genome.fa.s2.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  180  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55028293--55028744	132	3.4	132	90	0	699	28	24	17	28	1.98
55027237--55029037	793	2.3	793	84	2	2150	26	22	16	28	1.94
55028882--55029037	44	3.5	44	91	0	258	29	25	14	30	1.95
55028029--55029465	748	1.9	749	99	0	2831	28	24	17	29	1.97
55028987--55029465	132	3.6	132	82	6	366	28	25	17	28	1.98
55029125--55029460	44	7.6	44	66	11	168	28	25	18	28	1.98
55029585--55029741	44	3.6	44	90	0	242	29	24	14	31	1.94
55030083--55030293	44	4.8	44	69	13	155	27	26	18	27	1.98
55030039--55030325	132	2.2	131	92	1	495	27	26	18	27	1.98
55030463--55030619	44	3.6	44	92	0	260	29	25	14	30	1.95
55030568--55030848	132	2.1	132	79	5	300	29	24	16	29	1.97
55030644--55030948	132	2.3	130	88	1	430	29	22	18	29	1.97
55030702--55030880	44	4.1	45	64	13	104	27	22	18	30	1.97
55031077--55031233	44	3.6	44	91	0	251	29	24	14	31	1.95
55030039--55031555	614	2.5	615	96	0	2745	28	23	17	29	1.97
55031320--55031787	44	10.6	44	66	12	192	28	24	18	28	1.98
55031807--55031909	44	2.3	44	93	0	170	27	20	19	33	1.97
55032001--55032157	44	3.6	44	91	0	251	29	24	14	31	1.95
55032244--55032579	44	7.6	44	68	12	188	28	24	18	28	1.98
55031240--55032611	132	10.4	132	79	5	1245	28	23	18	29	1.98
55030922--55032667	924	1.9	924	95	0	3161	28	23	18	30	1.97
55031846--55033425	748	2.1	748	99	0	3115	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55032749--55032905	44	3.6	44	92	0	260	29	25	14	30	1.95
55032854--55033359	132	3.8	131	83	5	531	28	24	17	29	1.97
55032992--55033327	44	7.6	44	67	12	179	28	24	18	28	1.98
55032908--55033359	132	3.4	132	89	1	674	28	24	17	28	1.98
55032908--55033415	264	1.9	264	82	2	644	29	23	18	28	1.97
55033544--55033744	44	4.6	44	91	0	294	30	24	14	30	1.94
55033751--55034987	132	9.4	131	76	9	955	28	24	18	29	1.98
55033831--55034298	44	10.6	44	66	11	199	28	24	18	28	1.98
55034468--55034623	44	3.6	44	88	0	233	28	26	14	30	1.95
55034745--55034955	44	4.8	44	70	11	162	27	26	18	27	1.98
55035216--55035312	44	2.2	44	94	0	167	27	26	13	31	1.94
55035345--55035589	132	1.9	132	91	1	402	28	23	17	30	1.97
55035727--55035839	44	2.6	44	94	0	190	29	23	15	31	1.95
55035855--55036302	132	3.4	132	89	1	666	29	22	18	29	1.97
55036058--55036261	44	4.6	44	70	9	137	28	24	18	28	1.98
55036431--55036587	44	3.6	44	92	0	260	29	25	14	30	1.95
55036536--55037050	132	3.9	132	83	5	400	29	23	17	29	1.97
55035354--55036833	704	2.1	702	86	3	1958	28	22	17	30	1.97
55036674--55037009	44	7.6	44	67	11	186	28	24	18	28	1.98
55035993--55037657	616	2.7	613	80	5	1640	28	23	17	29	1.97
55036594--55037041	132	3.4	129	86	4	610	29	24	18	28	1.98
55037179--55037335	44	3.6	44	92	0	260	29	25	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55037284--55038565	132	9.7	131	74	12	731	28	23	18	29	1.98
55037422--55037889	44	10.6	44	66	11	199	28	24	18	28	1.98
55037342--55038817	264	5.5	264	73	10	1005	28	23	18	29	1.98
55036612--55038213	880	1.8	877	92	1	2697	28	23	18	30	1.97
55035727--55037789	748	2.8	748	97	0	3811	28	23	17	29	1.97
55038014--55038112	44	2.2	44	96	0	180	30	21	22	26	1.99
55038103--55038257	44	3.6	44	89	3	233	29	25	15	30	1.96
55038109--55038266	86	1.8	86	90	0	253	28	25	14	31	1.95
55038340--55038547	44	4.7	44	67	13	115	27	24	18	29	1.98
55038541--55038589	24	2.0	24	100	0	98	32	16	26	24	1.96
55038404--55038721	156	2.0	156	92	0	521	28	24	19	26	1.99
55038565--55038802	132	1.8	132	91	0	395	29	23	19	27	1.98
55038826--55039771	132	7.2	131	91	1	1482	28	24	17	29	1.98
55038725--55039712	88	11.2	88	69	10	289	28	24	17	29	1.97
