genome.fa.s2.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  37  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688627--10688664	13	3.0	13	92	3	60	65	5	23	5	1.34
10689821--10689954	39	3.4	38	73	12	112	22	20	28	28	1.99
10694957--10695005	3	16.0	3	91	4	80	34	2	0	63	1.06
10695517--10695561	21	2.2	20	84	11	56	28	15	2	53	1.54
10695583--10695839	108	2.4	109	89	3	376	30	15	18	35	1.92
10696291--10696324	17	2.0	17	100	0	68	47	17	11	23	1.81
10698967--10699061	37	2.6	37	94	0	172	49	8	5	36	1.56
10699043--10699138	20	4.9	20	74	12	92	44	7	5	42	1.54
10699006--10699231	57	4.0	57	89	3	339	46	8	5	38	1.59
10699172--10699305	37	3.6	37	92	0	214	50	9	5	34	1.60
10699287--10699382	20	4.9	20	74	12	92	44	7	5	42	1.54
10699250--10699472	57	3.9	57	86	2	324	47	9	4	38	1.58
10699258--10699385	20	6.7	19	68	16	61	48	7	4	39	1.51
10698967--10699511	244	2.2	243	96	0	991	47	8	5	37	1.58
10699410--10699511	37	2.8	37	90	0	168	48	8	6	36	1.61
10699493--10699531	20	2.0	20	100	0	78	46	5	5	43	1.48
10699496--10699543	20	2.4	20	85	0	60	50	4	4	41	1.41
10699456--10699563	57	1.9	56	88	1	162	48	9	4	37	1.56
10699364--10699554	94	2.1	92	88	2	283	48	9	5	37	1.58
10699543--10699751	9	23.9	9	75	7	198	45	20	2	32	1.64
10699562--10699749	104	1.8	104	90	2	306	44	20	2	31	1.66
10699707--10699755	25	2.0	25	91	0	80	46	24	2	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10699562--10699787	104	2.2	104	85	4	296	46	19	2	31	1.63
10701873--10701913	21	2.0	21	100	0	82	31	9	14	43	1.78
10704859--10704929	21	3.4	21	82	0	88	33	19	42	4	1.71
10705878--10705907	14	2.1	14	100	0	60	46	6	6	40	1.56
10706086--10706120	18	2.0	18	88	5	54	48	8	11	31	1.69
10707213--10707280	20	3.4	19	78	15	66	52	2	20	23	1.60
10707232--10707298	21	3.2	21	78	16	61	53	5	19	20	1.66
10713752--10713783	16	2.0	16	100	0	64	43	31	0	25	1.55
10716944--10716988	22	2.0	23	86	8	65	8	13	8	68	1.38
10724148--10724184	2	18.5	2	100	0	74	51	0	0	48	1.00
10724752--10724789	21	1.9	20	89	10	60	71	2	7	18	1.23
10725908--10725981	36	2.1	36	100	0	148	33	17	21	27	1.96
10738936--10738986	22	2.2	23	93	6	86	9	11	7	70	1.33
10746661--10746698	21	1.9	20	89	10	60	71	2	7	18	1.23
10750923--10750979	26	2.2	26	96	0	105	35	19	17	28	1.94
10762598--10762722	43	2.9	43	83	7	162	28	27	14	29	1.95
10762847--10762871	13	1.9	13	100	0	50	68	16	0	16	1.22
10765078--10765113	12	3.0	12	95	0	63	36	16	30	16	1.91
10771187--10771244	27	2.1	27	81	6	64	62	20	6	10	1.50
10771632--10771679	24	2.0	24	87	0	69	27	50	14	8	1.71
10779386--10779507	23	5.3	23	86	0	181	31	27	19	21	1.97
10779386--10779505	46	2.6	46	94	0	204	31	27	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10781271--10781641	106	3.5	106	87	4	450	32	21	14	31	1.94
10783966--10784253	44	6.6	43	84	1	324	22	26	21	29	1.99
10783925--10784257	44	7.6	43	80	2	209	23	25	22	28	1.99
10791376--10791400	12	2.1	12	100	0	50	0	20	40	40	1.52
10796004--10796274	106	2.5	106	90	2	420	32	21	14	31	1.94
10804081--10804453	75	5.0	75	86	1	469	27	17	20	33	1.96
10805015--10805084	28	2.5	29	88	6	108	22	22	8	45	1.79
10806083--10806137	10	5.7	10	87	12	80	80	0	20	0	0.72
10806087--10806155	21	3.3	21	82	15	72	79	0	17	2	0.85
10806165--10806213	24	2.0	24	88	0	71	24	48	16	10	1.76
10806274--10806343	30	2.4	29	81	11	81	32	42	17	7	1.76
10806293--10806387	46	2.1	46	96	4	174	28	44	16	10	1.81
10811282--10811352	35	2.0	35	97	0	133	46	9	8	35	1.67
10818163--10818300	40	3.5	39	77	8	147	32	25	15	26	1.96
10818876--10818911	18	1.9	19	88	5	56	33	27	0	38	1.57
10819209--10819273	4	15.8	4	83	13	71	1	21	3	73	1.05
