genome.fa.s2.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  92  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26688480--26688706	87	2.6	88	86	2	305	37	12	26	23	1.90
26688495--26688724	29	7.9	29	81	3	239	36	12	27	23	1.90
26689735--26689765	13	2.4	13	94	0	53	0	16	48	35	1.46
26693665--26693698	9	3.8	9	88	0	50	55	2	0	41	1.15
26693689--26693722	17	1.9	18	88	5	52	38	5	2	52	1.41
26696834--26696868	18	1.9	18	88	0	52	17	37	11	34	1.85
26697713--26697753	18	2.3	18	86	0	55	46	17	0	36	1.48
26700730--26700763	18	1.9	17	88	5	50	70	11	5	11	1.32
26707266--26707300	12	2.9	12	86	0	52	14	14	45	25	1.82
26725504--26725891	130	3.0	130	93	4	689	33	11	26	29	1.91
26729509--26729569	28	2.2	28	96	0	113	9	32	3	54	1.50
26738664--26738723	26	2.3	27	88	2	86	28	13	31	26	1.94
26744759--26745127	104	3.6	103	92	2	591	19	20	29	30	1.97
26748373--26748464	43	2.1	43	81	0	112	18	26	27	28	1.98
26751664--26751722	29	2.0	30	93	3	102	50	11	6	30	1.65
26757184--26757248	30	2.2	30	94	0	112	24	3	12	60	1.47
26760081--26760140	30	2.0	31	86	3	86	43	0	36	20	1.52
26760363--26760425	23	2.7	24	73	4	67	33	19	17	30	1.95
26761932--26762033	52	1.9	53	88	2	152	27	28	11	32	1.92
26763232--26763296	17	4.0	16	72	11	53	61	0	1	36	1.05
26763650--26763685	19	1.9	18	88	5	54	38	0	5	55	1.23
26763902--26763994	20	4.8	19	71	18	68	60	4	1	34	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26763901--26764018	37	3.1	37	74	19	91	59	4	0	35	1.23
26763998--26764056	20	3.0	20	80	9	59	57	5	0	37	1.21
26777651--26777703	27	2.0	27	96	0	97	32	11	16	39	1.85
26779714--26779770	29	1.9	30	89	3	89	10	36	26	26	1.89
26791551--26791588	6	6.3	6	100	0	76	50	34	0	15	1.45
26796347--26796398	26	2.0	26	88	0	77	30	13	28	26	1.94
26802746--26802825	37	2.1	38	81	2	90	66	6	5	22	1.34
26803733--26803761	14	2.1	14	100	0	58	27	6	37	27	1.82
26813787--26813817	14	2.1	15	94	5	55	58	0	0	41	0.98
26813800--26813913	30	3.8	30	74	15	110	54	0	0	43	1.12
26813865--26813914	20	2.5	20	74	3	57	54	0	0	46	1.00
26813912--26813956	20	2.2	21	88	4	65	42	4	2	51	1.34
26813906--26813955	21	2.4	22	83	10	68	42	4	2	52	1.31
26814857--26814907	21	2.5	20	76	14	52	54	1	1	41	1.22
26815652--26815691	19	2.2	19	86	4	55	50	5	0	45	1.23
26830404--26830553	41	3.7	41	89	0	219	24	27	18	30	1.98
26833432--26833463	15	2.1	15	94	0	55	15	6	6	71	1.26
26835072--26835203	37	3.5	35	71	21	90	41	2	6	50	1.40
26841094--26841124	8	3.8	8	95	4	53	22	12	0	64	1.27
26843983--26844215	24	9.4	25	69	14	87	20	24	21	33	1.97
26845584--26845868	50	5.5	50	81	9	234	21	28	23	26	1.99
26846216--26846273	30	1.9	30	85	0	80	37	22	3	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26847163--26847190	14	2.0	14	100	0	56	42	0	7	50	1.30
26848243--26848281	15	2.6	16	84	12	55	56	2	10	30	1.46
26849901--26849941	16	2.5	17	76	15	50	19	0	7	73	1.07
26849977--26850004	2	14.0	2	100	0	56	50	0	0	50	1.00
26851727--26851801	3	25.0	3	100	0	150	33	0	0	66	0.92
26852859--26852922	28	2.3	28	78	10	78	25	14	12	48	1.78
26857783--26857978	25	7.9	24	69	14	96	34	22	24	17	1.96
26857786--26857926	73	1.9	73	82	2	176	34	23	24	17	1.96
26857890--26857980	26	3.5	27	79	7	100	34	21	24	19	1.97
26862472--26862521	20	2.5	20	96	0	91	36	0	12	52	1.39
26863704--26863895	56	3.3	55	69	16	161	51	4	2	41	1.37
26863692--26863953	120	2.2	120	95	0	461	51	4	2	41	1.35
26863719--26863919	61	3.3	59	68	12	165	50	5	2	41	1.39
26863722--26863905	57	3.1	58	69	18	162	50	5	2	41	1.40
26866131--26866235	51	2.1	50	92	1	174	42	20	10	26	1.84
26866491--26866944	227	2.0	227	97	0	863	33	19	24	23	1.97
