genome.fa.s2.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  108  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31940248--31940292	22	2.0	22	83	12	56	51	2	8	37	1.46
31941108--31941132	13	1.9	13	100	0	50	32	8	40	20	1.81
31942385--31942433	6	8.3	6	82	13	66	83	14	2	0	0.73
31942385--31942433	17	2.8	17	87	3	71	83	14	2	0	0.73
31944929--31945065	65	2.1	65	93	0	229	28	37	6	27	1.81
31945637--31945676	21	1.9	21	94	0	71	55	0	5	40	1.22
31958364--31958406	21	2.0	21	91	8	70	60	6	0	32	1.23
31960718--31960914	90	2.2	89	82	4	236	30	21	17	30	1.96
31962369--31962416	21	2.3	21	88	0	69	16	10	10	62	1.53
31962378--31962418	21	2.0	21	100	0	82	14	9	9	65	1.46
31963365--31963412	25	1.9	25	91	0	78	14	16	27	41	1.87
31968083--31968126	15	3.2	15	69	24	51	43	36	2	18	1.63
31969958--31970005	25	1.9	25	100	0	96	16	16	14	52	1.76
31981409--31982209	44	18.6	43	71	12	354	33	21	19	24	1.97
31981412--31982267	85	9.9	85	70	12	453	33	21	20	24	1.97
31981367--31981990	129	4.9	127	74	8	433	33	21	19	25	1.97
31981457--31982203	214	3.5	216	88	3	997	33	21	19	24	1.97
31981933--31982252	173	1.8	173	85	1	453	33	21	20	24	1.97
31986594--31986691	48	2.0	48	94	0	169	40	14	17	27	1.88
31999205--31999246	15	2.8	15	81	0	57	59	2	14	23	1.47
32021049--32021127	31	2.6	31	80	4	90	45	5	7	41	1.54
32021347--32021466	64	1.9	64	92	0	204	28	14	10	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32022165--32022194	2	15.0	2	100	0	60	50	0	0	50	1.00
32022946--32023012	30	2.2	31	84	12	95	50	2	13	32	1.56
32026437--32026485	25	2.0	25	100	0	98	36	18	20	24	1.94
32030154--32030257	53	2.0	53	84	0	136	19	25	26	27	1.99
32036894--32036981	26	3.3	26	72	10	72	40	11	27	20	1.86
32037031--32037137	27	4.0	26	75	7	90	46	14	18	20	1.83
32037433--32037498	33	2.0	33	93	0	114	43	10	22	22	1.84
32037434--32037489	19	3.2	19	64	23	50	48	10	19	21	1.79
32050318--32050360	17	2.5	17	80	0	50	23	4	4	67	1.28
32050822--32050871	9	5.6	9	83	9	66	44	20	10	26	1.82
32050880--32050929	12	3.8	13	81	7	57	22	2	10	66	1.32
32051526--32051565	16	2.5	16	84	11	55	40	7	25	27	1.82
32051744--32051798	23	2.4	23	81	6	67	52	1	0	45	1.11
32053023--32053049	13	2.1	13	100	0	54	22	18	29	29	1.97
32056938--32056992	27	2.0	27	85	0	74	36	16	20	27	1.93
32083798--32083929	49	2.7	50	76	4	124	29	22	26	21	1.99
32085424--32085481	29	2.0	29	93	0	98	41	15	25	17	1.89
32089273--32089353	42	1.9	42	87	5	119	19	29	29	20	1.97
32090416--32090515	29	3.4	29	82	8	132	30	27	9	34	1.87
32105214--32105262	20	2.5	20	81	15	66	12	24	6	57	1.58
32108910--32109050	63	2.2	63	83	0	165	26	27	22	22	1.99
32120770--32120897	29	4.3	29	75	10	116	22	25	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32122331--32122361	15	2.1	15	93	0	53	32	9	0	58	1.31
32122636--32122696	23	2.7	23	75	12	63	34	13	0	52	1.40
32123121--32123531	107	3.9	107	90	1	621	31	18	18	31	1.95
32134196--32134288	45	2.1	45	81	4	107	25	13	8	51	1.70
32134262--32134456	108	1.8	108	85	0	273	26	16	11	45	1.82
32134951--32135208	44	5.9	44	76	5	238	26	15	26	31	1.95
32137511--32137572	23	2.7	23	75	7	63	33	12	0	53	1.39
32138109--32138426	107	3.0	105	88	4	444	31	18	17	32	1.95
32146679--32146954	41	6.7	41	85	1	365	21	21	27	30	1.98
32147324--32147371	21	2.2	22	88	3	71	18	0	39	41	1.51
32147550--32147597	15	3.3	15	82	5	62	18	0	35	45	1.50
32150070--32150299	43	5.3	43	89	3	347	26	30	18	25	1.98
32152419--32152447	14	2.0	15	93	6	51	34	48	0	17	1.47
32153313--32153551	41	5.9	41	84	2	304	27	31	21	19	1.97
32153313--32153551	80	2.9	82	88	2	356	27	31	21	19	1.97
