genome.fa.s2.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  201  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60799329--60799357	10	3.0	10	95	5	51	72	0	0	27	0.85
60800017--60800081	31	2.1	31	94	5	114	43	3	0	53	1.16
60800010--60800054	20	2.2	20	92	0	81	35	2	0	62	1.08
60801785--60801837	21	2.5	21	75	6	54	45	0	0	54	0.99
60803707--60803772	3	22.0	3	84	6	89	31	1	34	31	1.67
60808594--60808619	5	5.2	5	100	0	52	61	0	0	38	0.96
60815188--60815239	2	26.0	2	100	0	104	50	0	0	50	1.00
60815438--60815483	2	23.0	2	100	0	92	50	0	0	50	1.00
60824959--60824988	15	2.0	15	100	0	60	13	13	53	20	1.72
60826992--60827052	27	2.2	29	82	11	74	42	0	4	52	1.23
60828726--60828796	19	3.7	19	83	16	85	33	0	7	59	1.25
60832325--60832396	31	2.3	31	85	7	101	27	16	16	38	1.90
60836959--60837174	111	1.9	111	87	0	315	33	27	12	25	1.93
60840432--60840505	26	2.9	25	78	13	87	33	21	8	36	1.83
60840648--60840680	6	5.5	6	96	0	57	15	27	0	57	1.38
60842290--60842333	21	2.1	21	91	0	70	50	9	18	22	1.75
60842953--60843221	134	2.0	134	98	0	520	44	10	10	34	1.74
60847620--60847720	50	2.0	50	100	0	202	21	33	27	16	1.95
60847717--60847780	27	2.5	25	82	9	83	65	1	0	32	1.02
60847763--60847788	11	2.4	11	100	0	52	61	0	0	38	0.96
60852052--60852089	2	19.0	2	100	0	76	50	0	0	50	1.00
60855248--60855315	30	2.3	31	79	7	77	36	8	13	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60869992--60870033	19	2.0	20	86	13	59	66	0	0	33	0.92
60877986--60878020	17	2.0	18	94	5	63	68	0	0	31	0.90
60881408--60881477	31	2.3	31	87	5	97	40	4	5	50	1.46
60882328--60882361	14	2.5	14	90	4	52	17	0	32	50	1.47
60891659--60891688	2	15.0	2	100	0	60	50	0	0	50	1.00
60895433--60895479	19	2.5	19	73	13	51	44	0	2	53	1.12
60896847--60896920	33	2.2	33	87	0	103	48	16	5	29	1.68
60899138--60899177	21	1.9	21	89	0	62	42	12	20	25	1.86
60899435--60899502	19	3.4	19	74	14	57	39	0	5	54	1.25
60912479--60912611	64	2.1	65	92	1	223	29	27	14	29	1.95
60914049--60914082	3	11.3	3	100	0	68	67	0	0	32	0.91
60922618--60922667	5	10.2	5	81	12	59	76	2	22	0	0.89
60922620--60922667	18	2.5	19	83	10	62	77	2	20	0	0.88
60923490--60923523	15	2.3	15	100	0	68	26	5	23	44	1.76
60925055--60925111	21	2.7	22	83	5	64	3	7	24	64	1.34
60925177--60925222	23	2.0	23	95	0	83	26	4	10	58	1.50
60929164--60929238	22	3.4	22	96	0	132	29	24	13	33	1.93
60932595--60932653	29	2.0	30	83	3	75	49	13	5	32	1.64
60932696--60932723	6	4.7	6	100	0	56	50	0	0	50	1.00
60932856--60932911	29	1.9	29	96	0	103	33	0	8	57	1.30
60942464--60942488	5	5.0	5	100	0	50	40	20	40	0	1.52
60947008--60947112	11	10.4	11	70	20	61	60	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60946981--60947126	40	3.7	39	79	12	156	63	0	2	34	1.11
60947015--60947112	21	5.0	20	65	20	55	59	0	2	38	1.09
60947736--60947773	3	13.0	3	94	5	69	65	0	34	0	0.93
60947916--60947951	3	12.3	3	88	5	56	0	33	0	66	0.92
60949420--60949482	30	2.1	30	91	5	101	22	4	15	57	1.57
60952937--60952981	23	2.0	23	81	0	54	26	4	8	60	1.46
60962047--60962090	24	1.9	23	90	9	72	36	0	0	63	0.95
60962157--60962280	59	2.1	57	94	2	212	43	8	5	41	1.59
60962269--60962310	16	2.6	16	92	0	66	42	7	2	47	1.43
60962284--60962339	23	2.5	23	82	2	69	44	1	1	51	1.22
60966368--60966434	30	2.2	30	79	12	75	49	8	8	32	1.65
60967645--60967703	21	2.8	20	75	7	55	50	15	11	22	1.76
60968832--60968863	2	16.0	2	100	0	64	50	0	0	50	1.00
60969253--60969279	12	2.2	12	100	0	54	29	0	11	59	1.32
60970453--60970516	27	2.3	28	81	2	76	51	3	4	40	1.38
60976175--60976200	3	8.7	3	100	0	52	65	0	0	34	0.93
