genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  110  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32674721--32675014	44	6.6	44	73	12	152	30	22	17	29	1.97
32674901--32675015	44	2.6	44	88	2	160	33	24	18	24	1.97
32675905--32675947	14	2.9	14	86	10	59	2	18	0	79	0.85
32675899--32675949	20	2.4	21	77	6	50	3	19	0	76	0.94
32681927--32681966	20	2.0	20	90	0	62	32	2	5	60	1.32
32695822--32695883	30	2.1	30	84	6	81	46	11	8	33	1.69
32700127--32700497	105	3.6	103	92	2	591	30	29	19	19	1.97
32700826--32700889	30	2.2	29	81	10	76	29	28	6	35	1.82
32700833--32700889	30	1.9	30	85	3	80	29	24	7	38	1.82
32703310--32703377	33	2.1	33	97	0	127	29	19	17	33	1.95
32707033--32707091	20	2.8	21	76	7	66	15	1	13	69	1.27
32707388--32707505	44	2.7	44	77	5	114	28	21	19	30	1.97
32722474--32722510	18	2.0	19	89	5	58	51	0	43	5	1.24
32724538--32724625	45	2.0	44	84	10	117	39	14	22	22	1.91
32725825--32726317	71	7.1	70	61	23	157	45	5	8	40	1.57
32725729--32726426	138	5.1	137	90	1	1022	44	5	8	41	1.57
32726141--32726192	17	3.0	17	75	11	52	50	1	3	44	1.31
32733019--32733065	23	2.0	23	100	0	94	29	4	21	44	1.71
32733117--32733158	13	3.2	13	93	3	66	45	0	0	54	0.99
32737537--32737650	37	3.1	37	93	0	192	21	26	25	27	1.99
32737537--32737688	74	2.1	74	81	2	171	23	25	25	25	2.00
32745136--32745179	23	1.9	22	82	17	54	36	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32745225--32745317	45	2.1	45	91	0	150	31	22	20	25	1.98
32758243--32758687	49	8.7	50	73	8	285	24	27	20	27	1.99
32770791--32771148	44	8.0	44	79	8	348	29	23	18	29	1.98
32771174--32771532	129	2.8	129	88	0	495	26	20	21	30	1.98
32771241--32771437	44	4.5	44	69	11	145	27	21	21	29	1.98
32771536--32771788	45	5.7	45	82	3	314	23	22	26	27	1.99
32771529--32771798	89	3.0	89	88	0	405	22	22	26	28	1.99
32772634--32772672	19	2.0	20	85	5	53	25	0	2	71	0.98
32776695--32776786	27	3.4	27	79	5	114	25	16	27	31	1.96
32780731--32780770	18	2.2	18	90	0	62	67	0	2	30	1.04
32780732--32780786	18	3.2	16	82	7	56	63	1	3	30	1.22
32781917--32782000	29	2.8	30	81	12	93	52	4	4	38	1.44
32785109--32785165	28	2.0	28	96	0	105	26	15	10	47	1.78
32787444--32787490	24	2.0	24	83	8	60	53	6	6	34	1.52
32789328--32789598	44	6.0	44	75	11	235	29	21	19	29	1.98
32789474--32789923	44	10.5	44	68	12	179	29	21	19	30	1.97
32789739--32789880	40	3.4	41	72	7	142	30	21	19	28	1.97
32789691--32789923	84	2.8	85	87	3	319	29	21	19	29	1.98
32789933--32790339	89	4.6	89	89	0	607	22	22	24	30	1.99
32790614--32790669	24	2.3	24	93	0	94	30	23	12	33	1.92
32801287--32801481	48	4.1	47	82	5	196	29	20	27	23	1.99
32801298--32801481	96	1.9	96	84	2	244	28	20	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32806668--32806851	48	3.8	48	87	0	242	27	20	28	23	1.99
32812265--32812345	21	3.7	22	80	12	87	34	19	8	37	1.83
32817955--32818019	32	2.1	32	97	2	123	47	12	9	30	1.72
32821425--32821463	20	1.9	21	89	5	62	53	17	0	28	1.44
32823653--32823765	27	4.2	27	79	10	106	35	22	11	30	1.89
32823661--32823763	54	1.9	54	89	0	161	36	18	11	33	1.87
32823750--32823802	27	2.0	27	88	7	81	35	18	16	28	1.93
32823667--32823792	54	2.3	53	82	5	146	37	20	11	30	1.89
32824194--32824266	28	2.6	28	91	0	110	17	21	21	38	1.93
32824192--32824283	28	3.3	27	84	4	105	17	21	21	39	1.93
32838703--32838745	19	2.2	20	84	12	63	32	18	0	48	1.48
32838912--32839106	51	3.9	50	76	4	196	29	29	16	23	1.97
32838920--32839104	101	1.8	101	88	5	284	30	28	16	23	1.96
32838919--32839138	101	2.2	101	81	7	259	30	28	15	25	1.96
32841058--32841097	21	1.9	21	94	0	71	20	5	2	72	1.15
