genome.fa.s2.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  168  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51153688--51153722	18	1.9	18	88	0	52	20	0	2	77	0.90
51157919--51157958	12	3.2	12	83	13	53	77	0	10	12	0.99
51157926--51157952	14	1.9	14	100	0	54	74	0	11	14	1.08
51157999--51158030	13	2.5	13	95	5	57	71	0	6	21	1.07
51164978--51165016	18	2.1	19	90	4	62	56	5	7	30	1.49
51165588--51165626	12	3.2	12	85	7	51	56	2	0	41	1.13
51167484--51167533	16	3.2	16	78	16	59	34	4	2	60	1.27
51167481--51167545	15	4.3	15	73	19	55	38	4	3	53	1.37
51167544--51167596	24	2.2	25	83	10	65	45	5	3	45	1.45
51174173--51174605	69	6.3	69	93	0	731	45	19	8	26	1.79
51174176--51174605	208	2.1	207	92	0	725	45	20	8	25	1.80
51175366--51175522	41	3.8	41	85	0	215	33	26	19	20	1.97
51176389--51176509	5	24.2	5	100	0	242	59	0	0	40	0.97
51186591--51186785	51	3.8	51	81	6	209	27	14	26	32	1.95
51186593--51186786	102	1.9	102	85	4	266	26	14	26	32	1.95
51188190--51188243	6	9.0	6	95	0	90	62	0	20	16	1.32
51188351--51188425	26	2.9	26	84	2	89	46	9	13	30	1.74
51193016--51193106	36	2.6	36	83	1	112	35	36	12	16	1.86
51196875--51196920	15	3.2	15	71	22	53	30	8	8	52	1.62
51196864--51196920	28	2.0	28	96	0	105	33	7	8	50	1.60
51202747--51202833	43	2.0	43	100	0	174	35	4	20	39	1.73
51203072--51203112	21	1.9	22	85	5	57	17	4	2	75	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51228725--51228749	9	2.8	9	100	0	50	36	36	28	0	1.58
51251886--51252017	39	3.4	39	83	4	167	28	6	21	44	1.75
51254559--51254741	42	4.4	42	82	0	204	25	20	22	31	1.98
51261560--51261598	15	2.5	15	87	4	51	35	5	0	58	1.20
51262338--51262383	23	2.0	23	91	4	76	30	4	0	65	1.12
51263003--51263041	2	20.0	2	94	5	71	48	0	0	51	1.00
51271172--51271241	27	2.6	29	80	17	96	42	12	14	30	1.83
51271541--51271679	68	2.0	68	98	0	269	48	5	2	43	1.42
51271781--51271856	20	3.8	20	73	16	77	57	3	2	35	1.31
51271709--51271857	20	7.5	19	67	21	74	58	4	1	35	1.27
51272392--51272666	20	13.4	20	67	13	107	32	4	5	58	1.38
51272392--51272562	10	17.2	10	69	7	89	28	4	5	60	1.40
51272603--51272663	10	5.8	10	73	9	50	32	3	3	60	1.29
51273078--51273165	9	9.7	9	77	13	83	35	1	1	62	1.10
51273078--51273165	19	4.8	19	74	20	82	35	1	1	62	1.10
51273106--51273165	11	5.5	11	78	21	56	35	0	0	65	0.93
51275614--51275712	41	2.4	40	88	5	144	31	27	15	26	1.95
51279415--51279456	18	2.3	18	87	0	66	16	28	11	42	1.84
51279485--51279860	165	2.3	165	91	0	565	23	21	17	37	1.94
51280222--51280284	18	3.5	18	82	8	74	22	26	9	41	1.84
51280232--51280303	18	4.0	18	81	3	56	25	23	6	44	1.78
51280502--51281498	192	5.0	193	79	8	957	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51280902--51281493	210	2.8	209	86	2	778	22	22	16	38	1.92
51281561--51281610	18	2.8	18	87	0	64	24	26	10	40	1.86
51282375--51282410	18	2.0	18	88	0	54	27	25	11	36	1.90
51283085--51287569	900	5.0	899	94	1	7743	26	18	15	40	1.90
51288279--51288320	18	2.3	18	87	0	57	16	35	14	33	1.89
51288133--51288601	198	2.4	198	88	2	683	25	28	15	30	1.96
51288560--51288635	33	2.3	33	86	0	107	26	23	19	30	1.98
51288744--51289114	198	1.9	198	92	0	625	26	29	14	29	1.95
51292511--51292553	22	2.0	23	86	9	63	48	4	13	32	1.63
51293599--51293716	55	2.1	55	92	1	191	33	18	23	24	1.97
51296242--51296316	35	2.1	35	100	0	150	20	18	6	54	1.65
51297338--51297403	20	3.3	20	82	0	87	16	21	21	40	1.91
51300529--51300613	38	2.3	38	81	6	102	21	21	15	42	1.89
51300707--51300768	20	3.1	20	73	0	70	19	22	22	35	1.96
51300707--51300789	40	2.1	40	83	0	103	18	21	24	36	1.95
51302108--51302202	26	3.5	26	81	4	109	29	27	15	27	1.96