60976429--60976494	26	2.4	28	78	14	75	37	3	1	57	1.23
60977189--60977255	34	1.9	35	90	3	109	34	8	10	46	1.70
60977333--60977384	18	2.7	20	74	17	56	36	3	0	59	1.16
60978074--60978118	22	2.0	22	100	0	90	33	22	13	31	1.92
60979053--60979081	12	2.3	13	94	5	51	79	0	17	3	0.87
60984608--60984718	31	3.7	31	74	12	88	39	18	20	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60990384--60990413	14	2.1	14	100	0	60	33	16	0	50	1.46
60990897--60990951	16	3.4	16	74	0	56	43	1	1	52	1.22
60992515--60992547	3	11.0	3	93	0	57	30	0	3	66	1.06
60995267--60995312	22	2.3	22	85	14	64	19	15	21	43	1.87
60998102--60998151	16	3.2	16	72	13	50	50	2	0	48	1.12
61000037--61000242	90	2.3	91	76	5	213	24	17	16	40	1.90
61006971--61007000	15	2.0	15	93	0	51	63	0	0	36	0.95
61012576--61012607	17	1.9	17	93	6	57	56	25	3	15	1.54
61015572--61015618	23	2.0	24	83	8	60	57	0	10	31	1.33
61018613--61018646	16	2.1	16	88	0	50	29	8	14	47	1.75
61020612--61020713	50	2.1	47	85	5	132	51	10	1	35	1.48
61021893--61021952	17	3.3	19	77	11	63	51	0	6	41	1.28
61021920--61021952	17	1.9	17	100	0	66	48	0	9	42	1.35
61027231--61027269	21	1.9	20	84	5	51	38	2	0	58	1.12
61032362--61032474	51	2.2	51	84	3	138	34	12	8	44	1.73
61034120--61034174	15	3.9	14	79	9	58	36	0	1	61	1.06
61043310--61043343	18	1.9	17	94	5	59	73	2	0	23	0.97
61047371--61047428	27	2.1	28	87	9	84	36	20	22	20	1.95
61047824--61047894	37	1.9	37	97	0	133	49	0	9	40	1.36
61047830--61047898	19	3.7	19	82	5	97	52	0	10	37	1.36
61047975--61048059	27	3.2	27	81	5	93	18	28	23	29	1.98
61053361--61053650	83	3.5	81	78	11	243	41	23	5	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61053646--61053938	79	3.6	81	78	10	278	39	24	8	27	1.84
61053434--61053835	219	1.8	217	86	2	581	40	23	7	28	1.82
61057726--61057768	11	3.8	11	81	6	50	37	0	6	55	1.27
61062673--61062697	2	12.5	2	100	0	50	52	0	0	48	1.00
61063291--61063327	4	9.2	4	87	0	56	21	0	24	54	1.45
61069575--61069617	14	3.0	14	75	3	50	60	2	2	34	1.22
61074642--61074681	3	13.3	3	100	0	80	67	0	0	32	0.91
61090779--61090838	31	1.9	31	86	0	84	26	18	16	38	1.92
61095931--61095965	13	2.7	13	100	0	70	48	0	14	37	1.44
61097455--61097485	16	2.0	15	93	6	53	0	29	58	12	1.35
61097609--61097740	20	6.3	20	72	16	106	59	0	2	38	1.10
61097610--61097731	44	2.8	42	85	11	176	58	0	2	39	1.12
61097610--61097712	11	9.4	11	78	11	113	58	0	1	39	1.09
61097610--61097739	22	6.3	18	75	21	73	58	0	2	39	1.11
61106513--61106548	17	2.1	17	94	0	63	13	22	0	63	1.29
61108895--61108941	23	2.1	23	84	4	60	29	6	10	53	1.60
61109821--61109854	2	17.0	2	100	0	68	50	0	0	50	1.00
61110016--61110056	18	2.4	16	84	11	55	56	7	0	36	1.27
61110248--61110295	21	2.3	20	80	13	62	39	10	2	47	1.49
61111272--61111299	14	2.0	14	100	0	56	28	21	7	42	1.79
61112856--61112921	29	2.3	29	81	5	80	25	28	28	16	1.97
61122351--61122472	3	40.7	3	81	6	140	31	4	0	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61122493--61122541	25	2.0	24	84	7	64	34	12	2	51	1.51
61123235--61123453	108	2.0	107	88	0	321	27	14	20	37	1.91
61126071--61126101	14	2.2	14	94	0	53	48	6	0	45	1.28
61127219--61127267	3	16.3	3	82	0	62	59	0	40	0	0.98
61127881--61127914	15	2.2	16	94	5	61	2	5	11	79	1.02
61130158--61130187	6	5.0	6	95	0	51	53	0	13	33	1.40
61131100--61131494	133	2.9	133	78	5	386	32	13	21	32	1.92
61131839--61131879	20	2.0	21	85	4	57	19	4	39	36	1.73
61135308--61135414	29	3.7	29	76	8	101	34	24	2	38	1.70
61135738--61135802	22	3.0	22	84	4	78	75	6	15	3	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206