32854555--32854637	27	3.1	28	82	6	91	27	22	19	30	1.98
32854586--32854639	26	2.0	27	89	3	83	27	22	16	33	1.95
32859518--32859550	11	3.0	11	100	0	66	36	18	0	45	1.49
32883146--32883203	27	2.1	28	87	9	84	58	6	0	34	1.25
32883162--32883226	27	2.4	28	82	14	82	61	7	4	26	1.43
32884573--32884762	44	4.4	43	71	7	143	28	22	18	30	1.97
32884528--32884782	129	2.0	128	84	2	332	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32884968--32885059	44	2.1	45	85	2	123	19	27	23	29	1.98
32885065--32885155	44	2.1	44	85	4	121	31	23	13	31	1.93
32885195--32885314	44	2.7	45	85	1	127	30	25	17	26	1.97
32885351--32885964	44	14.2	44	68	12	232	26	24	19	30	1.98
32885277--32886009	347	2.1	346	85	3	999	26	24	19	30	1.98
32885216--32886009	172	4.6	173	88	1	1006	26	24	19	29	1.98
32885896--32885990	44	2.2	44	84	0	118	30	26	12	30	1.93
32886034--32886280	88	2.8	88	84	1	343	23	23	27	25	2.00
32887256--32887335	42	1.9	42	84	0	106	31	33	8	26	1.87
32888407--32888439	18	1.9	17	88	11	50	9	6	3	81	0.95
32888388--32888447	15	4.0	14	73	14	57	15	3	5	76	1.08
32888384--32888455	31	2.3	31	78	4	83	16	4	5	73	1.18
32892865--32892917	24	2.3	23	78	15	56	56	3	15	24	1.55
32893020--32893077	27	2.1	28	84	9	75	60	5	0	34	1.19
32893036--32893102	27	2.4	28	79	13	77	64	5	4	25	1.36
32894465--32894657	44	4.5	43	71	8	142	29	21	19	30	1.97
32894416--32894670	129	2.0	128	87	2	368	27	22	19	30	1.98
32894668--32894824	50	3.1	49	75	5	154	28	21	19	31	1.97
32897146--32897195	5	10.0	5	100	0	100	40	0	0	60	0.97
32905260--32905307	23	2.2	22	85	10	64	33	8	20	37	1.83
32910405--32910457	9	6.1	9	76	22	51	45	0	0	54	0.99
32914681--32914720	21	2.0	20	85	5	53	12	5	40	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32915419--32915730	100	3.1	101	85	4	427	25	22	21	30	1.99
32915419--32915675	50	5.1	50	65	9	148	26	21	21	29	1.99
32919956--32919994	13	2.9	14	85	14	55	12	15	0	71	1.14
32919956--32919994	7	5.7	7	90	9	55	12	15	0	71	1.14
32920490--32920580	10	8.6	10	70	15	51	3	6	7	82	0.94
32920530--32920574	13	3.5	12	85	14	63	0	11	6	82	0.84
32920490--32920575	14	6.4	13	76	14	77	3	6	6	82	0.93
32924772--32924848	29	2.7	29	76	11	77	51	5	7	35	1.53
32929629--32929666	19	2.1	18	90	5	58	65	0	18	15	1.27
32930345--32930390	22	2.1	22	100	0	92	47	17	26	8	1.76
32931910--32931934	12	2.1	12	100	0	50	8	0	16	76	1.02
32942705--32942782	31	2.5	31	83	8	79	51	12	6	29	1.65
32942726--32942790	31	2.1	31	91	5	105	47	10	7	33	1.67
32942740--32942798	31	2.0	31	90	6	95	49	10	6	33	1.63
32944268--32944311	20	2.2	20	88	8	63	47	4	0	47	1.22
32944762--32944866	43	2.4	43	95	4	183	35	7	11	45	1.69
32963803--32963870	24	2.8	24	81	0	73	26	14	11	47	1.79
32966030--32966059	5	6.0	5	100	0	60	40	0	20	40	1.52
32976217--32976281	34	1.9	34	84	6	87	33	18	24	23	1.96
32979138--32979187	19	2.6	20	73	20	61	48	0	4	48	1.20
32983049--32983115	21	3.2	20	73	12	64	53	16	2	26	1.57
32992190--32992314	60	2.1	60	100	0	250	37	14	17	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33005099--33005138	19	2.1	20	86	9	57	20	27	27	25	1.99
33015752--33015796	7	6.4	7	97	0	81	48	37	0	13	1.42
33015926--33015973	6	7.8	6	88	2	60	58	0	25	16	1.38
33018302--33018327	12	2.2	12	100	0	52	7	0	19	73	1.07
33019785--33019840	18	3.1	18	67	10	51	19	8	3	67	1.32
33030873--33030915	21	2.2	19	83	8	50	58	13	4	23	1.55
33033341--33033432	6	15.5	6	74	10	64	25	10	15	48	1.77
33033338--33033396	30	2.0	30	89	0	91	23	8	15	52	1.70
33033359--33033427	24	2.9	24	86	0	93	27	10	14	47	1.76
33034099--33034150	7	7.1	7	85	14	70	42	0	0	57	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206