Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  42  of  206  ( 24623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12019667--12019691
2
12.5
2
100
0
50
0
48
0
52
1.00
12023109--12023160
3
17.3
3
81
15
63
67
0
0
32
0.91
12029928--12029965
18
2.1
19
90
5
60
42
5
7
44
1.56
12030518--12030673
30
5.2
30
76
10
149
35
19
2
41
1.66
12030528--12030659
59
2.2
59
82
7
160
34
23
1
40
1.64
12030527--12030695
89
1.9
89
83
0
221
33
21
2
42
1.68
12031029--12031059
14
2.2
14
94
0
53
74
9
16
0
1.07
12031149--12031221
25
3.0
24
82
7
85
71
0
28
0
0.87
12031141--12031194
4
14.0
4
74
14
51
72
0
27
0
0.85
12031141--12031225
32
2.7
33
83
7
104
70
0
29
0
0.87
12031680--12031708
12
2.3
13
94
5
51
27
0
0
72
0.85
12031858--12031960
38
2.7
39
75
6
93
34
13
11
39
1.81
12031858--12031960
20
5.4
19
71
21
74
34
13
11
39
1.81
12031858--12031960
19
5.4
18
72
22
61
34
13
11
39
1.81
12032077--12032118
18
2.3
18
83
0
57
42
9
11
35
1.74
12032152--12032472
18
18.0
17
67
17
138
34
11
10
43
1.75
12032160--12032331
35
4.8
34
80
8
157
33
13
9
43
1.77
12032347--12032403
21
2.7
20
78
10
60
42
12
12
33
1.80
12032383--12032419
16
2.3
16
85
0
56
37
10
10
40
1.75
12032152--12032473
17
18.0
18
68
18
126
34
11
10
43
1.75
12034613--12034679
33
2.1
31
86
10
91
43
1
0
55
1.09
12034649--12034692
21
2.1
21
86
0
61
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12035904--12035948
18
2.5
17
82
10
54
64
4
0
31
1.13
12037229--12037269
16
2.7
15
81
7
55
24
0
2
73
0.96
12046573--12046618
10
4.5
10
75
24
51
67
2
2
28
1.14
12046574--12046632
31
1.9
31
86
6
84
62
3
1
32
1.21
12053553--12053582
11
2.7
11
89
0
51
33
0
0
66
0.92
12053707--12053768
30
2.1
30
93
0
106
58
14
1
25
1.46
12053798--12053840
22
2.0
22
85
0
59
55
9
13
20
1.66
12058433--12058468
2
18.0
2
94
0
63
50
2
0
47
1.15
12070901--12070926
12
2.2
12
100
0
52
26
23
7
42
1.81
12073550--12073612
25
2.5
25
89
0
90
28
23
28
19
1.98
12073806--12073856
21
2.5
20
75
15
50
52
15
0
31
1.43
12077478--12077524
23
2.0
23
91
0
76
44
10
6
38
1.65
12078939--12078997
29
2.0
30
90
3
93
33
3
10
52
1.52
12081405--12081438
17
2.0
17
100
0
68
29
11
23
35
1.90
12087134--12087164
16
2.0
16
93
6
55
74
6
19
0
1.03
12092154--12092205
26
2.0
25
88
3
77
34
3
23
38
1.73
12102034--12102071
20
2.0
20
84
5
51
28
5
10
55
1.56
12102718--12102813
29
3.3
29
81
7
97
61
5
1
32
1.25
12102728--12102813
20
4.4
20
73
19
67
59
4
1
34
1.26
12103240--12103465
10
23.8
9
66
18
93
33
2
3
60
1.26
12103249--12103302
27
2.0
27
85
0
72
31
3
5
59
1.38
12103286--12103340
21
2.7
21
86
8
69
41
1
1
54
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12103341--12103398
29
2.0
28
86
3
80
34
1
5
58
1.30
12103403--12103463
29
2.1
30
84
9
81
24
3
1
70
1.11
12103422--12103465
19
2.3
19
88
0
61
22
4
2
70
1.17
12114257--12114282
2
13.0
2
100
0
52
50
0
0
50
1.00
12117658--12117689
4
7.8
4
96
3
55
78
21
0
0
0.76
12120131--12120159
2
14.5
2
100
0
58
51
0
48
0
1.00
12120301--12120353
2
27.0
2
96
3
99
0
50
0
49
1.00
12121881--12121911
2
15.5
2
100
0
62
48
0
0
51
1.00
12132478--12132597
34
3.6
34
79
5
145
30
13
15
41
1.85
12132704--12132754
24
2.3
23
83
10
61
33
23
13
29
1.93
12134238--12134372
40
3.4
40
75
9
134
31
24
18
25
1.98
12134858--12134887
8
3.9
8
91
8
53
60
0
0
40
0.97
12141543--12141567
13
1.9
13
100
0
50
60
0
0
40
0.97
12141549--12141609
19
2.8
23
77
22
62
50
3
0
45
1.17
12142544--12142576
2
16.5
2
100
0
66
51
0
0
48
1.00
12144226--12144266
21
2.0
21
85
0
55
36
0
2
60
1.10