32153299--32153546	121	2.0	121	85	1	336	28	29	20	20	1.98
32153621--32153715	40	2.4	40	80	1	120	23	13	21	42	1.88
32154176--32154421	86	2.8	87	81	7	259	33	9	15	41	1.79
32154392--32154516	40	3.1	40	81	4	119	29	6	14	49	1.68
32155451--32155475	9	2.8	9	100	0	50	24	0	0	76	0.80
32155472--32155512	11	3.7	11	96	0	73	43	0	0	56	0.99
32156981--32157039	28	2.1	28	93	0	100	20	25	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32157009--32157253	43	5.7	43	81	2	224	25	19	26	28	1.99
32160244--32160469	29	7.7	29	72	7	179	23	28	14	34	1.93
32160244--32160457	87	2.4	87	92	1	338	23	28	12	34	1.92
32160297--32160469	59	2.9	58	76	11	181	22	28	13	35	1.93
32164776--32164824	20	2.5	20	96	0	89	53	0	24	22	1.47
32165710--32165807	42	2.3	42	85	0	142	22	21	32	23	1.98
32167165--32167204	20	2.0	20	85	5	53	42	7	12	37	1.71
32168656--32168770	29	3.9	29	79	5	106	38	14	25	21	1.92
32169938--32169967	16	1.9	16	93	6	53	30	0	20	50	1.49
32172350--32172697	31	11.3	31	78	5	321	31	6	19	43	1.76
32172312--32172673	92	3.9	92	85	1	449	31	6	19	42	1.77
32172350--32172697	61	5.7	60	76	8	306	31	6	19	43	1.76
32172355--32172697	123	2.8	122	78	8	372	31	6	19	43	1.76
32179094--32179148	25	2.2	25	83	6	76	30	5	14	49	1.66
32179149--32179772	31	20.4	31	71	10	399	32	7	16	43	1.76
32179149--32179772	92	6.8	92	85	2	747	32	7	16	43	1.76
32179139--32179708	276	2.1	276	87	1	829	32	6	16	43	1.74
32179053--32179772	184	3.9	182	82	5	751	32	6	16	44	1.74
32179150--32179815	61	10.9	60	72	10	341	32	7	16	43	1.76
32179531--32179809	31	9.1	31	72	7	122	33	8	16	41	1.79
32180938--32180987	26	1.9	26	91	0	82	26	10	24	40	1.86
32182719--32182772	22	2.5	22	84	6	74	37	20	12	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32187968--32188001	14	2.4	14	95	0	59	50	0	23	26	1.50
32190274--32190383	33	3.3	33	83	1	139	14	8	33	43	1.75
32199011--32199055	24	2.0	24	86	8	67	35	4	0	60	1.17
32213358--32213460	3	34.3	3	98	0	197	33	0	33	33	1.65
32214599--32214638	17	2.2	18	86	8	55	57	5	17	20	1.58
32215066--32215104	21	1.9	20	89	5	60	41	0	0	58	0.98
32215064--32215111	21	2.3	21	75	7	53	45	0	0	54	0.99
32215107--32215152	17	2.8	17	75	15	51	34	0	0	65	0.93
32215075--32215159	29	2.8	31	77	21	92	37	0	1	61	1.04
32220928--32221943	506	2.0	506	99	0	2014	27	19	17	34	1.95
32235175--32235204	13	2.3	13	94	0	51	3	20	43	33	1.68
32236788--32236848	28	2.2	28	87	0	86	60	0	1	37	1.07
32237378--32237403	2	13.0	2	100	0	52	50	0	0	50	1.00
32238558--32238606	24	2.0	24	96	0	89	24	12	10	53	1.69
32238562--32238614	24	2.2	24	89	0	79	28	15	7	49	1.71
32241170--32241198	15	1.9	15	100	0	58	31	13	27	27	1.94
32242119--32242225	49	2.2	49	84	5	144	34	32	15	16	1.91
32244316--32244363	16	2.9	17	78	15	55	41	2	2	54	1.24
32244323--32244367	22	2.0	22	87	8	65	40	2	0	57	1.11
32249422--32249573	31	5.0	30	77	9	119	21	22	12	43	1.86
32249464--32249584	31	3.9	31	84	1	125	20	23	15	40	1.91
32253120--32253156	2	18.5	2	100	0	74	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32257692--32257948	129	2.0	128	84	4	338	27	28	14	29	1.95
32259279--32259320	20	2.2	19	86	4	57	2	33	7	57	1.39
32265115--32265596	264	1.8	264	82	2	619	39	10	12	37	1.77
32268793--32268827	17	2.1	17	88	0	52	8	5	8	77	1.13
32269579--32269630	21	2.4	21	80	6	59	36	5	1	55	1.35
32269531--32269629	23	4.2	24	73	10	80	35	8	3	53	1.46
32275768--32275885	57	2.1	58	85	1	157	27	17	6	47	1.73
32279175--32279265	42	2.2	42	85	0	119	21	20	17	39	1.92
32279184--32279303	42	2.9	42	81	2	116	23	20	20	35	1.96
32288406--32288443	19	2.0	19	94	0	67	39	10	13	36	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206