1.87
36048196--36048253	21	2.5	25	81	15	72	55	12	0	32	1.37
36048196--36048262	24	3.0	23	76	6	66	52	11	0	35	1.39
36048424--36048470	20	2.3	20	88	0	76	31	14	10	42	1.80
36048549--36048622	24	3.0	25	76	7	71	44	9	0	45	1.36
36049012--36049145	43	3.1	42	78	4	119	26	19	18	35	1.95
36049046--36049147	43	2.4	43	84	0	123	25	17	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36055333--36056448	59	19.2	59	84	4	1286	44	3	5	45	1.44
36056048--36056085	19	2.0	20	89	5	60	52	5	0	42	1.24
36058400--36058448	25	2.0	25	91	0	80	28	24	28	18	1.98
36069238--36069344	53	2.0	53	100	0	214	54	12	16	16	1.71
36070542--36070575	17	2.0	17	88	0	50	52	14	0	32	1.42
36078040--36078081	12	4.0	11	80	20	54	50	16	0	33	1.46
36078427--36078503	38	2.0	41	87	7	115	41	6	6	45	1.56
36078633--36078659	13	2.1	13	100	0	54	7	44	7	40	1.60
36084541--36084662	40	3.1	40	91	3	187	37	23	0	38	1.55
36085605--36085662	15	3.9	14	72	14	53	31	0	1	67	1.01
36085605--36085671	24	2.9	23	76	8	64	32	1	1	64	1.12
36089938--36090043	52	2.0	52	96	0	194	44	7	19	28	1.78
36090561--36090633	38	1.9	37	86	8	103	45	1	21	31	1.61
36096549--36096594	18	2.5	18	86	10	58	28	2	2	67	1.14
36096884--36096993	51	2.2	51	80	8	118	64	9	22	3	1.38
36099443--36099467	10	2.5	10	100	0	50	84	0	0	16	0.63
36099462--36099496	18	1.9	18	94	0	61	74	2	0	22	0.95
36099443--36099498	20	2.8	20	78	5	60	76	1	0	21	0.87
36100032--36100081	18	2.7	18	93	6	82	34	0	6	60	1.21
36102113--36102151	19	2.1	19	85	4	53	38	0	2	58	1.12
36102327--36102351	10	2.5	10	100	0	50	32	0	0	68	0.90
36105848--36105894	11	4.2	11	88	2	67	23	34	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36105848--36105912	22	2.9	22	88	6	87	26	32	0	41	1.56
36105847--36105912	11	5.9	11	74	22	66	25	31	0	42	1.55
36105876--36105971	51	1.9	50	84	4	122	28	27	2	42	1.67
36108284--36108330	15	3.1	15	90	0	76	55	23	0	21	1.44
36108305--36108868	22	25.7	22	81	6	635	44	28	0	25	1.58
36108305--36108868	43	12.9	44	82	5	635	44	28	0	25	1.58
36108305--36108868	108	5.1	108	83	6	661	44	28	0	25	1.58
36108708--36108769	29	2.1	30	88	8	92	50	24	0	25	1.50
36113004--36113070	3	21.7	3	74	17	57	34	0	1	64	1.03
36113004--36113070	21	3.1	22	78	8	75	34	0	1	64	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206