genome.fa.s2.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  165  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49975076--49975128	27	1.9	28	84	3	72	43	1	9	45	1.47
49978612--49978668	15	3.8	15	75	6	53	68	7	0	24	1.14
49986645--49986765	50	2.4	50	81	6	140	30	18	26	24	1.98
49989210--49989234	12	2.1	12	100	0	50	48	0	0	52	1.00
49995809--49995841	14	2.3	15	89	5	50	78	0	21	0	0.75
50006285--50006385	47	2.1	47	83	3	123	38	23	16	20	1.93
50007102--50007141	11	3.6	11	93	0	62	10	2	52	35	1.48
50007240--50007386	73	2.0	73	94	1	260	49	12	26	11	1.74
50015363--50015412	3	16.7	3	100	0	100	32	34	0	34	1.58
50030295--50030376	5	15.8	5	73	14	51	20	3	1	74	1.04
50030342--50030382	16	2.5	17	76	11	50	12	7	2	78	1.06
50030316--50030382	31	2.1	32	83	8	84	16	5	1	76	1.06
50030562--50030608	19	2.5	19	82	0	58	23	4	6	65	1.33
50037350--50037390	19	2.2	19	100	0	82	19	24	26	29	1.98
50040579--50040640	27	2.3	27	86	2	81	45	20	16	17	1.86
50048021--50048052	16	1.9	17	93	6	57	56	12	0	31	1.37
50051749--50051832	42	2.0	41	86	2	114	27	16	22	33	1.96
50058131--50058193	26	2.4	26	97	0	117	42	11	7	38	1.70
50059620--50059662	20	2.2	20	91	0	68	37	18	18	25	1.94
50061500--50061548	19	2.6	18	78	12	53	63	8	2	26	1.34
50068001--50068041	22	1.9	21	85	5	55	34	2	12	51	1.52
50068008--50068048	21	1.9	22	85	5	57	34	2	14	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50071255--50071310	2	28.0	2	88	0	85	44	0	5	50	1.25
50074126--50074527	101	3.8	108	85	5	590	35	16	17	30	1.92
50074125--50074527	209	1.9	207	91	2	655	34	16	17	31	1.92
50076814--50076840	13	2.1	13	100	0	54	40	29	7	22	1.81
50082677--50082919	50	4.8	51	78	6	235	30	27	17	25	1.97
50082674--50082915	101	2.4	101	83	1	306	30	26	17	25	1.97
50084283--50084307	10	2.5	10	100	0	50	0	0	8	92	0.40
50085946--50085991	24	1.9	24	82	8	58	60	8	4	26	1.44
50086615--50086670	26	2.3	24	77	19	62	44	3	0	51	1.18
50086620--50086674	24	2.1	26	83	12	69	45	3	0	50	1.19
50086669--50086714	18	2.6	18	78	0	56	47	0	2	50	1.13
50086890--50086938	2	25.0	2	95	4	91	51	0	0	48	1.00
50097821--50097866	19	2.4	20	70	23	53	43	0	2	54	1.12
50098495--50098557	30	2.1	30	91	5	101	57	15	3	23	1.53
50102561--50102681	43	2.8	43	73	12	122	18	20	30	30	1.96
50106849--50106926	23	3.4	23	87	0	111	21	17	21	38	1.93
50110025--50110069	17	2.7	17	96	3	83	31	22	11	35	1.89
50113831--50113898	29	2.4	29	80	2	75	33	19	20	26	1.96
50113833--50113987	28	5.5	28	72	6	96	36	21	16	25	1.94
50113873--50113994	28	4.3	28	72	7	111	36	22	12	27	1.90
50114248--50114279	15	2.1	15	100	0	64	18	34	21	25	1.96
50115680--50115809	43	3.0	43	80	5	140	26	30	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50117165--50117199	16	2.2	16	94	0	61	60	14	11	14	1.60
50120323--50120478	54	2.9	54	90	2	242	21	4	24	49	1.68
50120860--50120920	10	5.9	10	75	11	52	45	6	0	47	1.28
50120853--50120909	29	1.9	30	89	7	89	50	5	0	43	1.24
50120854--50120926	30	2.4	30	80	8	87	49	5	0	45	1.25
50120853--50120928	29	2.5	30	79	8	84	48	6	0	44	1.28
50122168--50122275	41	2.6	41	94	0	180	28	25	22	23	1.99
50123437--50123478	12	3.4	12	75	18	50	28	4	40	26	1.76
50124586--50124727	27	5.3	27	79	5	155	40	19	20	19	1.91
50125083--50125141	30	1.9	31	86	3	84	18	25	23	32	1.97
50132667--50132799	26	5.2	26	83	8	164	30	20	14	34	1.92
50132667--50132797	52	2.5	52	85	8	187	31	20	14	33	1.93
50143036--50143070	18	2.0	17	88	5	52	45	0	0	54	0.99
50143304--50143352	16	3.1	16	96	0	89	22	36	4	36	1.73
50148664--50148709	23	2.0	23	87	8	67	36	21	4	36	1.74
50151354--50151398	18	2.5	18	85	7	56	44	20	17	17	1.87