26867561--26867595	2	17.5	2	100	0	70	51	0	0	48	1.00
26868436--26868500	32	2.0	33	93	3	114	47	6	18	27	1.72
26869446--26869471	3	8.7	3	100	0	52	0	34	0	65	0.93
26874503--26874553	26	2.0	26	84	7	68	43	3	29	23	1.72
26875680--26875709	13	2.2	14	94	5	53	50	0	10	40	1.36
26875762--26875808	19	2.6	18	83	6	60	70	0	4	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26876073--26876101	3	9.7	3	100	0	58	68	0	0	31	0.89
26890678--26890748	34	2.1	34	89	5	108	22	0	26	50	1.49
26891284--26891388	40	2.6	41	74	5	108	34	20	25	19	1.96
26891445--26891683	41	5.8	41	80	5	261	17	25	23	33	1.96
26891445--26891644	82	2.4	81	90	3	310	17	26	23	34	1.96
26891445--26891683	82	2.9	81	82	8	295	17	25	23	33	1.96
26892472--26892540	21	3.3	21	89	4	104	34	18	43	2	1.65
26892973--26893242	43	6.3	43	82	5	248	25	22	20	31	1.98
26892974--26893242	85	3.2	84	78	6	267	26	22	20	30	1.98
26892973--26893242	42	6.3	43	82	5	257	25	22	20	31	1.98
26901866--26901913	17	2.7	18	74	6	62	41	4	27	27	1.74
26905891--26905949	18	3.1	18	75	13	64	10	13	38	37	1.79
26905891--26905960	21	3.5	20	77	12	74	10	11	41	37	1.75
26906630--26906684	28	2.0	28	88	0	83	45	18	7	29	1.76
26906679--26906762	22	3.4	25	73	20	86	55	9	4	29	1.52
26906655--26906769	26	4.6	26	73	13	98	52	13	6	28	1.64
26906778--26906860	26	3.2	25	84	6	85	49	14	7	28	1.70
26906886--26906954	25	2.7	26	76	13	70	50	13	7	28	1.67
26906701--26906990	96	3.1	95	91	2	469	48	18	6	27	1.72
26906893--26906960	26	2.6	26	83	4	75	51	14	7	26	1.68
26908081--26908119	6	6.5	6	90	0	60	61	15	5	17	1.51
26908081--26908125	12	3.8	12	90	0	72	60	13	6	20	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26908081--26908125	18	2.5	18	85	0	63	60	13	6	20	1.55
26910146--26910192	2	23.5	2	100	0	94	48	0	0	51	1.00
26911021--26911098	24	3.2	24	85	10	113	25	17	0	56	1.41
26911415--26911504	45	2.0	45	97	0	171	30	22	12	35	1.90
26911920--26912059	28	5.1	27	84	4	147	18	12	7	60	1.56
26911920--26912080	27	5.9	27	83	7	112	19	14	8	57	1.61
26912636--26912838	45	4.5	45	81	7	234	22	20	21	36	1.95
26912624--26912838	89	2.4	90	89	0	324	21	20	21	37	1.95
26912627--26912838	90	2.4	89	89	0	316	21	20	21	36	1.95
26919189--26919228	17	2.4	17	95	0	71	22	20	35	22	1.96
26923258--26923310	21	2.5	21	93	0	88	60	13	5	20	1.53
26925829--26925927	46	2.2	43	81	12	110	32	23	19	25	1.97
26925933--26926122	51	3.8	52	77	11	216	30	28	17	23	1.97
26925931--26926114	100	1.8	102	90	4	302	30	27	17	23	1.97
26929097--26929227	41	3.2	41	83	6	169	50	6	22	19	1.71
26932018--26932056	19	2.1	19	95	0	69	30	15	28	25	1.96
26933757--26933885	41	3.2	41	83	4	163	51	3	23	20	1.63
26934879--26935001	54	2.3	55	80	10	130	23	24	26	26	2.00
26936114--26936147	7	4.9	7	88	0	50	32	35	0	32	1.58
26949058--26949151	46	2.0	46	97	0	179	29	15	11	42	1.83
26949488--26949533	23	2.0	23	95	0	83	45	4	23	26	1.71
26949767--26949792	13	2.0	13	100	0	52	69	30	0	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26952951--26953005	6	9.2	6	100	0	110	16	18	0	65	1.27
26966382--26966406	13	1.9	13	100	0	50	36	8	16	40	1.77
26966395--26966444	26	1.9	26	87	0	73	30	8	26	36	1.85
26966479--26966530	16	3.2	16	91	0	77	30	0	34	34	1.58
26966514--26966601	45	2.0	44	86	2	122	32	6	28	31	1.83
26966896--26966941	16	2.9	16	78	12	51	52	2	0	45	1.13
26966896--26966950	15	3.7	15	79	13	53	52	1	0	45	1.11
26967016--26967057	15	2.9	15	82	10	52	52	0	0	47	1.00
26966937--26967106	37	4.7	35	68	20	100	47	6	2	43	1.41
26966850--26967113	107	2.5	107	96	1	485	47	6	2	43	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206