genome.fa.s2.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  122  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36503102--36503224	35	3.5	35	85	0	147	30	13	16	39	1.87
36504274--36504338	22	3.0	22	81	4	78	43	15	23	18	1.88
36504270--36504343	22	3.3	21	77	5	67	43	17	21	17	1.88
36504335--36504473	32	4.4	30	77	9	100	38	18	18	23	1.93
36504384--36504473	32	2.8	32	91	0	135	37	22	18	21	1.94
36504645--36504753	24	4.5	24	81	4	112	47	20	7	24	1.75
36504772--36504888	27	4.4	27	73	5	94	26	15	17	40	1.90
36518741--36518784	22	2.1	21	84	12	56	36	11	20	31	1.88
36527286--36527528	30	8.1	29	72	8	132	24	25	13	37	1.91
36527329--36527405	29	2.5	31	75	8	86	18	24	11	45	1.82
36527299--36527520	90	2.5	89	80	5	232	23	26	12	37	1.90
36527299--36527529	60	3.9	59	72	9	182	23	25	12	37	1.90
36532156--36532186	8	4.0	8	91	8	55	25	0	0	74	0.82
36533756--36533817	20	3.0	20	72	9	52	51	14	4	29	1.63
36534239--36534289	26	1.9	27	84	11	70	19	11	13	54	1.69
36537062--36537108	13	3.6	12	81	18	58	70	0	2	27	0.99
36537062--36537117	27	2.1	27	86	3	78	66	0	5	28	1.14
36543888--36544030	77	1.9	77	93	0	250	24	15	18	41	1.89
36544601--36544643	22	1.9	23	86	13	63	44	4	4	46	1.45
36545466--36545518	26	2.0	27	85	10	74	52	0	1	45	1.11
36545927--36545989	30	2.1	30	93	0	108	26	7	33	31	1.85
36549732--36549882	41	3.7	41	93	0	257	18	31	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36549732--36549879	21	7.2	21	67	13	110	18	32	17	31	1.95
36549738--36549882	20	7.1	20	67	13	98	17	31	17	33	1.94
36553476--36553543	35	1.9	35	87	0	100	29	23	4	42	1.73
36553513--36553546	16	2.1	16	94	0	59	26	20	8	44	1.81
36561497--36561535	19	2.1	19	90	0	60	30	10	10	48	1.70
36561516--36561605	35	2.6	35	96	0	162	34	10	12	43	1.76
36567949--36567987	19	2.1	19	95	0	69	28	10	12	48	1.74
36567928--36568029	54	1.9	53	90	6	161	32	12	12	42	1.81
36571005--36571058	28	1.9	28	88	0	81	24	20	24	31	1.98
36571427--36571800	81	4.6	80	85	4	443	18	16	20	43	1.88
36571427--36571803	27	14.0	27	84	8	380	18	16	20	43	1.88
36572371--36572431	24	2.5	24	81	2	68	26	42	1	29	1.65
36581595--36581676	3	27.3	3	94	0	146	35	0	0	64	0.94
36584944--36585186	51	4.8	51	76	10	223	30	25	17	26	1.97
36584939--36585182	101	2.4	100	86	3	337	30	24	18	27	1.98
36588183--36588457	137	2.0	138	82	3	340	30	27	20	21	1.98
36593332--36593411	41	2.0	41	84	0	106	42	21	15	21	1.88
36594466--36594558	48	1.9	48	95	0	168	9	23	16	50	1.74
36598807--36598993	50	3.8	50	77	10	179	21	26	23	28	1.99
36599137--36599190	28	1.9	28	92	0	90	33	25	24	16	1.96
36599428--36599642	32	6.7	32	79	5	204	36	20	20	21	1.95
36599435--36599643	64	3.3	64	80	7	255	37	21	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36599428--36599642	96	2.2	96	81	4	254	36	20	20	21	1.95
36599686--36599750	27	2.5	26	76	14	71	32	20	24	23	1.98
36599825--36599871	24	1.9	25	95	4	87	48	27	8	14	1.73
36599918--36600007	26	3.4	27	80	8	89	21	25	21	32	1.98
36606057--36606093	18	2.1	18	100	0	74	21	16	10	51	1.74
36618218--36618246	15	1.9	15	100	0	58	20	13	27	37	1.91
36627008--36627053	21	2.2	21	88	7	67	71	0	19	8	1.11
36627082--36627170	33	2.8	32	77	13	92	56	5	28	10	1.55
36636230--36636330	52	1.9	52	95	0	184	26	18	21	32	1.97
36643689--36644273	295	2.0	295	95	0	1062	27	16	18	36	1.93
36654387--36654478	47	2.0	47	91	0	148	34	19	10	34	1.87
36656845--36656869	12	2.1	12	100	0	50	32	0	24	44	1.54
36664384--36664489	12	8.8	12	68	12	56	7	21	1	68	1.24
36664384--36664439	6	9.8	6	82	7	55	7	17	0	75	1.03
36664384--36664429	15	2.8	16	83	12	58	6	17	0	76	1.00
36664392--36664519	57	2.2	57	90	2	195	8	23	3	64	1.36
