genome.fa.s2.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  147  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44731075--44731230	84	1.9	84	97	0	294	34	26	17	21	1.96
44733338--44733392	27	2.0	27	89	0	83	23	10	30	34	1.89
44733533--44733637	39	2.6	39	83	5	131	36	18	21	23	1.95
44733679--44733911	41	5.7	41	87	0	288	23	18	29	28	1.98
44734266--44734302	15	2.5	15	95	4	67	27	0	40	32	1.57
44734331--44734368	15	2.6	15	84	15	53	21	2	42	34	1.67
44734324--44734380	15	3.9	13	76	19	51	22	1	40	35	1.65
44734510--44734548	14	2.8	14	84	0	51	23	0	28	48	1.51
44734661--44734687	7	3.9	7	100	0	54	14	0	14	70	1.17
44734104--44734829	316	2.3	311	81	7	804	30	1	22	44	1.64
44737974--44738029	27	2.1	27	83	6	69	26	8	1	62	1.35
44739180--44739270	43	2.1	43	87	2	130	34	10	9	45	1.73
44739621--44739673	24	2.2	25	89	3	81	20	18	26	33	1.96
44739677--44739730	27	2.0	28	88	3	83	31	18	25	24	1.97
44745116--44745948	415	2.0	415	98	0	1621	31	17	12	38	1.87
44751284--44751391	41	2.6	41	79	2	101	35	26	18	19	1.95
44759360--44759389	15	1.9	16	93	6	53	16	33	20	30	1.94
44763566--44763615	24	2.0	24	84	3	64	50	36	4	10	1.55
44765196--44765241	14	3.2	15	77	17	53	39	2	2	56	1.24
44765250--44765288	16	2.5	16	83	4	53	28	2	2	66	1.18
44766483--44766550	33	2.1	33	97	0	127	25	11	16	47	1.80
44770852--44770891	18	2.2	19	90	4	64	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44772123--44772148	12	2.2	12	100	0	52	7	15	30	46	1.74
44772232--44772542	114	2.8	113	89	2	448	27	21	25	26	1.99
44772442--44772650	72	2.9	73	86	1	321	28	21	24	25	1.99
44773987--44774035	7	6.9	7	76	4	53	20	0	46	32	1.51
44773980--44774050	15	4.9	14	74	17	65	22	0	42	35	1.54
44774489--44774834	149	2.3	151	95	2	615	33	15	17	32	1.92
44774705--44775113	131	3.0	131	88	7	561	34	17	16	31	1.92
44774836--44775140	148	2.1	149	98	0	585	34	17	17	30	1.94
44774556--44775113	279	2.0	280	98	0	1082	34	17	17	31	1.93
44775047--44775231	91	2.0	91	95	0	334	31	18	17	31	1.95
44774899--44775379	240	2.0	240	95	0	865	33	17	16	31	1.93
44775138--44775419	149	1.9	149	90	2	451	36	17	15	30	1.92
44776689--44776747	31	1.9	31	96	0	109	15	18	18	47	1.83
44778304--44778391	43	2.1	42	82	6	106	34	9	10	46	1.69
44778694--44778879	43	4.3	43	83	3	225	18	17	31	32	1.95
44781903--44781959	9	6.4	8	77	18	51	77	1	1	19	0.95
44783729--44783789	30	2.0	30	90	0	95	13	29	32	24	1.93
44785585--44785657	6	11.7	6	75	8	56	78	6	5	9	1.10
44787751--44787890	42	3.3	42	98	0	271	17	30	30	22	1.96
44791772--44791832	30	2.0	30	83	0	77	14	31	31	22	1.94
44793926--44793965	14	2.8	14	96	3	71	7	5	25	62	1.42
44798814--44798844	15	2.1	15	93	0	53	38	9	32	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44800724--44800749	6	4.3	6	100	0	52	0	15	0	84	0.62
44804771--44804861	46	2.0	46	89	2	139	25	18	20	35	1.96
44806874--44806905	12	2.4	14	85	15	50	78	6	9	6	1.10
44813059--44813111	26	2.1	25	82	3	61	41	1	7	49	1.42
44813404--44813447	22	2.0	21	82	4	52	40	11	20	27	1.86
44813931--44814024	46	2.0	46	93	0	161	24	19	21	35	1.96
44821521--44821597	25	3.0	24	79	9	73	32	22	23	22	1.98
44834033--44834094	20	3.2	20	78	21	69	38	0	3	58	1.15
44833994--44834101	19	5.4	20	74	11	96	40	0	1	56	1.16
44834388--44834454	25	2.5	26	77	15	66	17	1	19	61	1.43
44834698--44834752	16	3.4	16	85	14	69	41	5	30	21	1.76
44836723--44836827	51	2.1	50	90	1	165	42	20	10	25	1.84
44837083--44837503	227	1.9	227	97	0	797	33	17	25	23	1.96
44840742--44840772	14	2.2	14	100	0	62	32	12	0	54	1.38
44842011--44842290	43	6.6	43	81	7	266	31	30	16	21	1.95
