genome.fa.s2.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  151  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45843539--45843663	30	4.2	29	81	6	126	41	2	20	35	1.66
45843539--45843663	59	2.1	59	88	4	180	41	2	20	35	1.66
45843846--45844877	76	13.4	75	87	4	1216	34	20	17	28	1.95
45843842--45844877	154	6.7	152	85	6	1165	34	20	17	28	1.95
45844978--45845476	242	2.1	234	92	4	829	35	20	17	27	1.95
45844978--45845476	78	6.3	78	92	4	820	35	20	17	27	1.95
45846337--45846392	10	5.6	10	81	8	60	3	7	5	83	0.88
45852038--45852127	36	2.5	35	83	5	101	42	7	12	37	1.71
45852071--45852214	17	7.9	18	73	16	109	43	10	11	34	1.75
45852068--45852169	52	2.0	52	94	0	177	46	10	8	34	1.70
45852123--45852227	19	5.4	21	72	17	84	40	9	11	38	1.74
45852105--45852229	40	3.3	40	83	10	156	42	9	11	36	1.73
45852071--45852222	18	8.2	18	76	17	125	42	9	11	36	1.75
45852356--45852392	18	2.1	18	89	0	56	43	10	8	37	1.69
45853032--45853128	4	24.5	4	70	19	62	0	26	0	73	0.84
45853037--45853116	26	3.2	25	76	16	87	0	27	0	72	0.85
45853036--45853130	7	13.7	7	69	20	58	0	27	0	72	0.85
45853577--45853745	30	5.7	29	84	9	139	39	2	23	34	1.68
45853607--45853745	59	2.3	60	93	1	244	38	0	25	35	1.61
45856830--45857097	14	18.8	14	69	13	100	23	1	30	45	1.62
45856913--45857097	7	26.0	7	68	11	54	22	1	32	44	1.60
45856864--45857011	72	2.1	72	92	0	242	24	2	27	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45856965--45857011	22	2.2	21	84	3	58	21	0	29	48	1.50
45857024--45857097	15	5.1	15	73	3	53	20	0	36	43	1.52
45857609--45858043	115	3.8	114	78	4	401	26	15	21	36	1.93
45858497--45858535	20	2.0	20	84	0	51	10	12	28	48	1.74
45860204--45860451	9	26.7	9	72	12	171	43	18	0	38	1.53
45860189--45860451	56	4.7	56	91	0	418	43	18	0	38	1.53
45866280--45866422	43	3.3	43	72	5	146	28	21	21	27	1.99
45873045--45873119	39	1.9	39	97	0	141	28	18	13	40	1.88
45874034--45874109	21	3.7	21	91	3	120	36	10	13	39	1.79
45874446--45874487	3	14.0	3	89	0	66	30	2	2	64	1.19
45874570--45874662	23	4.2	23	68	21	72	36	7	1	54	1.36
45874598--45874651	27	2.1	27	86	6	76	40	11	1	46	1.50
45874614--45874657	17	2.6	17	85	3	63	40	11	0	47	1.39
45874736--45874785	24	2.1	24	85	7	66	28	8	0	64	1.22
45874826--45874883	31	1.9	31	89	3	91	34	3	3	58	1.32
45874823--45874903	28	2.9	27	79	5	72	34	3	4	56	1.38
45880228--45880325	49	2.0	49	91	0	160	25	35	21	17	1.95
45880140--45880413	137	2.0	137	87	1	397	27	28	23	20	1.99
45880559--45880697	44	3.2	43	67	8	109	28	26	25	19	1.99
45880277--45880734	88	5.2	88	88	1	648	27	26	24	21	1.99
45880429--45880779	88	4.0	88	86	0	254	30	27	22	19	1.98
45881204--45881359	44	3.7	42	78	12	124	29	19	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45881753--45881852	40	2.4	42	86	11	143	36	7	15	42	1.74
45881754--45881852	21	4.7	21	82	8	114	36	7	14	42	1.72
45882168--45882212	3	15.0	3	90	0	54	31	6	2	60	1.35
45882126--45882185	20	2.9	20	76	14	59	26	1	6	65	1.27
45882303--45882346	17	2.6	17	85	3	63	40	11	0	47	1.39
45882421--45882470	24	2.1	24	85	7	66	28	8	0	64	1.22
45882467--45882512	24	1.9	24	83	16	60	41	0	2	56	1.11
45882482--45882550	29	2.3	30	80	14	81	36	4	4	55	1.40
45883028--45883072	2	22.5	2	100	0	90	51	0	0	48	1.00
45884539--45885460	70	13.2	70	77	4	680	24	17	26	30	1.97
45884539--45885460	140	6.6	140	78	1	756	24	17	26	30	1.97
45885622--45885651	14	2.1	14	93	0	51	20	23	30	26	1.98
45891167--45891226	29	2.1	29	96	0	111	45	10	16	28	1.80
45895251--45895291	13	3.2	13	86	10	50	46	4	7	41	1.53
45898310--45898366	26	2.2	26	84	9	73	21	26	19	33	1.97
45898422--45898480	26	2.3	26	85	8	77	25	15	15	44	1.85
