genome.fa.s2.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  58  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16467955--16468080	51	2.6	49	82	9	143	38	3	2	56	1.28
16485465--16485658	95	2.0	97	90	2	311	37	15	15	31	1.89
16486765--16486799	14	2.5	14	85	0	52	22	57	2	17	1.53
16488516--16488563	24	2.0	24	95	0	87	33	6	8	52	1.57
16493856--16493881	3	8.7	3	100	0	52	30	0	0	69	0.89
16496472--16496524	13	3.8	14	74	18	56	60	1	1	35	1.19
16496632--16496670	21	2.0	20	85	10	53	48	2	2	46	1.29
16496645--16496678	17	2.0	17	94	0	59	50	5	5	38	1.51
16506284--16506344	25	2.4	27	76	17	67	52	4	11	31	1.58
16507462--16507514	21	2.5	21	84	0	70	30	7	32	30	1.85
16507617--16507656	18	2.2	18	90	0	62	47	0	0	52	1.00
16514316--16514340	2	12.5	2	100	0	50	48	0	0	52	1.00
16516337--16516362	12	2.2	12	100	0	52	34	7	15	42	1.75
16522012--16522182	43	4.0	43	68	15	120	23	18	28	29	1.98
16524316--16524431	54	2.1	54	91	1	187	42	15	19	22	1.89
16529999--16530056	22	2.6	22	81	7	64	41	17	5	36	1.72
16534956--16535515	3	186.7	3	100	0	1120	66	0	0	33	0.92
16535662--16535739	27	2.8	28	74	14	81	55	0	7	37	1.29
16535800--16535875	36	2.1	36	80	11	84	51	1	9	38	1.42
16536389--16536446	22	2.6	22	81	7	64	41	17	5	36	1.72
16537274--16538239	100	9.3	100	70	11	582	25	24	20	29	1.99
16537326--16537608	50	5.7	50	73	3	282	24	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16537241--16537609	50	7.4	49	70	6	247	24	23	21	29	1.99
16537566--16537950	168	2.3	168	89	1	567	26	24	18	30	1.98
16537897--16538242	50	6.9	50	71	1	262	26	23	21	28	1.99
16543232--16543274	17	2.8	15	83	13	52	23	2	0	74	0.93
16546221--16546255	18	1.9	18	88	11	54	14	2	5	77	1.07
16546430--16546541	45	2.5	44	82	4	136	27	25	14	33	1.94
16546658--16546990	44	7.6	44	67	10	135	24	26	22	27	2.00
16546645--16546994	132	2.7	132	94	0	619	23	25	23	27	2.00
16547036--16547211	50	3.5	50	74	0	181	26	19	19	34	1.96
16546997--16547225	100	2.3	100	89	0	341	27	18	18	34	1.95
16547448--16547555	50	2.2	50	84	0	144	28	18	18	34	1.95
16547197--16547821	310	2.0	313	87	3	891	27	23	18	31	1.97
16547990--16548075	44	2.0	44	83	0	109	25	23	16	34	1.95
16550133--16550157	10	2.5	10	100	0	50	16	28	0	56	1.41
16550907--16550934	8	3.5	8	100	0	56	39	0	14	46	1.44
16552235--16552275	20	2.1	20	86	13	59	48	9	17	24	1.76
16554123--16554173	3	17.0	3	100	0	102	66	0	0	33	0.92
16554490--16554565	36	2.1	36	80	11	84	51	1	7	39	1.39
16555094--16555138	23	2.0	22	91	4	72	40	17	4	37	1.70
16555094--16555170	19	3.8	19	89	6	91	38	16	7	36	1.78
16558764--16558832	25	2.7	26	80	11	79	23	26	24	26	2.00
16565571--16565611	20	1.9	23	85	14	61	24	12	12	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16568840--16568922	43	1.9	43	92	0	139	49	0	26	24	1.51
16569365--16569399	14	2.5	14	100	0	70	20	0	25	54	1.45
16575276--16575317	20	2.1	20	100	0	84	76	9	9	4	1.15
16578290--16578332	16	2.7	16	85	0	59	51	2	0	46	1.13
16605376--16605413	20	1.9	20	94	0	67	44	2	0	52	1.14
16609339--16609369	14	2.1	15	94	5	55	38	0	0	61	0.96
16609437--16609488	23	2.3	24	80	12	65	28	1	9	59	1.40
16612061--16612108	23	2.1	23	84	0	60	6	4	25	64	1.35
16616032--16616092	22	2.8	21	79	16	61	27	8	4	59	1.47
16616322--16616518	98	2.0	98	94	0	349	29	10	22	37	1.88
16621913--16622160	44	5.8	41	77	9	169	27	20	24	27	1.99
16621953--16622159	84	2.4	87	81	11	214	26	21	24	27	1.99
16621954--16622159	44	4.8	44	78	9	185	26	21	24	27	1.99
16622972--16623028	30	1.9	29	85	3	78	40	3	24	31	1.72
16623240--16623271	13	2.5	13	94	0	55	31	0	12	56	1.37
16623366--16623614	50	4.8	50	89	3	336	25	22	30	21	1.99
