genome.fa.s2.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  203  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61463463--61463541	16	5.0	16	76	13	74	44	16	1	37	1.56
61463607--61463670	23	3.0	22	72	21	64	46	20	1	31	1.60
61463808--61463847	12	3.3	12	92	0	71	50	15	0	35	1.44
61468820--61468915	21	4.4	21	72	12	77	37	16	42	3	1.64
61468875--61468912	12	3.2	12	96	0	67	42	15	39	2	1.61
61469198--61469231	15	2.3	15	94	0	59	8	5	26	58	1.51
61469349--61469553	42	4.8	43	89	5	303	25	24	20	29	1.99
61479203--61479236	18	1.9	17	88	5	50	52	0	5	41	1.25
61480149--61480197	23	2.1	23	88	0	71	46	14	12	26	1.79
61480372--61480485	29	3.9	29	87	1	156	34	21	5	39	1.76
61480726--61480756	16	1.9	16	93	0	53	70	0	29	0	0.87
61481958--61482006	17	2.9	16	82	11	62	28	10	14	46	1.77
61481927--61482042	18	6.7	17	70	14	76	31	11	10	47	1.73
61481958--61482076	36	3.5	35	78	13	97	32	10	11	44	1.76
61488033--61488105	14	5.1	14	76	17	71	86	13	0	0	0.58
61488036--61488102	10	6.8	10	81	8	84	86	13	0	0	0.57
61488033--61488114	25	3.3	24	85	11	112	85	12	2	0	0.70
61488033--61488120	13	6.9	13	76	15	69	82	12	3	1	0.84
61488033--61488102	1	70.0	1	73	0	59	87	12	0	0	0.55
61488033--61488105	13	5.8	13	76	11	80	86	13	0	0	0.58
61488989--61489498	78	6.7	78	85	6	624	25	17	21	35	1.95
61488989--61489498	231	2.2	227	86	6	674	25	17	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61488990--61489498	153	3.3	150	83	7	614	25	17	21	35	1.95
61489701--61489814	29	3.9	29	89	1	165	34	20	5	40	1.75
61489701--61489814	59	1.9	58	87	5	167	34	20	5	40	1.75
61490055--61490085	16	1.9	16	93	0	53	70	0	29	0	0.87
61490310--61490365	19	2.9	19	81	5	58	80	14	5	0	0.88
61490501--61490564	11	5.7	11	77	3	56	78	1	20	0	0.84
61490687--61490711	9	2.8	9	100	0	50	20	12	12	56	1.67
61490721--61490758	16	2.3	17	86	4	51	23	0	2	73	0.95
61490924--61490965	21	2.0	20	90	4	66	35	14	9	40	1.78
61490924--61490965	20	2.1	19	86	8	57	35	14	9	40	1.78
61491071--61491139	36	1.9	35	88	2	102	28	14	11	44	1.80
61491120--61491212	36	2.6	35	81	3	105	30	13	7	48	1.71
61491071--61491268	17	11.4	17	70	11	107	31	13	8	47	1.71
61491198--61491265	32	2.1	32	86	5	93	30	10	7	51	1.63
61491372--61491475	36	3.0	34	74	18	106	32	11	11	44	1.77
61494741--61494856	58	2.0	58	89	3	180	42	13	17	26	1.87
61495289--61495387	52	1.9	52	91	4	164	39	11	15	34	1.82
61499017--61499114	19	4.8	19	84	13	115	36	7	16	39	1.76
61499018--61499114	40	2.4	41	87	6	135	37	7	15	40	1.75
61499070--61499128	23	2.7	22	79	7	66	37	3	16	42	1.66
61499049--61499128	21	3.7	23	80	12	73	37	3	16	42	1.66
61499827--61499942	51	2.3	52	80	7	132	31	6	6	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61503219--61503287	31	2.3	29	77	20	70	40	5	0	53	1.25
61508639--61508677	4	9.8	4	88	0	60	28	2	23	46	1.65
61510920--61510960	15	2.7	15	88	11	57	70	0	9	19	1.14
61512726--61512778	25	2.1	25	100	0	106	43	7	11	37	1.69
61512932--61513012	28	2.9	28	76	21	89	64	2	1	32	1.15
61513580--61513633	26	2.1	26	82	3	65	11	12	14	61	1.58
61515861--61515888	5	5.6	5	100	0	56	57	0	0	42	0.99
61522577--61522704	64	2.0	64	98	0	247	42	17	11	28	1.84
61544519--61544565	16	2.9	17	84	9	62	40	4	2	53	1.32
61544505--61544565	16	3.8	16	82	8	61	42	3	4	49	1.40
61545024--61545062	20	2.0	21	90	10	64	35	20	12	30	1.90
61548629--61548689	31	2.0	31	93	0	104	54	19	1	24	1.54
61548990--61549034	23	2.0	23	87	12	67	44	26	8	20	1.80
61553787--61553814	2	14.0	2	100	0	56	50	0	0	50	1.00
61557537--61557569	2	17.0	2	87	6	50	45	0	3	51	1.16