10819209--10819269	33	1.9	31	90	6	95	1	21	3	73	1.06
10819291--10819319	5	5.8	5	100	0	58	58	0	0	41	0.98
10820967--10821178	102	2.1	102	94	1	372	15	15	16	52	1.74
10823544--10823572	14	2.0	15	93	6	51	75	3	20	0	0.94
10824888--10824938	21	2.4	21	83	6	59	37	1	19	41	1.63
10825396--10825453	26	2.2	26	84	0	71	18	24	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10825483--10825547	25	2.6	25	74	11	62	16	27	23	32	1.96
10825403--10825587	73	2.5	72	77	4	199	18	26	22	32	1.97
10831837--10831888	2	26.0	2	100	0	104	50	0	0	50	1.00
10838932--10838980	17	2.8	17	76	14	55	55	4	4	36	1.38
10842468--10842518	19	2.6	20	84	9	61	58	5	0	35	1.22
10845436--10845483	19	2.4	21	76	20	57	31	8	4	56	1.48
10853688--10853733	23	2.0	22	84	12	58	34	2	4	58	1.30
10854367--10854393	2	13.5	2	100	0	54	48	0	0	51	1.00
10855920--10855958	14	2.6	15	84	8	53	66	5	2	25	1.25
10860170--10860223	11	4.8	12	76	19	62	27	29	1	40	1.67
10860164--10860223	23	2.6	22	80	19	70	28	28	1	41	1.66
10860185--10860282	51	1.9	51	87	4	144	27	23	3	45	1.67
10862100--10862139	18	2.2	18	90	0	62	20	32	7	40	1.80
10862613--10862660	25	1.9	25	100	0	96	45	0	14	39	1.45
10862568--10862698	70	1.9	70	98	0	253	38	0	12	48	1.42
10862571--10862670	25	4.2	24	69	15	84	41	0	13	46	1.43
10862575--10862714	70	2.0	70	91	2	212	40	1	13	45	1.53
10865931--10865962	2	16.0	2	100	0	64	50	0	0	50	1.00
10865945--10866006	27	2.4	26	81	5	72	46	4	9	38	1.58
10868736--10869157	125	3.4	125	88	2	668	30	22	18	28	1.97
10881463--10881498	15	2.3	16	85	9	56	25	41	8	25	1.83
10887249--10887281	7	4.7	7	100	0	66	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10892130--10892261	67	2.0	67	95	0	237	26	31	19	21	1.98
10896000--10896084	42	2.0	42	100	0	170	34	21	18	25	1.96
10900797--10900827	8	3.9	8	100	0	62	38	22	0	38	1.54
10904365--10904415	2	25.5	2	100	0	102	50	0	0	49	1.00
10905237--10905269	13	2.5	13	95	0	57	18	54	21	6	1.64
10905533--10905823	113	2.6	111	85	2	386	24	21	24	29	1.99
10905494--10905823	113	3.0	110	82	4	385	25	21	23	29	1.99
10906054--10906116	31	2.0	31	84	3	81	20	1	39	38	1.62
10908084--10908182	52	1.9	52	93	0	171	45	6	17	31	1.72
10910340--10910471	40	3.4	39	75	9	108	31	23	18	26	1.98
10910584--10910630	24	2.0	24	84	16	62	51	17	0	31	1.46
10911405--10911436	8	4.0	8	100	0	64	50	0	0	50	1.00
10914343--10914396	24	2.2	24	90	6	83	51	7	3	37	1.48
10915819--10916149	113	3.0	111	87	3	459	24	22	24	29	1.99
10916380--10916442	31	2.0	32	87	3	92	19	1	41	38	1.61
10918987--10919191	52	4.1	52	72	21	186	46	14	4	34	1.65
10919059--10919116	21	2.8	20	76	7	62	41	15	5	37	1.70
10919121--10919157	15	2.7	14	84	15	51	56	13	0	29	1.37
10919034--10919211	96	1.9	96	92	1	304	46	15	2	35	1.60
10919121--10919158	7	5.6	7	82	17	53	57	13	0	28	1.36
10919121--10919209	22	4.1	21	78	13	85	48	15	1	34	1.53
10919177--10919201	12	2.1	12	100	0	50	52	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10919204--10919770	92	6.2	92	98	1	1068	40	6	4	48	1.51
10919204--10919770	183	3.1	184	97	1	1077	40	6	4	48	1.51
10919204--10919770	275	2.1	275	97	0	1082	40	6	4	48	1.51
10920050--10920148	52	1.9	52	91	0	162	43	6	17	33	1.73
10922752--10922806	16	3.6	16	76	18	71	47	23	0	29	1.52
10922752--10923167	9	48.9	9	65	17	106	45	19	4	30	1.69
10922756--10922818	30	2.1	30	96	0	117	46	23	0	30	1.53
10922891--10923001	37	3.0	37	97	0	204	49	18	2	29	1.61
10922986--10923107	16	8.0	16	68	20	82	45	18	5	29	1.73
10923006--10923137	25	5.3	25	71	5	70	43	20	5	31	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206