16624999--16625107	44	2.4	44	83	10	132	28	18	23	29	1.98
16626850--16626910	22	2.8	21	79	16	61	27	8	4	59	1.47
16627143--16627339	98	2.0	98	94	0	349	29	10	22	37	1.88
16637505--16637553	16	3.1	16	100	0	98	36	6	36	20	1.78
16637785--16637819	18	2.0	17	88	5	52	54	0	0	45	0.99
16637699--16637928	75	3.1	75	69	19	230	46	3	3	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16637930--16637981	18	2.9	18	88	8	79	57	1	1	38	1.21
16637930--16638063	17	8.0	17	70	17	93	55	2	1	40	1.21
16643765--16644058	84	3.4	85	83	5	360	37	23	9	29	1.87
16643752--16644064	169	1.8	172	85	5	445	35	23	9	30	1.88
16644160--16644189	15	2.1	14	93	6	51	90	0	0	10	0.47
16644184--16644315	9	13.7	9	67	15	59	61	1	2	34	1.18
16644193--16644242	20	2.5	21	80	9	59	54	2	0	44	1.11
16644215--16644382	59	2.9	56	79	11	160	62	1	4	31	1.24
16644360--16644415	19	2.8	19	81	10	60	66	1	8	23	1.30
16644363--16644416	20	2.8	19	78	13	56	64	1	7	25	1.30
16644433--16644478	20	2.3	19	78	10	56	26	8	2	63	1.35
16648947--16649061	43	2.7	42	84	8	126	28	26	17	26	1.98
16651854--16651882	7	4.1	7	100	0	58	41	0	27	31	1.56
16652455--16652659	26	7.9	26	81	1	187	19	13	27	39	1.90
16662275--16662312	19	2.0	20	90	10	62	57	2	0	39	1.12
16662332--16662367	18	1.9	19	88	5	56	69	0	0	30	0.89
16662417--16662466	6	8.0	6	83	16	57	66	0	0	34	0.92
16662936--16662990	29	1.9	28	82	10	67	36	7	10	45	1.67
16669210--16669244	6	5.8	6	100	0	70	82	0	17	0	0.66
16670832--16670898	32	2.1	31	86	8	91	38	4	0	56	1.19
16682712--16683659	44	21.5	44	76	7	825	27	15	26	30	1.96
16682712--16683648	132	7.1	132	92	0	1534	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682712--16683651	265	3.6	265	93	0	1578	27	15	26	30	1.96
16682712--16683648	397	2.4	396	92	0	1552	27	15	27	29	1.96
16683755--16683889	43	3.1	43	69	4	126	25	31	25	17	1.97
16683642--16683957	88	3.6	87	93	0	508	26	29	24	19	1.98
16683781--16683924	44	3.3	42	67	12	110	25	29	24	21	1.99
16683958--16684088	68	1.9	68	84	3	174	23	20	25	29	1.99
16684021--16684146	44	2.9	43	79	9	128	25	16	29	28	1.97
16684812--16684865	19	2.7	21	91	5	85	35	9	14	40	1.78
16685356--16685390	17	2.1	17	89	10	54	34	11	0	54	1.37
16685539--16685620	30	2.6	32	75	16	82	35	3	3	57	1.34
16686106--16686130	2	12.5	2	100	0	50	52	0	0	48	1.00
16688066--16688109	17	2.6	17	85	3	63	47	0	11	40	1.39
16688092--16688174	10	8.2	10	76	12	53	48	2	6	43	1.40
16688131--16688179	2	25.0	2	91	4	82	48	2	0	48	1.12
16688260--16688307	3	16.0	3	86	0	69	64	2	4	29	1.23
16688624--16688716	21	4.4	21	89	8	120	39	15	8	36	1.78
16689478--16689523	20	2.3	20	92	0	74	15	28	19	36	1.92
16692426--16692532	41	2.6	41	88	2	153	22	18	26	32	1.97
16692458--16692593	41	3.3	41	84	0	164	23	19	25	32	1.97
16692663--16692687	2	12.5	2	100	0	50	48	0	0	52	1.00
16695992--16696048	5	11.0	5	78	14	53	40	7	17	35	1.77
16695971--16696055	27	3.1	27	69	12	66	40	7	16	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16698629--16698669	21	2.0	21	85	0	55	39	17	2	41	1.62
16701928--16701983	28	2.0	28	100	0	112	42	25	10	21	1.85
16702157--16702191	18	2.0	18	88	5	54	31	25	17	25	1.97
16702195--16702499	35	8.7	35	81	4	217	23	16	28	31	1.96
16702233--16702535	70	4.3	70	78	2	225	23	14	29	32	1.95
16702560--16702664	33	3.2	33	82	5	131	39	23	15	21	1.92
16702671--16702730	22	2.7	22	76	0	57	33	13	20	33	1.91
16704545--16704607	30	2.2	29	86	11	85	15	28	3	52	1.58
16707633--16707679	2	23.5	2	100	0	94	51	0	0	48	1.00
16707953--16708048	41	2.4	41	91	5	151	30	18	18	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206