45900961--45901348	205	1.9	205	98	0	749	34	24	10	30	1.89
45902008--45902054	23	2.0	24	83	8	60	48	19	2	29	1.60
45903551--45903667	44	2.7	44	84	9	159	29	29	17	22	1.97
45904405--45904438	18	1.9	17	88	5	50	67	14	2	14	1.34
45911811--45911844	15	2.3	15	94	0	59	17	0	17	64	1.29
45923840--45924012	88	2.0	88	86	2	240	27	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45923840--45923969	43	3.0	43	68	6	109	27	20	26	26	1.99
45924329--45924489	44	3.8	44	77	10	174	29	20	21	27	1.98
45926885--45926918	15	2.3	15	94	0	59	17	0	17	64	1.29
45936008--45936040	14	2.3	15	89	5	50	27	12	33	27	1.92
45936120--45936209	1	90.0	1	71	0	54	84	1	11	3	0.79
45936120--45936206	5	17.8	5	76	17	69	83	1	11	3	0.81
45936120--45936207	6	14.7	6	75	17	67	84	1	11	3	0.81
45936125--45936207	37	2.2	37	85	10	107	84	1	10	3	0.80
45936120--45936209	43	2.1	42	87	2	126	84	1	11	3	0.79
45937101--45937222	46	2.7	44	80	7	122	27	14	23	33	1.94
45937374--45937735	145	2.5	145	81	2	431	33	18	19	29	1.95
45937666--45937795	44	2.9	45	73	8	113	30	19	20	30	1.97
45940488--45940550	32	2.0	32	90	0	99	36	9	12	41	1.76
45941679--45941710	13	2.4	14	94	5	57	37	0	21	40	1.54
45944180--45944220	21	2.0	21	86	13	59	39	0	7	53	1.29
45946303--45946354	10	5.4	10	72	9	54	63	0	1	34	1.06
45946300--45946354	19	2.9	19	81	2	67	65	0	1	32	1.03
45953120--45953180	32	2.0	32	90	6	99	40	27	0	31	1.57
45963322--45963357	3	12.0	3	100	0	72	33	0	0	66	0.92
45964603--45964674	17	3.9	18	76	18	60	9	2	6	80	0.99
45964610--45964658	20	2.5	19	84	12	64	6	4	6	83	0.90
45964638--45964682	24	1.9	23	90	4	72	13	0	4	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45966171--45966203	13	2.5	13	95	0	57	18	6	30	45	1.73
45967083--45967156	37	2.0	37	100	0	148	35	5	18	40	1.74
45969982--45970017	16	2.3	16	90	4	56	72	13	0	13	1.13
45974499--45974531	16	2.1	16	100	0	66	12	18	21	48	1.80
45974577--45974729	74	2.1	73	86	1	207	26	16	16	39	1.90
45995505--45995589	27	3.1	28	89	5	138	31	24	22	21	1.98
45995949--45996118	82	2.1	81	86	3	234	19	16	22	41	1.90
45995949--45996118	27	6.3	27	81	1	205	19	16	22	41	1.90
45998945--45998975	16	1.9	16	93	0	53	29	3	16	51	1.59
46000123--46000167	23	2.0	22	82	4	54	40	4	17	37	1.70
46000637--46000674	3	12.3	3	88	5	58	34	2	0	63	1.09
46001749--46001775	14	1.9	14	100	0	54	22	14	7	55	1.64
46002683--46002930	44	5.7	44	90	3	378	25	19	26	29	1.99
46002683--46002930	129	1.9	132	90	4	396	25	19	26	29	1.99
46003152--46003332	99	1.8	100	87	1	274	30	20	20	27	1.98
46003347--46003856	44	11.8	44	74	11	349	30	20	21	27	1.98
46003347--46003845	216	2.3	215	79	9	600	30	20	21	27	1.98
46003332--46003847	260	2.0	259	84	6	670	30	20	22	27	1.98
46004414--46004469	21	2.8	19	82	10	76	41	8	14	35	1.77
46004414--46004492	19	3.7	22	75	14	60	40	6	15	37	1.72
46004965--46004989	13	1.9	13	100	0	50	32	0	0	68	0.90
46005035--46005097	33	1.9	32	81	12	74	33	6	3	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46007526--46008011	241	2.0	241	91	1	785	28	21	17	32	1.96
46017163--46017217	20	2.8	20	82	0	65	18	38	18	25	1.93
46017775--46017832	12	4.4	12	72	19	53	39	0	17	43	1.49
46027531--46027596	20	3.3	20	78	0	69	22	22	19	34	1.96
46027840--46027878	13	3.0	13	88	0	60	33	2	17	46	1.62
46034908--46034963	12	4.8	12	78	8	53	53	0	26	19	1.45
46034908--46034968	23	2.6	22	84	7	68	50	0	26	22	1.49
46035732--46035761	14	2.2	13	94	5	51	16	23	30	30	1.96
46038799--46038835	2	18.5	2	100	0	74	51	0	0	48	1.00
46044282--46044374	44	2.1	46	88	8	138	37	26	4	31	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206