12149644--12149694
20
2.5
19
78
12
57
39
13
25
21
1.90
12149886--12149944
10
5.8
10
76
11
57
28
1
3
66
1.18
12149889--12149945
9
5.8
9
75
15
51
28
1
3
66
1.18
12149968--12150032
20
3.5
19
74
18
64
32
1
4
61
1.26
12149976--12150032
17
3.1
18
72
20
55
33
1
5
59
1.30
12149965--12150014
17
2.8
17
80
14
57
34
2
2
62
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12152412--12152441
2
15.0
2
100
0
60
50
0
0
50
1.00
12161973--12162035
4
15.8
4
100
0
126
25
0
23
50
1.49
12180786--12180826
20
2.0
21
85
4
57
63
0
0
36
0.95
12180788--12180827
19
2.0
20
85
4
55
65
0
0
35
0.93
12182344--12182518
85
2.1
85
96
0
323
32
22
14
30
1.94
12183521--12183590
24
2.9
24
91
0
122
11
50
4
34
1.58
12187742--12187816
33
2.3
33
92
0
123
28
20
20
32
1.97
12191650--12191675
13
2.0
13
100
0
52
46
0
0
53
1.00
12193263--12193423
41
3.9
41
92
0
259
28
24
19
27
1.98
12196228--12196252
2
12.5
2
100
0
50
52
0
0
48
1.00
12207083--12207116
17
2.0
17
88
0
50
14
8
5
70
1.31
12207574--12207679
30
3.5
30
81
11
110
44
10
13
32
1.77
12209888--12209934
22
2.3
20
82
13
60
65
0
2
31
1.04
12209890--12209937
21
2.2
22
88
3
71
68
0
2
29
1.01
12210509--12210550
19
2.3
18
80
11
50
45
0
0
54
0.99
12214798--12214823
6
4.3
6
100
0
52
50
30
0
19
1.48
12252070--12252112
2
21.5
2
90
0
68
46
2
2
48
1.27
12258490--12258579
36
2.4
36
92
3
144
22
6
34
36
1.80
12259394--12259557
85
1.9
87
86
5
235
39
12
10
37
1.78
12259782--12259841
26
2.3
26
85
8
77
61
0
1
36
1.06
12259820--12259894
20
3.8
19
78
15
71
65
1
1
32
1.09
12259777--12260010
9
24.8
9
65
19
70
62
1
5
31
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12259820--12259893
10
7.4
10
75
11
62
66
1
1
31
1.09
12259861--12259899
19
2.1
19
85
4
53
61
0
5
33
1.18
12259869--12259948
28
2.8
29
75
9
92
63
0
7
28
1.21
12259957--12260005
19
2.7
18
81
12
55
65
2
6
26
1.27
12260194--12260256
30
2.1
30
85
5
83
31
1
3
63
1.19
12264953--12265015
30
2.1
30
96
0
117
58
14
1
25
1.45
12265095--12265125
11
2.8
11
100
0
62
74
0
9
16
1.07
12268454--12269220
155
5.0
154
82
7
999
52
7
10
29
1.62
12268454--12269219
303
2.5
305
94
2
1326
52
7
10
29
1.62
12270858--12270894
12
3.1
12
88
0
56
21
43
32
2
1.67
12271325--12271576
124
2.0
124
96
0
468
40
13
11
34
1.80
12274448--12274534
37
2.3
38
84
11
108
52
10
4
32
1.56
12274523--12274567
23
2.0
23
82
8
56
55
17
2
24
1.53
12282558--12282588
16
1.9
16
93
0
53
54
16
0
29
1.42
12283897--12283936
2
20.5
2
89
5
64
52
0
0
47
1.00
12284967--12285070
41
2.5
42
81
6
133
30
28
16
24
1.96
12286741--12286765
13
1.9
13
100
0
50
40
24
4
32
1.73
12289002--12289110
56
2.0
56
90
1
175
44
11
22
22
1.85
12289943--12289987
18
2.3
19
85
11
56
2
6
11
80
0.99
12290157--12290194
18
2.1
18
85
9
51
13
5
36
44
1.66
12290797--12290912
45
2.6
46
85
6
150
28
17
20
33
1.95
12290739--12291044
44
6.9
44
72
13
135
27
19
20
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12290783--12291052
44
6.0
44
71
13
181
27
18
21
32
1.97
12291068--12291919
100
8.5
100
86
2
1034
25
20
21
32
1.98
12291943--12292294
89
4.0
89
88
1
508
25
25
22
26
2.00
12292084--12292222
44
3.1
44
69
13
113
21
26
25
26
1.99
12292039--12292178
45
3.1
45
70
15
128
25
26
22
26
2.00
12293242--12293275
10
3.2
10
91
8
50
0
11
2
85
0.71
12293744--12293780
8
4.6
8
86
0
56
8
10
5
75
1.17
12295615--12295667
24
2.2
25
86
3
72
45
5
22
26
1.74
12298075--12298184
56
2.0
56
92
0
184
43
11
22
21
1.85
12299010--12299066
23
2.5
22
80
11
62
7
7
8
77
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206