51312214--51312243	16	1.9	16	93	6	53	50	20	0	30	1.49
51313383--51313478	25	3.8	25	79	10	106	29	16	25	29	1.97
51318949--51319018	13	5.3	12	74	16	50	42	1	24	31	1.63
51318949--51319007	27	2.2	26	84	3	73	44	0	25	30	1.55
51321611--51321637	14	1.9	14	100	0	54	14	25	22	37	1.93
51327674--51327874	28	7.2	28	86	0	240	35	12	26	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51327674--51327874	84	2.4	84	88	1	278	35	12	26	25	1.92
51327710--51327902	28	7.0	27	81	8	96	32	11	27	27	1.92
51333147--51333181	15	2.2	16	90	5	54	37	22	0	40	1.55
51334289--51334315	14	1.9	14	100	0	54	22	48	7	22	1.75
51337260--51337297	10	3.6	10	86	13	58	36	0	2	60	1.11
51339853--51339888	6	6.0	6	93	0	63	66	30	0	2	1.06
51352644--51352693	20	2.7	19	80	20	61	54	2	2	42	1.23
51353997--51354070	37	2.0	37	100	0	148	32	13	13	40	1.84
51358021--51358192	92	1.9	92	97	0	326	34	11	21	32	1.89
51362740--51362786	17	2.8	17	84	9	69	74	0	25	0	0.82
51365863--51366099	50	4.7	50	83	2	296	27	22	29	21	1.99
51368804--51369431	51	12.5	51	82	3	660	31	15	23	29	1.96
51369878--51369919	15	2.9	15	86	6	61	69	11	0	19	1.19
51370993--51371112	3	40.0	3	96	0	150	32	7	0	59	1.31
51386290--51386370	25	3.2	25	84	3	101	28	16	30	24	1.96
51386300--51386372	25	2.9	25	93	0	119	30	13	32	23	1.93
51388101--51388136	18	2.0	18	94	0	63	36	33	5	25	1.79
51414376--51414412	9	4.1	9	92	0	65	45	13	10	29	1.77
51416617--51416646	13	2.3	13	100	0	60	56	10	6	26	1.57
51417455--51417490	18	1.9	19	94	5	65	36	0	0	63	0.94
51418236--51418288	25	2.2	25	93	3	90	56	0	0	43	0.99
51418235--51418440	25	8.3	25	64	25	89	52	0	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51418343--51418435	33	2.8	33	77	9	107	54	2	1	41	1.19
51418443--51418490	23	2.1	23	88	7	71	37	0	0	62	0.95
51418501--51418562	32	1.9	32	86	0	88	56	1	1	40	1.19
51418532--51418584	24	2.2	24	86	10	72	54	1	1	41	1.22
51418521--51418587	25	2.7	27	77	15	81	56	1	1	40	1.17
51418197--51418663	147	3.1	148	95	0	810	49	1	1	47	1.17
51418590--51418637	23	2.1	23	84	7	62	37	2	0	60	1.09
51418557--51418707	81	1.9	81	86	5	216	46	1	1	50	1.21
51418917--51418948	16	1.9	17	93	6	57	21	21	6	50	1.71
51419746--51419792	7	6.7	7	100	0	94	44	40	0	14	1.46
51421824--51421890	3	22.3	3	100	0	134	0	32	0	67	0.91
51422164--51422210	19	2.5	19	100	0	94	19	29	29	21	1.97
51423422--51423597	33	5.3	33	72	5	104	27	23	17	31	1.97
51423374--51423635	101	2.6	100	87	2	364	25	24	17	32	1.97
51424056--51424131	38	2.0	38	100	0	152	18	26	10	44	1.82
51426537--51426589	25	2.0	27	92	7	92	32	0	3	64	1.12
51426543--51426597	26	2.2	25	83	9	67	34	0	3	61	1.13
51426554--51426599	20	2.3	20	78	17	51	32	0	2	65	1.05
51428675--51428699	7	3.6	7	100	0	50	24	0	0	76	0.80
51428675--51428717	14	2.8	15	86	10	52	25	2	0	72	0.97
51428776--51428833	25	2.2	27	87	9	84	27	1	3	67	1.17
51430310--51430362	23	2.3	22	84	12	63	62	3	5	28	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51430319--51430371	25	2.2	24	87	12	74	66	5	5	22	1.35
51430815--51430866	24	2.2	24	96	0	95	30	36	7	25	1.84
51434416--51434462	23	1.9	24	83	12	60	34	19	4	42	1.70
51439419--51439473	28	1.9	29	85	3	76	52	14	14	18	1.74
51440805--51440891	21	4.1	20	76	7	66	37	21	21	18	1.94
51440845--51440890	23	2.0	23	95	0	83	41	19	21	17	1.90
51440805--51440891	44	2.0	41	82	6	102	37	21	21	18	1.94
51441508--51441549	3	14.0	3	100	0	84	66	0	0	33	0.92
51442182--51442253	5	15.2	5	72	21	57	63	1	0	34	1.03
51442182--51442254	15	5.1	14	76	20	71	64	1	0	34	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206