50152031--50152078	22	2.2	22	88	0	69	25	14	20	39	1.91
50152045--50152112	22	3.1	22	75	8	57	27	22	14	35	1.93
50152114--50152157	23	1.9	23	85	0	61	40	18	13	27	1.88
50152251--50152343	38	2.5	38	87	1	125	31	20	26	21	1.98
50152435--50152479	18	2.6	18	85	3	56	22	15	35	26	1.94
50152535--50152609	23	3.3	22	81	7	78	36	10	22	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50152551--50152669	46	2.6	46	81	2	141	32	10	23	33	1.88
50152551--50152656	23	4.6	23	84	2	115	31	10	25	33	1.89
50152555--50152724	23	7.4	23	77	2	110	28	10	25	34	1.89
50152534--50152724	69	2.8	69	78	0	184	31	9	24	34	1.88
50188764--50188815	24	2.2	24	85	0	68	50	7	3	38	1.50
50193615--50193645	16	1.9	16	100	0	62	51	0	9	38	1.35
50195582--50195622	16	2.6	16	88	0	55	39	2	29	29	1.70
50195803--50195936	57	2.3	58	84	6	182	52	2	0	44	1.16
50195803--50195949	60	2.5	58	82	9	147	53	3	0	42	1.22
50197068--50197178	28	4.1	28	75	11	106	18	12	18	50	1.77
50202504--50202535	15	2.1	15	94	0	55	37	0	15	46	1.46
50214663--50214748	22	3.9	22	90	0	118	27	15	27	29	1.96
50230261--50230307	21	2.2	22	92	3	78	21	19	38	21	1.94
50233357--50233386	6	4.8	6	92	8	51	66	0	0	33	0.92
50233465--50233517	24	2.3	23	93	3	88	56	0	0	43	0.99
50236849--50236941	48	1.9	48	86	0	132	17	17	30	35	1.93
50239073--50239100	13	2.2	13	100	0	56	57	0	0	42	0.99
50241179--50241373	108	1.8	108	90	0	318	33	23	13	29	1.93
50246418--50246458	21	2.0	21	85	0	55	21	26	4	46	1.72
50250746--50250831	43	2.0	43	86	4	120	22	23	2	52	1.59
50253417--50253609	44	4.4	44	85	0	242	39	15	10	34	1.82
50255510--50255566	26	2.2	26	87	6	80	43	21	21	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50255719--50255868	65	2.3	65	92	0	255	36	22	20	21	1.96
50256828--50256889	31	2.0	31	81	9	74	19	19	0	61	1.35
50259376--50259535	41	3.9	41	94	0	284	28	23	21	27	1.99
50266023--50266067	23	2.0	23	82	8	56	33	4	11	51	1.58
50273905--50274078	41	4.3	41	82	2	199	38	19	20	21	1.94
50274134--50274237	44	2.4	44	86	0	136	17	31	7	43	1.77
50274214--50274255	18	2.3	18	91	0	66	9	40	0	50	1.35
50276662--50276693	16	2.0	16	100	0	64	25	6	31	37	1.81
50276731--50276768	19	2.0	20	89	5	60	23	0	2	73	0.95
50276751--50276788	16	2.4	16	86	8	51	31	0	0	68	0.90
50276816--50276849	16	2.1	17	94	5	61	23	0	0	76	0.79
50283057--50283111	28	2.0	27	82	3	65	38	1	1	58	1.20
50283037--50283102	34	1.9	35	87	9	100	37	1	3	57	1.23
50286130--50287762	818	2.0	818	94	0	2890	32	15	16	35	1.90
50301058--50301095	14	2.7	14	87	0	58	65	0	28	5	1.14
50308938--50308986	20	2.5	20	75	15	57	12	22	6	59	1.55
50309189--50309368	50	3.6	50	80	6	188	21	28	22	27	1.99
50316114--50316169	29	2.0	29	89	6	89	75	8	3	12	1.17
50318605--50318670	24	2.7	25	73	13	66	30	21	10	37	1.87
50328203--50328252	23	2.1	23	82	10	57	70	0	6	24	1.10
50333390--50333416	8	3.4	8	100	0	54	48	14	0	37	1.45
50333666--50333773	21	5.1	21	86	2	130	47	18	21	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50333655--50333773	42	2.9	42	82	7	145	46	18	21	13	1.83
50336617--50336665	24	2.0	24	100	0	98	28	16	4	51	1.63
50353827--50353870	18	2.5	17	85	7	52	54	2	0	43	1.12
50353853--50353885	15	2.2	15	89	10	50	45	6	0	48	1.27
50353804--50354572	120	6.4	119	91	4	1228	51	4	0	43	1.27
50353944--50353990	18	2.6	18	90	6	69	55	2	0	42	1.12
50354155--50354220	14	4.4	14	70	22	53	59	1	1	37	1.16
50354155--50354219	18	4.2	16	77	15	57	60	1	1	36	1.16
50354187--50354232	18	2.6	18	86	6	58	50	4	2	43	1.34
50353810--50354629	363	2.3	359	88	8	1265	51	4	0	43	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206