55038607--55039037	220	2.0	220	89	2	661	29	23	16	30	1.96
55038565--55039275	352	2.0	350	85	3	946	28	23	18	29	1.97
55037351--55038817	396	3.7	395	71	11	952	28	23	18	29	1.98
55040975--55041007	7	4.7	7	85	14	50	12	12	0	75	1.04
55050615--55050714	12	7.8	13	69	21	52	51	10	11	28	1.69
55050633--55050692	23	2.6	23	84	10	70	51	11	11	25	1.72
55051226--55051256	2	15.5	2	100	0	62	48	0	0	51	1.00
55053217--55053258	22	2.0	22	86	9	61	59	11	9	19	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55054202--55054775	100	5.7	99	85	2	727	24	23	21	29	1.99
55054202--55054777	200	2.9	200	87	1	805	24	23	21	29	1.99
55054335--55054775	50	8.8	50	62	2	150	24	23	22	30	1.99
55056167--55056199	7	4.7	7	88	11	50	12	15	0	72	1.12
55056743--55056813	9	7.6	9	74	13	54	8	0	7	84	0.78
55056753--55056787	14	2.5	13	90	9	52	2	0	11	85	0.69
55056761--55056813	22	2.5	22	81	6	65	9	0	7	83	0.83
55061200--55061242	3	14.3	3	90	0	68	65	0	4	30	1.13
55064528--55064560	2	16.5	2	100	0	66	0	0	48	51	1.00
55065673--55065714	22	2.0	22	86	9	61	59	11	9	19	1.59
55065332--55066023	348	2.0	348	94	1	1217	39	15	19	26	1.91
55070739--55070786	18	2.6	19	77	12	55	62	0	2	35	1.07
55077940--55077968	6	4.8	6	100	0	58	0	13	0	86	0.58
55077820--55078092	150	1.8	150	94	0	483	27	12	18	42	1.86
55083470--55083514	19	2.4	18	81	7	54	60	4	0	35	1.17
55083533--55083572	14	2.9	14	84	0	53	32	7	17	42	1.77
55083556--55083595	20	2.0	20	85	0	53	30	10	10	50	1.69
55084535--55084580	5	9.2	5	95	0	83	36	0	2	60	1.09
55084576--55084616	16	2.4	17	84	16	57	70	0	4	24	1.06
55091141--55091176	16	2.1	17	90	10	56	75	0	5	19	1.00
55095294--55095326	12	2.8	12	95	0	57	51	3	42	3	1.32
55095541--55095582	14	3.0	14	100	0	84	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55098156--55098220	31	2.1	31	85	5	87	43	10	12	33	1.77
55099430--55099510	2	40.5	2	100	0	162	50	0	0	49	1.00
55101815--55101940	43	2.9	42	79	17	150	30	29	17	22	1.96
55107635--55107691	22	2.6	22	91	0	96	36	17	10	35	1.84
55111833--55111865	15	2.2	15	89	10	50	66	0	0	33	0.92
55112438--55112485	20	2.4	21	80	13	57	52	4	0	43	1.20
55115572--55115614	2	21.5	2	100	0	86	48	0	0	51	1.00
55119971--55120006	16	2.2	16	100	0	72	38	36	0	25	1.56
55121710--55121774	20	3.3	19	78	16	60	63	1	1	33	1.13
55123277--55123332	26	2.2	26	86	0	76	28	17	14	39	1.89
55128058--55128101	6	7.2	6	86	2	61	15	18	0	65	1.27
55132833--55132897	21	3.1	21	77	0	76	38	23	20	18	1.93
55134208--55134279	5	14.2	5	77	13	58	56	4	0	38	1.18
55134813--55134857	23	2.0	23	90	0	72	33	8	17	40	1.81
55138431--55138524	24	4.0	24	70	14	70	43	20	12	23	1.86
55138412--55138530	47	2.5	47	83	6	143	43	18	12	25	1.85
55138462--55138530	22	3.0	22	69	19	68	44	18	10	26	1.81
55139460--55139558	28	3.6	27	77	14	103	28	27	12	32	1.92
55144594--55144645	21	2.4	21	77	3	59	53	3	0	42	1.19
55146750--55146823	24	3.2	24	70	14	75	52	4	5	37	1.43
55146748--55146837	44	2.0	44	89	0	135	53	4	5	36	1.45
55151003--55151044	11	3.6	11	81	12	57	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55155278--55155429	62	2.5	62	85	2	189	24	28	21	25	1.99
55156618--55156693	20	4.2	18	73	17	68	65	3	0	30	1.10
55156621--55156662	11	4.0	11	78	12	52	59	4	0	35	1.19
55156598--55156700	26	3.8	26	74	16	86	65	2	1	30	1.18
55156614--55156706	18	5.2	17	74	16	57	64	4	0	31	1.13
55158525--55158554	14	2.1	14	100	0	60	20	13	26	40	1.89
55159141--55159190	20	2.5	19	84	9	64	60	2	2	36	1.20
55159765--55159805	21	2.0	21	90	9	66	34	0	4	60	1.18
55161846--55161878	17	1.9	18	88	11	52	39	0	0	60	0.97
55164486--55164516	9	3.4	9	100	0	62	67	9	0	22	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206