61561142--61561179	2	19.5	2	94	5	69	50	0	0	50	1.00
61561864--61561924	28	2.2	28	100	0	122	36	21	32	9	1.86
61570660--61570705	2	23.0	2	100	0	92	50	0	0	50	1.00
61572858--61572919	30	2.1	30	87	0	88	53	14	6	25	1.65
61572958--61573007	22	2.3	22	79	6	57	58	8	18	16	1.62
61580906--61580993	16	5.5	16	73	16	58	42	15	9	32	1.79
61580936--61580978	17	2.7	15	80	13	50	44	18	0	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61591790--61591842	7	7.6	7	76	16	56	18	13	0	67	1.22
61591813--61591842	13	2.3	13	100	0	60	13	13	0	73	1.10
61604613--61604802	95	2.0	95	93	0	326	38	18	15	26	1.91
61606811--61606849	20	2.0	20	84	0	51	38	2	0	58	1.12
61609926--61609995	15	4.7	14	72	15	52	52	5	1	40	1.34
61616661--61616694	17	2.1	16	88	5	50	58	5	0	35	1.22
61616795--61616846	19	2.7	20	85	8	63	34	1	7	55	1.39
61618239--61618264	2	13.0	2	100	0	52	50	0	0	50	1.00
61627745--61628158	216	1.9	216	80	3	474	33	10	21	34	1.88
61628397--61628455	28	2.2	27	79	8	66	38	6	3	50	1.45
61629475--61629510	18	2.0	18	89	10	56	36	0	5	58	1.22
61631266--61631339	27	2.8	26	74	12	69	33	33	10	21	1.88
61631369--61631406	20	1.9	20	88	0	58	18	5	34	42	1.73
61637509--61637583	6	13.2	6	77	16	70	0	60	0	40	0.97
61637515--61637585	8	8.9	8	81	17	85	0	59	0	40	0.98
61637513--61637590	10	8.2	10	84	11	110	0	58	0	41	0.98
61637511--61637587	18	4.4	18	88	6	113	0	58	0	41	0.98
61638298--61638325	8	3.5	8	100	0	56	39	10	0	50	1.37
61641967--61641994	6	4.7	6	100	0	56	82	0	0	17	0.68
61644370--61645255	195	4.6	192	82	5	847	26	8	21	44	1.80
61649847--61649891	24	1.9	23	86	4	63	28	0	0	71	0.87
61655432--61655466	9	3.8	9	88	3	52	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61655838--61655867	2	15.0	2	100	0	60	50	0	50	0	1.00
61658835--61658898	21	3.1	20	77	6	74	37	25	20	17	1.93
61662195--61662221	5	5.4	5	100	0	54	18	37	44	0	1.50
61668743--61668817	31	2.4	31	82	12	84	28	22	2	46	1.65
61669747--61669786	21	1.9	21	89	0	62	55	5	5	35	1.44
61681582--61681613	13	2.5	13	94	0	55	43	18	6	31	1.75
61683667--61683783	59	2.0	59	93	0	198	31	13	17	36	1.89
61684086--61684116	3	10.3	3	100	0	62	67	0	32	0	0.91
61694106--61694133	6	4.7	6	100	0	56	17	0	35	46	1.49
61704878--61704957	28	2.7	31	75	16	89	41	18	2	37	1.64
61704878--61704988	30	3.8	30	74	11	86	40	17	7	35	1.77
61706973--61707189	108	2.0	108	100	0	434	57	4	10	27	1.51
61709322--61709652	168	2.0	168	91	0	536	24	28	21	25	1.99
61710696--61710727	16	1.9	17	93	6	57	43	0	0	56	0.99
61710726--61710765	16	2.5	16	91	0	62	47	2	7	42	1.45
61710701--61710750	22	2.3	22	85	0	64	52	2	2	44	1.24
61710838--61710865	9	3.1	9	100	0	56	32	0	10	57	1.33
61710754--61710963	68	3.1	68	95	1	370	40	4	9	45	1.56
61710906--61710933	9	3.1	9	100	0	56	32	0	10	57	1.33
61711030--61711073	24	1.9	24	90	9	74	61	2	0	36	1.09
61718887--61718946	27	2.3	26	83	11	77	26	5	0	68	1.10
61718940--61718980	21	2.0	21	95	0	73	31	2	0	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61718940--61718987	21	2.2	22	88	3	71	29	2	4	64	1.23
61719819--61719855	12	3.2	12	84	7	58	75	2	0	21	0.92
61719819--61719865	21	2.1	22	88	7	69	72	4	2	21	1.12
61719828--61719865	11	3.5	11	82	7	51	73	5	2	18	1.14
61720724--61720773	20	2.5	20	74	3	57	58	0	2	40	1.10
61722458--61722505	3	16.3	3	95	4	89	31	0	0	68	0.90
61723509--61723680	91	1.9	94	89	6	271	20	12	15	51	1.76
61723582--61723781	112	1.8	110	87	4	303	22	10	15	53	1.71
61723799--61724106	110	2.9	106	82	7	363	25	10	12	52	1.69
61727414--61727723	111	2.8	110	88	1	428	24	13	13	49	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206