44842010--44842283	129	2.1	128	80	8	299	31	30	16	21	1.95
44845814--44845842	5	5.8	5	100	0	58	82	0	0	17	0.66
44846895--44846940	23	2.0	23	83	8	58	19	0	6	73	1.04
44847620--44847644	7	3.6	7	100	0	50	44	56	0	0	0.99
44847653--44847800	74	2.0	74	89	0	224	47	22	1	27	1.59
44847882--44847912	14	2.1	15	94	5	55	38	32	0	29	1.57
44848292--44848516	41	5.2	41	86	10	308	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44848348--44848486	50	3.0	49	88	11	213	27	26	24	21	1.99
44848307--44848486	91	2.0	91	97	0	342	28	26	23	21	1.99
44848570--44848683	40	2.9	40	85	3	142	21	22	22	33	1.97
44852135--44852180	18	2.6	18	82	0	56	76	2	6	15	1.09
44856032--44856070	21	1.9	21	84	5	53	64	0	5	30	1.15
44856606--44856664	25	2.4	25	88	5	84	52	3	20	23	1.61
44858565--44858618	25	2.2	25	93	0	90	48	7	20	24	1.75
44858749--44858779	13	2.4	13	94	0	53	67	3	9	19	1.33
44860730--44860836	25	4.3	25	78	4	108	32	20	18	28	1.96
44862147--44862178	2	16.5	2	93	6	57	46	0	0	53	1.00
44863742--44863847	41	2.6	41	92	0	176	22	21	25	30	1.99
44863976--44864011	2	18.0	2	100	0	72	50	0	0	50	1.00
44864164--44864216	2	26.5	2	100	0	106	50	0	0	49	1.00
44865250--44865296	23	2.1	22	84	4	58	34	4	6	55	1.45
44870376--44870404	13	2.2	13	100	0	58	79	0	6	13	0.93
44871610--44871634	13	1.9	13	100	0	50	40	0	20	40	1.52
44871624--44871676	27	2.0	27	82	14	65	43	1	20	33	1.63
44875309--44875375	32	2.1	33	97	2	127	26	23	17	31	1.97
44883481--44883515	16	2.2	15	90	10	52	0	11	5	82	0.82
44894827--44894856	11	2.7	11	94	0	51	50	26	0	23	1.50
44900883--44900912	15	2.0	15	100	0	60	53	6	6	33	1.53
44901616--44901709	25	3.7	25	78	5	91	21	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44908473--44908565	39	2.4	39	88	1	132	30	18	15	36	1.91
44911548--44911627	27	3.0	27	83	8	94	31	18	11	38	1.86
44927353--44927388	16	2.3	16	90	4	56	44	0	19	36	1.51
44933930--44933983	25	2.2	25	80	12	58	62	1	0	35	1.06
44938692--44938757	5	13.2	5	79	6	62	42	16	3	37	1.64
44938697--44938757	25	2.4	25	83	5	70	44	16	3	36	1.64
44938973--44939041	29	2.4	28	76	11	68	42	20	2	34	1.67
44941467--44941709	50	4.8	50	92	0	396	20	30	23	25	1.98
44941804--44941834	13	2.4	13	94	0	53	54	12	0	32	1.38
44943648--44943728	30	2.7	30	79	12	103	56	0	9	33	1.32
44945255--44945327	5	15.0	5	81	16	64	63	4	2	30	1.27
44945258--44945295	19	2.0	20	94	5	69	63	0	5	31	1.17
44951028--44951055	3	9.3	3	100	0	56	32	0	35	32	1.58
44951060--44951110	3	17.0	3	91	0	84	29	0	3	66	1.09
44962932--44963113	51	3.6	49	81	8	186	28	15	25	30	1.96
44962932--44963120	101	1.9	102	85	1	263	29	15	25	30	1.96
44963311--44963383	37	1.9	38	86	2	103	42	2	23	31	1.68
44965581--44965664	42	2.0	42	97	0	159	28	20	11	39	1.88
44974623--44974653	15	2.1	15	100	0	62	45	12	6	35	1.68
44975834--44975879	20	2.3	21	81	11	60	28	13	13	45	1.80
44984418--44984497	39	2.1	39	95	0	142	32	18	16	32	1.93
44984550--44984666	62	1.9	61	86	5	166	50	3	4	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44994674--44994717	19	2.4	18	82	14	54	43	0	6	50	1.29
45012867--45012969	44	2.3	44	83	3	127	32	22	23	22	1.98
45012894--45013404	44	10.9	45	65	18	159	32	17	21	27	1.96
45012894--45013168	142	1.9	142	96	0	514	32	19	21	26	1.97
45013062--45013446	98	4.0	98	84	7	531	33	16	21	28	1.95
45012896--45013212	142	2.2	142	90	1	510	32	19	21	27	1.97
45013258--45013428	88	1.9	88	91	2	281	32	15	22	29	1.95
45013291--45013428	44	3.1	44	71	13	122	33	13	23	29	1.93
45015001--45015059	25	2.2	28	82	17	72	23	6	6	62	1.44
45015106--45015144	13	2.9	13	82	17	53	30	2	0	66	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206