36665497--36665586	46	2.0	46	97	0	171	34	22	18	24	1.96
36668414--36668478	21	3.1	21	77	18	73	9	18	1	70	1.21
36669860--36669952	46	2.0	46	95	0	168	32	22	21	23	1.98
36673098--36673144	18	2.6	18	80	6	51	10	25	2	61	1.39
36673297--36673340	18	2.4	18	80	0	52	13	22	4	59	1.53
36673422--36673473	6	8.5	6	79	12	61	3	17	1	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36673421--36673474	13	4.5	12	80	15	67	3	20	1	74	1.07
36673424--36673476	24	2.2	24	93	0	88	3	18	1	75	1.05
36674670--36674759	27	3.3	27	85	0	135	21	16	22	40	1.92
36674683--36674799	27	4.4	27	75	6	94	25	17	18	38	1.92
36674740--36674794	26	2.1	26	82	0	65	30	12	18	38	1.88
36675934--36675978	24	2.0	23	86	8	65	26	40	2	31	1.68
36682443--36682499	10	5.6	10	72	4	51	21	22	17	38	1.93
36682437--36682484	20	2.5	20	75	3	53	27	22	16	33	1.96
36687686--36687734	18	2.9	16	77	19	55	73	4	4	18	1.15
36687688--36687735	25	1.9	25	83	8	62	72	4	4	18	1.17
36688636--36688696	31	2.0	31	100	0	122	16	34	13	36	1.87
36688639--36688706	31	2.2	31	89	5	102	19	36	11	32	1.88
36689381--36689429	25	1.9	26	91	4	82	48	0	0	51	1.00
36690801--36690867	34	2.0	34	90	0	107	32	16	8	41	1.79
36700145--36700397	126	2.0	126	96	0	470	29	15	16	38	1.90
36704390--36704456	28	2.4	28	90	5	100	29	25	20	23	1.99
36704949--36705080	27	4.9	27	74	7	124	20	18	19	41	1.90
36704947--36705080	54	2.5	54	85	0	178	20	17	20	41	1.91
36726614--36726982	103	3.6	103	92	3	591	30	29	20	19	1.97
36726854--36726903	25	2.0	25	96	0	91	30	32	24	14	1.94
36727145--36727202	27	2.2	27	87	3	82	31	27	6	34	1.83
36734960--36735223	102	2.6	103	93	1	433	31	29	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36735126--36735264	43	3.5	43	73	18	154	34	27	15	22	1.94
36735124--36735299	76	2.3	76	91	1	273	34	28	17	19	1.95
36737734--36737896	51	3.2	52	83	6	215	25	25	12	35	1.92
36737748--36737896	54	2.9	51	82	5	199	26	24	14	34	1.94
36740242--36740361	64	1.9	64	82	0	150	35	5	24	35	1.79
36742379--36742549	69	2.4	69	79	9	177	36	14	12	36	1.84
36742495--36742648	69	2.2	69	77	3	166	37	12	11	38	1.81
36743827--36744167	62	5.5	61	82	4	360	23	26	25	24	2.00
36744860--36744902	21	2.0	21	86	0	59	65	2	25	6	1.30
36744866--36744927	27	2.2	30	82	8	76	69	1	22	6	1.20
36746719--36746871	22	7.0	22	90	0	225	32	14	26	26	1.94
36762033--36762082	6	9.0	6	85	10	54	4	16	0	80	0.87
36768806--36768876	22	3.2	22	73	11	63	18	1	32	47	1.57
36768818--36768893	23	3.3	23	76	7	66	19	2	31	46	1.64
36771241--36771311	36	2.0	36	97	0	133	36	22	19	21	1.95
36775626--36775722	6	16.2	6	71	0	50	11	17	2	69	1.28
36775651--36775720	18	3.9	18	77	7	70	12	15	1	70	1.25
36781162--36781220	20	3.0	19	77	5	55	37	11	28	22	1.89
36781308--36781362	20	2.7	21	83	10	62	30	12	27	29	1.93
36781324--36781362	10	3.7	11	86	10	55	30	12	25	30	1.93
36782493--36782539	24	1.9	25	82	4	60	42	4	25	27	1.73
36783667--36783783	40	2.6	45	77	16	136	47	10	10	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36783690--36783775	40	2.2	40	93	0	145	45	12	10	31	1.76
36785807--36785848	16	2.6	17	77	14	52	11	19	0	69	1.19
36794327--36794370	18	2.4	19	81	11	56	20	11	2	65	1.35
36795832--36795888	20	2.8	20	78	0	60	35	17	29	17	1.93
36795842--36795910	30	2.3	30	80	7	79	34	13	33	18	1.90
36797704--36797751	10	4.6	10	94	5	78	18	0	8	72	1.08
36797716--36797760	20	2.2	20	84	7	56	22	2	6	68	1.24
36800448--36800573	40	3.2	40	90	0	207	46	14	7	30	1.73
36808026--36808059	11	3.1	11	91	0	50	70	11	0	17	1.16
36813201--36813311	39	2.9	38	81	4	132	43	11	8	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206